Detail information of BGIOSGA032512_circ_g.3


General Information
CircRNA Name BGIOSGA032512_circ_g.3
ID in PlantcircBase osi_circ_008759
Alias Chr10:2808465_2810014(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 2312875-2314424  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA032512
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   Yes-No
Splicing signals   TG-AG
Number of exons covered BGIOSGA032512-TA:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCACGTCCGATAAACCCCCAAAGTATTGGCTAGTTTTTCAAGCTTCTGTACCACCACTCGGATG
GAACACCTACTTCATATCAAAATCTACTGGAACAGGgtatgctgatgcaaaaaatgcttactgg
actggatattttacaagccgtccaactttcaagcgatatattcgaatgatcagtggatattacc
tggtatga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTATGCTGATGCAAAAAATGCTTACTGGACTGGATATTTTACAAGCCGTCCAACTTTCAAGCGA
TATATTCGAATGATCAGTGGATATTACCTGGTATGATATTTCTGCAATGCAAGTCGAAAACTAC
AGGAATTATGATGATGCCTAAAGTAGTACTTTTATTTAAAAAAATAATAATCCTAAACTAGACA
TTTAGAAGCTCTAAAATAACTTAACTTTAGGACATGTGTTTTCCTGCAGGCTGCGCGTCAATTG
GAATTTTTGGTGGGTAGAAGTTCCTTAGGATTGTTTACTTCTAGCTTGGAAGATCCACTGGGGA
TTGCCCAACATCATGATGCAGTCTCAGGAACGGCAAAGCAACACACAACTGATGATTATTCGAA
ACGCCTTGCGATTGGGGTTTCTCAGGTTCATAATATTTACTACAGAAATTGTTGCCGTGATTTA
TCATGATGTTCTATTATTTAATCAAATAATTTATAATAGAGCAAAATATCTATTCCTATCTTTT
CAGGTTGAGAAAGGTGTTAATACTGCTCTAAGTTGTCTCACAAGTTCCAAAGGAACATGTACAG
CAACAAAATTTAGTCAGGTAAGATAAATATGTACTTGATTTTGTTTATGATGCTTACATTTTCA
CAAAGAATAAATATTAGTGATTCTAGTACTTTGTCACATTTCTCTTTACCATTAGTTTCTTCTA
GATTTTCCATCAGCATTACGATTCTACAACTAAAGGTAAAAGGTGGCCAATCATTAATATTAAT
TGTTAAGACTGTTTTTGCACAACAGTTTCAGAAATAACATTTTAAAATTTCCATATGCAATTTT
GGAACATATTTCCCTGGTGTGACTATTTGTCTTGTTCAATCAACTTTTTTAGTGCCAACTTCTC
AATATTAGCTACTGCCCTTCAACTGAGGAAGGAATTTCATCCGCAAAGAGTTTAGTAAGTACAA
ATTAGTAATCTGTTCTATTACAAGAAATGCCAGTTAAGTTTTTCATATATTGACATGATCCTAT
GCAGGTTATAGTTGTTTATAATCCTCTTGGATGGGAACGTAGTGACTTTGTAAGAGTTCCAGTA
AGTTTTTCAAAGCTCTGCTCAACCGTTCTGTTCAGTAGTTTCTGATGGTCTACACAAGAACTTA
TAGATTAAGAGTTCTTAATGATCCATATGGAGAAAAATATACCTCAATTTAATCAAAATACTTC
AATATACTTTGTAAACACATAGAACGAAATTTCCGATAAACCATGTGCTCTTTTTACTAGATCT
AGCTTCTTTGACTAACCCGTATTCCATAATTATTTTAACTATTTTGCAGGTAAATGATGCCAAC
TTAATTGTAAAAACCTCTGATGGAACTTCTCTGGAGTCACAACTAGTTGAAGTTGATATCGTGA
CAGCACGTTTAAGGAAGTTATACATAAAGGCTTATCTTGGAATCACGTCCGATAAACCCCCAAA
GTATTGGCTAGTTTTTCAAGCTTCTGTACCACCACTCGGATGGAACACCTACTTCATATCAAAA
TCTACTGGAACAGG
Conservation Information
Conserved circRNAs osa_circ_006173
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021