Detail information of BGIOSGA031418_circ_ag.1


General Information
CircRNA Name BGIOSGA031418_circ_ag.1
ID in PlantcircBase osi_circ_008695
Alias Chr10:23877309_23879866(MH63RS2), Chr10:24375607_24378164(ZS97RS2), Chr10:23877309_23879866(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 21011034-21013592  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ag-circRNA
Identification method CIRCexplorer2, CIRCexplorer2, CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA031418_circ_ag.2 BGIOSGA031418_circ_ag.3
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-TA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTCACACGGATAGTGGAACAGTGATGCTGAAATCCGCTCCTTATTTGGGTTTATCACGGCCCT
GTGCTCAACACTTCTGAACTTTCCGTTACTTAGGATcctcaagtgtgtcgccaatgttagcaat
aagtgcaccatttggagcatctatggagaaccacttgccatctttcttgatctgcaggccctgc
acattgtt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTCAAGTGTGTCGCCAATGTTAGCAATAAGTGCACCATTTGGAGCATCTATGGAGAACCACTT
GCCATCTTTCTTGATCTGCAGGCCCTGCACATTGTTAATCTCGAGCAGCAGTGTCAGGCCACCC
GCATCAGAGTGTGGCGAAAGGCCCATCACCTTGTCAGCTTGCCGGCATGGTGGGTAATAGGCCA
TCCTTAAGCCTCGAGGCTGCTCTTCAAATAAATCTAAAAGTGACTCTGGCTTAGCGCCCACAGC
CTTAGCCATGAACTCAAACAAGCAGAGTGCCAGGCTTTTAGTCTCTGATGAGTATGCATCAATG
GATTGCCTATTTCCAGACATCTCCAGTTAAGAAGAGACAGATGCCTATCAAAAGCTAAATTGCA
CAGTTTTTTTTTTTTTTGGTAGATCACCTGAAAGATGCTGGAGAAGTGGGCCAGAACCTTAGGT
CCCTTGAATCGCTAGGATGGACATGAAGATACAGCATGTCTGCCCAGTCAAGTTTCTGGTCCTC
AGAGAAAACAAAGCTCTGTCCATAGCCTTCTAGGCTANTTCGGTAGCTGTGTGTACTCCTTCTT
GGTGTCCAGTGGCTGGCTAAAGAAATCAACAATGTCTCTCTTCAGGTTTGCAATCACTTCATCT
GGCACTCCATGGTTAATGAGCTGTAGTTTATTCCAAAAGTAAATGTTTCCATTATACTAGTTGC
ACAGCTCAAACTGAGCTAGAGCTACCTTACAGGACATGAATTTATTCATTTTCTGCCCACAACT
TTATTTGATTATCTGTAGCGTCTTTAATCAATTCAAACATTTGTATATACAGTATGCATTTGCA
AATAGGTATCTGTTGCTTTCCGAAGATGAAATGCCAAGAACCTAAAGTTACATACCAGAAAGAA
CCCCCAATACTGGCAGGCAGATCTCAGCTTCACACACTCCTCTTCTGATGATTGCGGACAAAGC
AATTTCTTGAGATCGATGATCGGAATCGCCATGTCACCTTGGTAGTTGTTGATGACCTCCTCAG
AACTAGCCTCTGGTCTGATGTACCTTTCAGGTATGTGTTCATCTGGATCATTGCAAATTTCTGC
AAGCGCCTGCACATTAGGCACTGGGAGAGAACCAACGGATCTTGCTCCCGCCATTGCAATTCCC
AGTTTCTGCACTAAGTGTTTTCTTTTCTTTTCCTTTTTTGGCAAGCAGTTGTTCTAGGCTGTAT
ACTGCATATAACGTGTAGAATATACCATATTTATAGACCTTCAGAAGAACACTCACTTGATTTT
ATGGTTTACTGTTTAGGTATCCAGGTGTTTACACTAGCTAAATCATGCCTTTTTTTTTTGAAGT
AAAAGGTAGAGAGTCTCTACCTTATGGCATTAGAGGAACACATCTATGTCATTAGAGGAACACA
TCTATGTCAAAAGGGATTTTTTTTAAAGATAATGGATAGAAAAACTGGTGGATATAGATGGCCA
ACTGAAAGCAACACATACAGTATCAGAGACGGGGAAGGCAGAGTCTCTTATCCTGATATGGCTT
CAAGCTCTTCAATTGTAGTACACTATCTTCCATCTTCACGTCAAAAGAGCCCTTGGAATTTTCT
CCATCAAGTGTGACTCGCCTGCCATCAGCGATGACTAACCATGGAAAAAAGCAGGGTGATGTTC
TCAAATTCCAATCACCTTGTCTGTCTGCTTCAACTGATGTGAACAGCTCTACCATTCCTCTCTC
AAAGAAGAAAAGGTTGAATCATGCTACATAACAATCATTCTCTCTTAATTCTAAATAAGAGAAC
ATGACATCCTACGTGCATATTTAGTTGTTGCTGTTTTCAACCTTACCAAATTTTGATATTGCCA
AAGTTTGGTAAGGCAACAAACTAAACACACTTCAACCATTACTATCTTATTAAATTTTGGCAGC
TCTAGAAGCTTCTTTTCTTAAAACTCTACTAGAATTTGGTAAAGACATCAAACTAAACAAAGCC
AACGCTACCGAAATGTAGTAATGCCAAAGTGTGCCAAAATTTAGCATGGAAGATGGTGTACCTA
ATTTGTTAGTCTGAACTGAAATTCTATTATCGTACAGTTAATTCTTCTAGGCATCAATGTTTAT
TTTTTGGATGTTTGCATCATAACCTGAGTACGGGCAGTTCCTGATATATGGGACAAGACTCAAA
ATATCAGGTAAATCATCCTCATAACACAGGATTATTGGACACCTCTAGATATAATAAGCAGCAA
ATCTCAAGGACACAGCCTTGAAGCAGCTTCATCTCAGTATTTCACTACACTACTACAGGCATCG
TGGTCATGGCTGCTATTCCAACTTCAACATCTCCAGTCTGTTCTTTCCATCAAGCTGTTGTGTG
AAGAATTGTGTCATGAAATCAAGGTAACTAATTGATCTGTAATTCACTTTACCATCTTTCACAA
ATTCCGTCAGAGGTCTGATCACCATATTCTCACACGGATAGTGGAACAGTGATGCTGAAATCCG
CTCCTTATTTGGGTTTATCACGGCCCTGTGCTCAACACTTCTGAACTTTCCGTTACTTAGGAT
Conservation Information
Conserved circRNAs osa_circ_007984 osa_circ_007990
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021