Detail information of BGIOSGA019441_circ_g.17


General Information
CircRNA Name BGIOSGA019441_circ_g.17
ID in PlantcircBase osi_circ_016068
Alias Chr05:8193950_8198691(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr5: 9895564-9900303  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2
Parent gene BGIOSGA019441
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA019441_circ_g.16 BGIOSGA019441_circ_g.18 BGIOSGA019441_circ_g.19 BGIOSGA019441_circ_g.20 BGIOSGA019441_circ_g.21 BGIOSGA019441_circ_g.22
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA019441-TA:10
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGTTAACATTTTTATTGTTTTTTAGGCATGGGATTTGTATTACCATGTTTTCAGAAGAATAGAC
AAACAGCTTCCAAGTCTTACAACTTTGGATTTGCACggtgattgattactgcactcttccaatg
gaaagtccaatagctgacagccggagggaacttatccgtaatatgtggaatgagcgtattaaag
gaacaaaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTGATTGATTACTGCACTCTTCCAATGGAAAGTCCAATAGCTGACAGCCGGAGGGAACTTATC
CGTAATATGTGGAATGAGCGTATTAAAGGAACAAAACGGAATGTTGAGGTCATATTATGCTTCT
TTTAACTGCCTTGTGCCTTATACATATACTCCCTCCGTCCCAAAATATAACAACTTCTAGGCTT
CAATATTTGTCCCAAAATACAACTTCTCCACCTACATTCTGTTCTCTTCTCAACCAATCACAAC
CTTCCACCATTCAAATTCCCTACCTACCTCCTCTTCTCAACCAATCACAACCTTCTTCTATTTA
ATTCCACCAACTTTCTTAATACTCATGTCTAACCCTCAAACTCCTTATATTTTGGGACGAAGGT
AGTATAATCTTTTTCATATTGGCTATGCTGACTAAAAAAATTGCAGGTGTGGCAAGCCTTACTT
GCTGTTAGAGAGTTGGTTCTCCCTCCTAATGAAGACAGAGACACCTGGATAAAATTTGCCAAAC
TTTGCTGGAAGAGTGGCCGCATTAGTCAGGCTAAATCTACCTTAGTCAAACTCTTACAGGTAGG
CTTTAGTCATTCTTCATCAGTGTGTCTGTGCTACTCCCTCCTATAAAATAGTTAATTCCTGTGT
CAAAATGCAGTTTGATCCAGAATCTTCCCCTGAATTGACGCTGTATCATGGACATCCTCAAGTA
GTCCTGGCATACCTGAAGTACCAGTATGCTGTTGGAGATGAGCTTAAACGAAGGGACGCGTTTT
GCAGGCTACAGGTGAGCTTGTTATTGTCCTTCGTCTTTGACCCCAAGTTGCAGAATTATTCTGC
ATTTAAGTGGTTTTTTATACTTCCTTTTTGGTTTTGTGGTATAGGATTTGTCTGTGCAGCTTGC
TACCGCAACAAATAGTTATTCTGGAACATTAGCAAGCCAGGTTGCCACATCAAATGCTGGAGTA
CCACTTATTGCTCGCGTCTATTTGACACTTGCTAGCTGGAAGAGAGCATTATCACCTGGGTTAG
ACGATGATTCTATTCAAGGTCTGAATAACTTCAGTTTATTTCCCTCTTGAGGGGTGGGTGGGCA
AGATTGCCTACCAAAGTATTGAGACTTGAAAAAATAGTTATTTTACTTTTTGTCTGCCTGCCCG
TTTTGATGTAAATATACTTTTTTTCTTTATCCAGAAATATTGGTCTCTTACAAAAATGCCACAC
TTAATGCCAAGGACTGGGGCAAGGCATGGCACTTATGGGCCTTGTTCAACACTGAAGTCATGTC
CCGCTATACTTTGCGTGGTCGACCAGATATTGCAGGAAAATATGTTGTTGCAGCAGTAACTGGG
TATTTCTACTCTATTGCTTGCGCATCCACGACAAAAGGTGTTGATGATAGCTTACAGGTAAATC
TTTTTCCCCTTTTCCCCCCATAAGGCTGATTCTGAGCAAGAGCTTTTTCGAATGAAAAATTCTC
ATCCTTGAGCATCTTTATAGTTACTATTCTTTATGAACATTGTTAAAATTGATGGAAACTTAAA
TGATGACACTTGTTTGTTTGTGACCATAGTACTACTCCCTCGGTCCCAAAATATAGCTACTTCT
AGCGTTCAAAATCTGTTCCCGAAATATAGCTACTCCACCTCCCTCATCTCAACCAATCACAAAC
ATCTCTCATTTAATTTCTCCACCTACTTCCTCATATCGAACCAATCACAACCACCCCTCATTTA
ATTTCACCTCTCCTTAGTCTCCGTGAAAAACTCCAGGGGTAGCTATATTTTGGGATGGAGGGAG
TATATTTTATAAAGTTTGTGGATGGAGATTAATGTTGTTTATAGCCATGAACTTCTAGAAAAAG
CTTGCATCTACTGAGACTTAGCCTAAACTATCACTGGTCAACAACTCTTTTAACTAAAATAATT
TCTACTGTGGTTTGTTGATAGTCTAGGAGATAATTCTTCCTCTCTTTTTTTTCAAAAGAGCATA
GCAGGAGCTCTGCCCATTTCACTTAGAAGAGAAGAGAAACAAAAAAATACAAGATAGAATCGAT
CATGTTACATGCCTCGATAGAAGCAAATGACAACTAAAAAGACCAACATAAAGAGAGAAAGGGA
TAAAACTCTCTCAATGGTTCAGCGTGTTGCCGTTTGATCTGGAAGCTATGCATTGGATGCTGGA
GCTAATTGTTGCATACTATCTTGAACCGAGAACGAATGCTGCTTATTTAATTTTTGGCAAAATT
GGTTATATAGCATCGAAAGTTCACGTTTTTGGTTTTATAGCACCGAAAGATACCGGTTCACTTT
AATAGCACCCAAAGTTCACCCCGTTCCCATTTTTAACACTTCCGTCAATTTTCCGTCCGTCTGA
TCGTAATTGACCCAGCCACGCACACGATATGACGTTTCTACCCCTCATTGACATGCATTCTACT
TGTACTTGTGAGGGGTAGAAACGTCATATCGTGTGTGTGGCTGGATCAAGACGGACGGAAAAAT
GACGGAAGTGTTAAAAATGGGAATGGGGTGAACTTTGGGTGCTATTAAAGTGAACCGGTATCTT
TCGGTGCTATAAAACCAAAAGCGTGAACTTTCGATGCTATATAACCAATTTTGCCTTAATTTTT
TTTACTGATGGCAGAACTACAGTGGTGTGAATGCAGAAAAAAAAAATTCTATATGATGTCTTGT
TGCAGAATAATTTTGATAGATGGATTTTACAGTGTTCTAAAAGGCAGCGACCTAAATAGCGTTT
GCCATTTTGCCTATTCAGATAGCTGTCTAACCTGAAAAGTCAGAGATGACTAGATGGATTGCAG
GATGCCGAGTAGCTCGTGCCTTATAAAACACTGGAATTTTGACTGATGGAGATTATTTCTGTGC
AACTGCTTTTGTAGGATATCCTTCGTCTCTTGACTCTTTGGTTTAATCATGGGGCTACCTCAGA
GGTTCAAATGGCACTGCAGAAAGGCTTTTCACTTGTCAATATAGAAATGTGGTTGGTTGTCCTT
CCCCAGATAATTGCAAGGATCCATTCAAATAATAAAATAGTGAGAGAACTGATACAGTCATTGC
TGGTTCGAATTGGAAAGGATCATCCACAGGTTTGCATTTTTTCTTGACATAGGTTCTGGCTAAT
GACTGGGAGTCTGAGAGGCTCCACTTGAATATCTGTTCTGACTTCTGAGTGCAATTTACTACAC
CCTCTCTTCTCGAGTAGACGACATTTTAGAAAACTTGCAGTCAAACCTTGAAATCTTGAGTCGC
TAATGTATGAAAAGAATATTAAGATTTAATATATGCAAACGACATTAGTAGATTCGCTATGAAA
AATACTTCTGTGCAGTTTATATTTCATAATAATTTTATGAATATATAATTAGAAAAACAATAAT
CAGACATGTGCATCGAGACTTCCAATGTCCTAAAAGACAAATAAAAATGAACAGAGGTATTATA
TATTATGCTGTCCTACAGCAACAGTACCAAACTTGCTGTTCTTGGTTTAACGATAGGACATGTC
ATCTATTAAAAGGAATAACCTAGAGAAAATATTAAAAATTGAAGGAACTGAATTTATAGCACAG
GTCTGCAGGAGGCTTGATGAAATATTTTAAAAACAATGAGGAAATATTTGTCTATTTTCTCACT
TGTTTGTTTTCTTTCAATGTTTTACTTATGTCCTGTTTTCCTCCTTTCTCCAGAATTGAATTTG
CTTAGCCTTCTAGTAGTTATATGCATTTCAAATAGTTGTGTATATCCTAATGCTGCTGAAACCT
GCAATACCAGTTAAAACAAGTATGACTGGTGACCACCTGATAGGAACCCATTAGAAAGTTTACC
TACATTAGTCTTGACAGTTATTTTACATGACCTAACTATTGTTTTGGTTACTTTGCTATCTTAA
TCAGGCATTGATGTATCCTCTGTTGGTTGCTTGCAAATCAATAAGCATATTAAGACAACGAGCG
GCGCAAGAGGTCGTCGATAAGATCCGCCAACATAGTGGAGGTCTTGTTGATCAGGTTAGCATCA
GCACCTATGGGGTCTGTAAAAAAATATTCATTTCACTCCTGATATTTCTGTGAATGTTCGTTGT
TCCAGGCACAGCTTGTTTCAAAGGAACTGATACGAGTTGCCATTCTGTGGCATGAGATGTGGCA
TGAGGCTCTTGAGGAAGCTAGCAGGATGTATTTTGGTGAGCACAATATTGAGGGAATGCTTGCA
GTGCTTGAACCATTGCATGCAATGCTCGAGAGGGGTCCTGAGACAATAAAAGAAAATACTTTCA
TTCAGGTGGCGACATCTTCAAAACTTAGTACCCTATGCCTTAAATACTTTACTGTGACACCAAT
CCAGTTCTTCCTGGAATTTGGGTTGTTTTTCATATTACTTTCAGTTTGTCTTAAGAAATAGGTC
ACCTTTTGTACCTTAATGTCTTTGGTAAATAAGTTTATCCTGTGAAGTGTTGGATAATAACTTA
TATCATCATAAACTTTCCAGGCTTATGGTCATGAATTACTGGAAGCCCACGAATGCTGTTTAAA
ATATCGGGCTACAGGAGAGGATGCTGAGTTAACTAAGGTACATCAGACTGTTAGTGCAAGATAA
GTTATGTTGGTTCCTTCATGGATATTGGTTGAAGTTAACATTTTTATTGTTTTTTAGGCATGGG
ATTTGTATTACCATGTTTTCAGAAGAATAGACAAACAGCTTCCAAGTCTTACAACTTTGGATTT
GCAC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021