Plant Circular RNA Database

Detail information of BGIOSGA019441_circ_g.19

			
						 General Information
					
						CircRNA Name
						BGIOSGA019441_circ_g.19
					
						ID in PlantcircBase
						osi_circ_006085
					
						Alias
						5:9895565|9900144
					
						Organism
						
							Oryza sativa ssp. indica						
					
						Position
						
							chr5: 9895565-9900144  JBrowse»						
					
						Reference genome
						
							Oryza_indica.ASM465v1.42						
					
						Type  
						
							e-circRNA							
									
						Identification method
						find_circ
					
						Parent gene
						
							BGIOSGA019441						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						+
					
						Alternative splicing
						
							BGIOSGA019441_circ_g.16 BGIOSGA019441_circ_g.17 BGIOSGA019441_circ_g.18 BGIOSGA019441_circ_g.20 BGIOSGA019441_circ_g.21 BGIOSGA019441_circ_g.22 						
					
						Support reads
						NA
					
						Tissues
						leaf
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						BGIOSGA019441-TA:9

General Information
CircRNA Name	BGIOSGA019441_circ_g.19
ID in PlantcircBase	osi_circ_006085
Alias	5:9895565\|9900144
Organism	Oryza sativa ssp. indica
Position	chr5: 9895565-9900144 JBrowse»
Reference genome	Oryza_indica.ASM465v1.42
Type	e-circRNA
Identification method	find_circ
Parent gene	BGIOSGA019441
Parent gene annotation	NA
Parent gene strand	+
Alternative splicing	BGIOSGA019441_circ_g.16 BGIOSGA019441_circ_g.17 BGIOSGA019441_circ_g.18 BGIOSGA019441_circ_g.20 BGIOSGA019441_circ_g.21 BGIOSGA019441_circ_g.22
Support reads	NA
Tissues	leaf
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	BGIOSGA019441-TA:9

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							ATCATCATAAACTTTCCAGGCTTATGGTCATGAATTACTGGAAGCCCACGAATGCTGTTTAAAA
TATCGGGCTACAGGAGAGGATGCTGAGTTAACTAAGgtgattgattactgcactcttccaatgg
aaagtccaatagctgacagccggagggaacttatccgtaatatgtggaatgagcgtattaaagg
aacaaaac

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							GTGATTGATTACTGCACTCTTCCAATGGAAAGTCCAATAGCTGACAGCCGGAGGGAACTTATCC
GTAATATGTGGAATGAGCGTATTAAAGGAACAAAACGGAATGTTGAGGTCATATTATGCTTCTT
TTAACTGCCTTGTGCCTTATACATATACTCCCTCCGTCCCAAAATATAACAACTTCTAGGCTTC
AATATTTGTCCCAAAATACAACTTCTCCACCTACATTCTGTTCTCTTCTCAACCAATCACAACC
TTCCACCATTCAAATTCCCTACCTACCTCCTCTTCTCAACCAATCACAACCTTCTTCTATTTAA
TTCCACCAACTTTCTTAATACTCATGTCTAACCCTCAAACTCCTTATATTTTGGGACGAAGGTA
GTATAATCTTTTTCATATTGGCTATGCTGACTAAAAAAATTGCAGGTGTGGCAAGCCTTACTTG
CTGTTAGAGAGTTGGTTCTCCCTCCTAATGAAGACAGAGACACCTGGATAAAATTTGCCAAACT
TTGCTGGAAGAGTGGCCGCATTAGTCAGGCTAAATCTACCTTAGTCAAACTCTTACAGGTAGGC
TTTAGTCATTCTTCATCAGTGTGTCTGTGCTACTCCCTCCTATAAAATAGTTAATTCCTGTGTC
AAAATGCAGTTTGATCCAGAATCTTCCCCTGAATTGACGCTGTATCATGGACATCCTCAAGTAG
TCCTGGCATACCTGAAGTACCAGTATGCTGTTGGAGATGAGCTTAAACGAAGGGACGCGTTTTG
CAGGCTACAGGTGAGCTTGTTATTGTCCTTCGTCTTTGACCCCAAGTTGCAGAATTATTCTGCA
TTTAAGTGGTTTTTTATACTTCCTTTTTGGTTTTGTGGTATAGGATTTGTCTGTGCAGCTTGCT
ACCGCAACAAATAGTTATTCTGGAACATTAGCAAGCCAGGTTGCCACATCAAATGCTGGAGTAC
CACTTATTGCTCGCGTCTATTTGACACTTGCTAGCTGGAAGAGAGCATTATCACCTGGGTTAGA
CGATGATTCTATTCAAGGTCTGAATAACTTCAGTTTATTTCCCTCTTGAGGGGTGGGTGGGCAA
GATTGCCTACCAAAGTATTGAGACTTGAAAAAATAGTTATTTTACTTTTTGTCTGCCTGCCCGT
TTTGATGTAAATATACTTTTTTTCTTTATCCAGAAATATTGGTCTCTTACAAAAATGCCACACT
TAATGCCAAGGACTGGGGCAAGGCATGGCACTTATGGGCCTTGTTCAACACTGAAGTCATGTCC
CGCTATACTTTGCGTGGTCGACCAGATATTGCAGGAAAATATGTTGTTGCAGCAGTAACTGGGT
ATTTCTACTCTATTGCTTGCGCATCCACGACAAAAGGTGTTGATGATAGCTTACAGGTAAATCT
TTTTCCCCTTTTCCCCCCATAAGGCTGATTCTGAGCAAGAGCTTTTTCGAATGAAAAATTCTCA
TCCTTGAGCATCTTTATAGTTACTATTCTTTATGAACATTGTTAAAATTGATGGAAACTTAAAT
GATGACACTTGTTTGTTTGTGACCATAGTACTACTCCCTCGGTCCCAAAATATAGCTACTTCTA
GCGTTCAAAATCTGTTCCCGAAATATAGCTACTCCACCTCCCTCATCTCAACCAATCACAAACA
TCTCTCATTTAATTTCTCCACCTACTTCCTCATATCGAACCAATCACAACCACCCCTCATTTAA
TTTCACCTCTCCTTAGTCTCCGTGAAAAACTCCAGGGGTAGCTATATTTTGGGATGGAGGGAGT
ATATTTTATAAAGTTTGTGGATGGAGATTAATGTTGTTTATAGCCATGAACTTCTAGAAAAAGC
TTGCATCTACTGAGACTTAGCCTAAACTATCACTGGTCAACAACTCTTTTAACTAAAATAATTT
CTACTGTGGTTTGTTGATAGTCTAGGAGATAATTCTTCCTCTCTTTTTTTTCAAAAGAGCATAG
CAGGAGCTCTGCCCATTTCACTTAGAAGAGAAGAGAAACAAAAAAATACAAGATAGAATCGATC
ATGTTACATGCCTCGATAGAAGCAAATGACAACTAAAAAGACCAACATAAAGAGAGAAAGGGAT
AAAACTCTCTCAATGGTTCAGCGTGTTGCCGTTTGATCTGGAAGCTATGCATTGGATGCTGGAG
CTAATTGTTGCATACTATCTTGAACCGAGAACGAATGCTGCTTATTTAATTTTTGGCAAAATTG
GTTATATAGCATCGAAAGTTCACGTTTTTGGTTTTATAGCACCGAAAGATACCGGTTCACTTTA
ATAGCACCCAAAGTTCACCCCGTTCCCATTTTTAACACTTCCGTCAATTTTCCGTCCGTCTGAT
CGTAATTGACCCAGCCACGCACACGATATGACGTTTCTACCCCTCATTGACATGCATTCTACTT
GTACTTGTGAGGGGTAGAAACGTCATATCGTGTGTGTGGCTGGATCAAGACGGACGGAAAAATG
ACGGAAGTGTTAAAAATGGGAATGGGGTGAACTTTGGGTGCTATTAAAGTGAACCGGTATCTTT
CGGTGCTATAAAACCAAAAGCGTGAACTTTCGATGCTATATAACCAATTTTGCCTTAATTTTTT
TTACTGATGGCAGAACTACAGTGGTGTGAATGCAGAAAAAAAAAATTCTATATGATGTCTTGTT
GCAGAATAATTTTGATAGATGGATTTTACAGTGTTCTAAAAGGCAGCGACCTAAATAGCGTTTG
CCATTTTGCCTATTCAGATAGCTGTCTAACCTGAAAAGTCAGAGATGACTAGATGGATTGCAGG
ATGCCGAGTAGCTCGTGCCTTATAAAACACTGGAATTTTGACTGATGGAGATTATTTCTGTGCA
ACTGCTTTTGTAGGATATCCTTCGTCTCTTGACTCTTTGGTTTAATCATGGGGCTACCTCAGAG
GTTCAAATGGCACTGCAGAAAGGCTTTTCACTTGTCAATATAGAAATGTGGTTGGTTGTCCTTC
CCCAGATAATTGCAAGGATCCATTCAAATAATAAAATAGTGAGAGAACTGATACAGTCATTGCT
GGTTCGAATTGGAAAGGATCATCCACAGGTTTGCATTTTTTCTTGACATAGGTTCTGGCTAATG
ACTGGGAGTCTGAGAGGCTCCACTTGAATATCTGTTCTGACTTCTGAGTGCAATTTACTACACC
CTCTCTTCTCGAGTAGACGACATTTTAGAAAACTTGCAGTCAAACCTTGAAATCTTGAGTCGCT
AATGTATGAAAAGAATATTAAGATTTAATATATGCAAACGACATTAGTAGATTCGCTATGAAAA
ATACTTCTGTGCAGTTTATATTTCATAATAATTTTATGAATATATAATTAGAAAAACAATAATC
AGACATGTGCATCGAGACTTCCAATGTCCTAAAAGACAAATAAAAATGAACAGAGGTATTATAT
ATTATGCTGTCCTACAGCAACAGTACCAAACTTGCTGTTCTTGGTTTAACGATAGGACATGTCA
TCTATTAAAAGGAATAACCTAGAGAAAATATTAAAAATTGAAGGAACTGAATTTATAGCACAGG
TCTGCAGGAGGCTTGATGAAATATTTTAAAAACAATGAGGAAATATTTGTCTATTTTCTCACTT
GTTTGTTTTCTTTCAATGTTTTACTTATGTCCTGTTTTCCTCCTTTCTCCAGAATTGAATTTGC
TTAGCCTTCTAGTAGTTATATGCATTTCAAATAGTTGTGTATATCCTAATGCTGCTGAAACCTG
CAATACCAGTTAAAACAAGTATGACTGGTGACCACCTGATAGGAACCCATTAGAAAGTTTACCT
ACATTAGTCTTGACAGTTATTTTACATGACCTAACTATTGTTTTGGTTACTTTGCTATCTTAAT
CAGGCATTGATGTATCCTCTGTTGGTTGCTTGCAAATCAATAAGCATATTAAGACAACGAGCGG
CGCAAGAGGTCGTCGATAAGATCCGCCAACATAGTGGAGGTCTTGTTGATCAGGTTAGCATCAG
CACCTATGGGGTCTGTAAAAAAATATTCATTTCACTCCTGATATTTCTGTGAATGTTCGTTGTT
CCAGGCACAGCTTGTTTCAAAGGAACTGATACGAGTTGCCATTCTGTGGCATGAGATGTGGCAT
GAGGCTCTTGAGGAAGCTAGCAGGATGTATTTTGGTGAGCACAATATTGAGGGAATGCTTGCAG
TGCTTGAACCATTGCATGCAATGCTCGAGAGGGGTCCTGAGACAATAAAAGAAAATACTTTCAT
TCAGGTGGCGACATCTTCAAAACTTAGTACCCTATGCCTTAAATACTTTACTGTGACACCAATC
CAGTTCTTCCTGGAATTTGGGTTGTTTTTCATATTACTTTCAGTTTGTCTTAAGAAATAGGTCA
CCTTTTGTACCTTAATGTCTTTGGTAAATAAGTTTATCCTGTGAAGTGTTGGATAATAACTTAT
ATCATCATAAACTTTCCAGGCTTATGGTCATGAATTACTGGAAGCCCACGAATGCTGTTTAAAA
TATCGGGCTACAGGAGAGGATGCTGAGTTAACTAAG
						
					

			
		

Sequences
Splice junction sequence	ATCATCATAAACTTTCCAGGCTTATGGTCATGAATTACTGGAAGCCCACGAATGCTGTTTAAAA TATCGGGCTACAGGAGAGGATGCTGAGTTAACTAAGgtgattgattactgcactcttccaatgg aaagtccaatagctgacagccggagggaacttatccgtaatatgtggaatgagcgtattaaagg aacaaaac
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	GTGATTGATTACTGCACTCTTCCAATGGAAAGTCCAATAGCTGACAGCCGGAGGGAACTTATCC GTAATATGTGGAATGAGCGTATTAAAGGAACAAAACGGAATGTTGAGGTCATATTATGCTTCTT TTAACTGCCTTGTGCCTTATACATATACTCCCTCCGTCCCAAAATATAACAACTTCTAGGCTTC AATATTTGTCCCAAAATACAACTTCTCCACCTACATTCTGTTCTCTTCTCAACCAATCACAACC TTCCACCATTCAAATTCCCTACCTACCTCCTCTTCTCAACCAATCACAACCTTCTTCTATTTAA TTCCACCAACTTTCTTAATACTCATGTCTAACCCTCAAACTCCTTATATTTTGGGACGAAGGTA GTATAATCTTTTTCATATTGGCTATGCTGACTAAAAAAATTGCAGGTGTGGCAAGCCTTACTTG CTGTTAGAGAGTTGGTTCTCCCTCCTAATGAAGACAGAGACACCTGGATAAAATTTGCCAAACT TTGCTGGAAGAGTGGCCGCATTAGTCAGGCTAAATCTACCTTAGTCAAACTCTTACAGGTAGGC TTTAGTCATTCTTCATCAGTGTGTCTGTGCTACTCCCTCCTATAAAATAGTTAATTCCTGTGTC AAAATGCAGTTTGATCCAGAATCTTCCCCTGAATTGACGCTGTATCATGGACATCCTCAAGTAG TCCTGGCATACCTGAAGTACCAGTATGCTGTTGGAGATGAGCTTAAACGAAGGGACGCGTTTTG CAGGCTACAGGTGAGCTTGTTATTGTCCTTCGTCTTTGACCCCAAGTTGCAGAATTATTCTGCA TTTAAGTGGTTTTTTATACTTCCTTTTTGGTTTTGTGGTATAGGATTTGTCTGTGCAGCTTGCT ACCGCAACAAATAGTTATTCTGGAACATTAGCAAGCCAGGTTGCCACATCAAATGCTGGAGTAC CACTTATTGCTCGCGTCTATTTGACACTTGCTAGCTGGAAGAGAGCATTATCACCTGGGTTAGA CGATGATTCTATTCAAGGTCTGAATAACTTCAGTTTATTTCCCTCTTGAGGGGTGGGTGGGCAA GATTGCCTACCAAAGTATTGAGACTTGAAAAAATAGTTATTTTACTTTTTGTCTGCCTGCCCGT TTTGATGTAAATATACTTTTTTTCTTTATCCAGAAATATTGGTCTCTTACAAAAATGCCACACT TAATGCCAAGGACTGGGGCAAGGCATGGCACTTATGGGCCTTGTTCAACACTGAAGTCATGTCC CGCTATACTTTGCGTGGTCGACCAGATATTGCAGGAAAATATGTTGTTGCAGCAGTAACTGGGT ATTTCTACTCTATTGCTTGCGCATCCACGACAAAAGGTGTTGATGATAGCTTACAGGTAAATCT TTTTCCCCTTTTCCCCCCATAAGGCTGATTCTGAGCAAGAGCTTTTTCGAATGAAAAATTCTCA TCCTTGAGCATCTTTATAGTTACTATTCTTTATGAACATTGTTAAAATTGATGGAAACTTAAAT GATGACACTTGTTTGTTTGTGACCATAGTACTACTCCCTCGGTCCCAAAATATAGCTACTTCTA GCGTTCAAAATCTGTTCCCGAAATATAGCTACTCCACCTCCCTCATCTCAACCAATCACAAACA TCTCTCATTTAATTTCTCCACCTACTTCCTCATATCGAACCAATCACAACCACCCCTCATTTAA TTTCACCTCTCCTTAGTCTCCGTGAAAAACTCCAGGGGTAGCTATATTTTGGGATGGAGGGAGT ATATTTTATAAAGTTTGTGGATGGAGATTAATGTTGTTTATAGCCATGAACTTCTAGAAAAAGC TTGCATCTACTGAGACTTAGCCTAAACTATCACTGGTCAACAACTCTTTTAACTAAAATAATTT CTACTGTGGTTTGTTGATAGTCTAGGAGATAATTCTTCCTCTCTTTTTTTTCAAAAGAGCATAG CAGGAGCTCTGCCCATTTCACTTAGAAGAGAAGAGAAACAAAAAAATACAAGATAGAATCGATC ATGTTACATGCCTCGATAGAAGCAAATGACAACTAAAAAGACCAACATAAAGAGAGAAAGGGAT AAAACTCTCTCAATGGTTCAGCGTGTTGCCGTTTGATCTGGAAGCTATGCATTGGATGCTGGAG CTAATTGTTGCATACTATCTTGAACCGAGAACGAATGCTGCTTATTTAATTTTTGGCAAAATTG GTTATATAGCATCGAAAGTTCACGTTTTTGGTTTTATAGCACCGAAAGATACCGGTTCACTTTA ATAGCACCCAAAGTTCACCCCGTTCCCATTTTTAACACTTCCGTCAATTTTCCGTCCGTCTGAT CGTAATTGACCCAGCCACGCACACGATATGACGTTTCTACCCCTCATTGACATGCATTCTACTT GTACTTGTGAGGGGTAGAAACGTCATATCGTGTGTGTGGCTGGATCAAGACGGACGGAAAAATG ACGGAAGTGTTAAAAATGGGAATGGGGTGAACTTTGGGTGCTATTAAAGTGAACCGGTATCTTT CGGTGCTATAAAACCAAAAGCGTGAACTTTCGATGCTATATAACCAATTTTGCCTTAATTTTTT TTACTGATGGCAGAACTACAGTGGTGTGAATGCAGAAAAAAAAAATTCTATATGATGTCTTGTT GCAGAATAATTTTGATAGATGGATTTTACAGTGTTCTAAAAGGCAGCGACCTAAATAGCGTTTG CCATTTTGCCTATTCAGATAGCTGTCTAACCTGAAAAGTCAGAGATGACTAGATGGATTGCAGG ATGCCGAGTAGCTCGTGCCTTATAAAACACTGGAATTTTGACTGATGGAGATTATTTCTGTGCA ACTGCTTTTGTAGGATATCCTTCGTCTCTTGACTCTTTGGTTTAATCATGGGGCTACCTCAGAG GTTCAAATGGCACTGCAGAAAGGCTTTTCACTTGTCAATATAGAAATGTGGTTGGTTGTCCTTC CCCAGATAATTGCAAGGATCCATTCAAATAATAAAATAGTGAGAGAACTGATACAGTCATTGCT GGTTCGAATTGGAAAGGATCATCCACAGGTTTGCATTTTTTCTTGACATAGGTTCTGGCTAATG ACTGGGAGTCTGAGAGGCTCCACTTGAATATCTGTTCTGACTTCTGAGTGCAATTTACTACACC CTCTCTTCTCGAGTAGACGACATTTTAGAAAACTTGCAGTCAAACCTTGAAATCTTGAGTCGCT AATGTATGAAAAGAATATTAAGATTTAATATATGCAAACGACATTAGTAGATTCGCTATGAAAA ATACTTCTGTGCAGTTTATATTTCATAATAATTTTATGAATATATAATTAGAAAAACAATAATC AGACATGTGCATCGAGACTTCCAATGTCCTAAAAGACAAATAAAAATGAACAGAGGTATTATAT ATTATGCTGTCCTACAGCAACAGTACCAAACTTGCTGTTCTTGGTTTAACGATAGGACATGTCA TCTATTAAAAGGAATAACCTAGAGAAAATATTAAAAATTGAAGGAACTGAATTTATAGCACAGG TCTGCAGGAGGCTTGATGAAATATTTTAAAAACAATGAGGAAATATTTGTCTATTTTCTCACTT GTTTGTTTTCTTTCAATGTTTTACTTATGTCCTGTTTTCCTCCTTTCTCCAGAATTGAATTTGC TTAGCCTTCTAGTAGTTATATGCATTTCAAATAGTTGTGTATATCCTAATGCTGCTGAAACCTG CAATACCAGTTAAAACAAGTATGACTGGTGACCACCTGATAGGAACCCATTAGAAAGTTTACCT ACATTAGTCTTGACAGTTATTTTACATGACCTAACTATTGTTTTGGTTACTTTGCTATCTTAAT CAGGCATTGATGTATCCTCTGTTGGTTGCTTGCAAATCAATAAGCATATTAAGACAACGAGCGG CGCAAGAGGTCGTCGATAAGATCCGCCAACATAGTGGAGGTCTTGTTGATCAGGTTAGCATCAG CACCTATGGGGTCTGTAAAAAAATATTCATTTCACTCCTGATATTTCTGTGAATGTTCGTTGTT CCAGGCACAGCTTGTTTCAAAGGAACTGATACGAGTTGCCATTCTGTGGCATGAGATGTGGCAT GAGGCTCTTGAGGAAGCTAGCAGGATGTATTTTGGTGAGCACAATATTGAGGGAATGCTTGCAG TGCTTGAACCATTGCATGCAATGCTCGAGAGGGGTCCTGAGACAATAAAAGAAAATACTTTCAT TCAGGTGGCGACATCTTCAAAACTTAGTACCCTATGCCTTAAATACTTTACTGTGACACCAATC CAGTTCTTCCTGGAATTTGGGTTGTTTTTCATATTACTTTCAGTTTGTCTTAAGAAATAGGTCA CCTTTTGTACCTTAATGTCTTTGGTAAATAAGTTTATCCTGTGAAGTGTTGGATAATAACTTAT ATCATCATAAACTTTCCAGGCTTATGGTCATGAATTACTGGAAGCCCACGAATGCTGTTTAAAA TATCGGGCTACAGGAGAGGATGCTGAGTTAACTAAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS

Conservation Information
Conserved circRNAs	NA
PMCS

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							9895590-9900141(+)
						
					

						Potential amino acid sequence
						
							MESPIADSRRELIRNMWNERIKGTKRNVEVWQALLAVRELVLPPNEDRDTWIKFAKLCWKSGRI
SQAKSTLVKLLQFDPESSPELTLYHGHPQVVLAYLKYQYAVGDELKRRDAFCRLQDLSVQLATA
TNSYSGTLASQVATSNAGVPLIARVYLTLASWKRALSPGLDDDSIQEILVSYKNATLNAKDWGK
AWHLWALFNTEVMSRYTLRGRPDIAGKYVVAAVTGYFYSIACASTTKGVDDSLQDILRLLTLWF
NHGATSEVQMALQKGFSLVNIEMWLVVLPQIIARIHSNNKIVRELIQSLLVRIGKDHPQALMYP
LLVACKSISILRQRAAQEVVDKIRQHSGGLVDQAQLVSKELIRVAILWHEMWHEALEEASRMYF
GEHNIEGMLAVLEPLHAMLERGPETIKENTFIQAYGHELLEAHECCLKYRATGEDAELTKVIDY
CTLPMESPIADSRRELIRNMWNERIKGTKRNVEVWQALLAVRELVLPPNEDRDTWIKFAKLCWK
SGRISQAKSTLVKLLQFDPESSPELTLYHGHPQVVLAYLKYQYAVGDELKRRDAFCRLQDLSVQ
LATATNSYSGTLASQVATSNAGVPLIARVYLTLASWKRALSPGLDDDSIQEILVSYKNATLNAK
DWGKAWHLWALFNTEVMSRYTLRGRPDIAGKYVVAAVTGYFYSIACASTTKGVDDSLQDILRLL
TLWFNHGATSEVQMALQKGFSLVNIEMWLVVLPQIIARIHSNNKIVRELIQSLLVRIGKDHPQA
LMYPLLVACKSISILRQRAAQEVVDKIRQHSGGLVDQAQLVSKELIRVAILWHEMWHEALEEAS
RMYFGEHNIEGMLAVLEPLHAMLERGPETIKENTFIQAYGHELLEAHECCLKYRATGEDAELTK
VIDYCTLPMESPIADSRRELIRNMWNERIKGTKRNVEVWQALLAVRELVLPPNEDRDTWIKFAK
LCWKSGRISQAKSTLVKLLQFDPESSPELTLYHGHPQVVLAYLKYQYAVGDELKRRDAFCRLQD
LSVQLATATNSYSGTLASQVATSNAGVPLIARVYLTLASWKRALSPGLDDDSIQEILVSYKNAT
LNAKDWGKAWHLWALFNTEVMSRYTLRGRPDIAGKYVVAAVTGYFYSIACASTTKGVDDSLQDI
LRLLTLWFNHGATSEVQMALQKGFSLVNIEMWLVVLPQIIARIHSNNKIVRELIQSLLVRIGKD
HPQALMYPLLVACKSISILRQRAAQEVVDKIRQHSGGLVDQAQLVSKELIRVAILWHEMWHEAL
EEASRMYFGEHNIEGMLAVLEPLHAMLERGPETIKENTFIQAYGHELLEAHECCLKYRATGEDA
ELTKVIDYCTLPMESPIADSRRELIRNMWNERIKGTKRNVEVWQALLAVRELVLPPNEDRDTWI
KFAKLCWKSGRISQAKSTLVKLLQFDPESSPELTLYHGHPQVVLAYLKYQYAVGDELKRRDAFC
RLQDLSVQLATATNSYSGTLASQVATSNAGVPLIARVYLTLASWKRALSPGLDDDSIQEILVSY
KNATLNAKDWGKAWHLWALFNTEVMSRYTLRGRPDIAGKYVVAAVTGYFYSIACASTTKGVDDS
LQDILRLLTLWFNHGATSEVQMALQKGFSLVNIEMWLVVLPQIIARIHSNNKIVRELIQSLLVR
IGKDHPQALMYPLLVACKSISILRQRAAQEVVDKIRQHSGGLVDQAQLVSKELIRVAILWHEMW
HEALEEASRMYFGEHNIEGMLAVLEPLHAMLERGPETIKENTFIQAYGHELLEAHECCLKYRAT
GEDAELTK(+)
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	9895590-9900141(+)
Potential amino acid sequence	MESPIADSRRELIRNMWNERIKGTKRNVEVWQALLAVRELVLPPNEDRDTWIKFAKLCWKSGRI SQAKSTLVKLLQFDPESSPELTLYHGHPQVVLAYLKYQYAVGDELKRRDAFCRLQDLSVQLATA TNSYSGTLASQVATSNAGVPLIARVYLTLASWKRALSPGLDDDSIQEILVSYKNATLNAKDWGK AWHLWALFNTEVMSRYTLRGRPDIAGKYVVAAVTGYFYSIACASTTKGVDDSLQDILRLLTLWF NHGATSEVQMALQKGFSLVNIEMWLVVLPQIIARIHSNNKIVRELIQSLLVRIGKDHPQALMYP LLVACKSISILRQRAAQEVVDKIRQHSGGLVDQAQLVSKELIRVAILWHEMWHEALEEASRMYF GEHNIEGMLAVLEPLHAMLERGPETIKENTFIQAYGHELLEAHECCLKYRATGEDAELTKVIDY CTLPMESPIADSRRELIRNMWNERIKGTKRNVEVWQALLAVRELVLPPNEDRDTWIKFAKLCWK SGRISQAKSTLVKLLQFDPESSPELTLYHGHPQVVLAYLKYQYAVGDELKRRDAFCRLQDLSVQ LATATNSYSGTLASQVATSNAGVPLIARVYLTLASWKRALSPGLDDDSIQEILVSYKNATLNAK DWGKAWHLWALFNTEVMSRYTLRGRPDIAGKYVVAAVTGYFYSIACASTTKGVDDSLQDILRLL TLWFNHGATSEVQMALQKGFSLVNIEMWLVVLPQIIARIHSNNKIVRELIQSLLVRIGKDHPQA LMYPLLVACKSISILRQRAAQEVVDKIRQHSGGLVDQAQLVSKELIRVAILWHEMWHEALEEAS RMYFGEHNIEGMLAVLEPLHAMLERGPETIKENTFIQAYGHELLEAHECCLKYRATGEDAELTK VIDYCTLPMESPIADSRRELIRNMWNERIKGTKRNVEVWQALLAVRELVLPPNEDRDTWIKFAK LCWKSGRISQAKSTLVKLLQFDPESSPELTLYHGHPQVVLAYLKYQYAVGDELKRRDAFCRLQD LSVQLATATNSYSGTLASQVATSNAGVPLIARVYLTLASWKRALSPGLDDDSIQEILVSYKNAT LNAKDWGKAWHLWALFNTEVMSRYTLRGRPDIAGKYVVAAVTGYFYSIACASTTKGVDDSLQDI LRLLTLWFNHGATSEVQMALQKGFSLVNIEMWLVVLPQIIARIHSNNKIVRELIQSLLVRIGKD HPQALMYPLLVACKSISILRQRAAQEVVDKIRQHSGGLVDQAQLVSKELIRVAILWHEMWHEAL EEASRMYFGEHNIEGMLAVLEPLHAMLERGPETIKENTFIQAYGHELLEAHECCLKYRATGEDA ELTKVIDYCTLPMESPIADSRRELIRNMWNERIKGTKRNVEVWQALLAVRELVLPPNEDRDTWI KFAKLCWKSGRISQAKSTLVKLLQFDPESSPELTLYHGHPQVVLAYLKYQYAVGDELKRRDAFC RLQDLSVQLATATNSYSGTLASQVATSNAGVPLIARVYLTLASWKRALSPGLDDDSIQEILVSY KNATLNAKDWGKAWHLWALFNTEVMSRYTLRGRPDIAGKYVVAAVTGYFYSIACASTTKGVDDS LQDILRLLTLWFNHGATSEVQMALQKGFSLVNIEMWLVVLPQIIARIHSNNKIVRELIQSLLVR IGKDHPQALMYPLLVACKSISILRQRAAQEVVDKIRQHSGGLVDQAQLVSKELIRVAILWHEMW HEALEEASRMYFGEHNIEGMLAVLEPLHAMLERGPETIKENTFIQAYGHELLEAHECCLKYRAT GEDAELTK(+)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Huang et al., 2021

circRNA

Detail information of BGIOSGA019441_circ_g.19

Address

Any questions?

Supported by