Detail information of BGIOSGA031418_circ_ag.2


General Information
CircRNA Name BGIOSGA031418_circ_ag.2
ID in PlantcircBase osi_circ_008696
Alias Chr10:23877719_23880405(MH63RS2), Chr10:24376017_24378703(ZS97RS2), Chr10:23877719_23880405(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 21011444-21014131  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ag-circRNA
Identification method CIRCexplorer2, CIRCexplorer2, CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA031418_circ_ag.1 BGIOSGA031418_circ_ag.3
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAAAAGAGCCTCTGGCTTAGCGCCCACAGCCTTAGCCATGAACTCAAACAAGCAGAGTGCCAGG
CTTTTAGTCTCTGATGAGTATGCATCAAGGGATCGCcctgaaagatgctggagaagtgggccag
aaccttaggtcccttgaatcgctaggatggacatgaagatacagcatgtctgcccagtcaagtt
tctggtcc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGAAAGATGCTGGAGAAGTGGGCCAGAACCTTAGGTCCCTTGAATCGCTAGGATGGACATGA
AGATACAGCATGTCTGCCCAGTCAAGTTTCTGGTCCTCAGAGAAAACAAAGCTCTGTCCATAGC
CTTCTAGGCTANTTCGGTAGCTGTGTGTACTCCTTCTTGGTGTCCAGTGGCTGGCTAAAGAAAT
CAACAATGTCTCTCTTCAGGTTTGCAATCACTTCATCTGGCACTCCATGGTTAATGAGCTGTAG
TTTATTCCAAAAGTAAATGTTTCCATTATACTAGTTGCACAGCTCAAACTGAGCTAGAGCTACC
TTACAGGACATGAATTTATTCATTTTCTGCCCACAACTTTATTTGATTATCTGTAGCGTCTTTA
ATCAATTCAAACATTTGTATATACAGTATGCATTTGCAAATAGGTATCTGTTGCTTTCCGAAGA
TGAAATGCCAAGAACCTAAAGTTACATACCAGAAAGAACCCCCAATACTGGCAGGCAGATCTCA
GCTTCACACACTCCTCTTCTGATGATTGCGGACAAAGCAATTTCTTGAGATCGATGATCGGAAT
CGCCATGTCACCTTGGTAGTTGTTGATGACCTCCTCAGAACTAGCCTCTGGTCTGATGTACCTT
TCAGGTATGTGTTCATCTGGATCATTGCAAATTTCTGCAAGCGCCTGCACATTAGGCACTGGGA
GAGAACCAACGGATCTTGCTCCCGCCATTGCAATTCCCAGTTTCTGCACTAAGTGTTTTCTTTT
CTTTTCCTTTTTTGGCAAGCAGTTGTTCTAGGCTGTATACTGCATATAACGTGTAGAATATACC
ATATTTATAGACCTTCAGAAGAACACTCACTTGATTTTATGGTTTACTGTTTAGGTATCCAGGT
GTTTACACTAGCTAAATCATGCCTTTTTTTTTTGAAGTAAAAGGTAGAGAGTCTCTACCTTATG
GCATTAGAGGAACACATCTATGTCATTAGAGGAACACATCTATGTCAAAAGGGATTTTTTTTAA
AGATAATGGATAGAAAAACTGGTGGATATAGATGGCCAACTGAAAGCAACACATACAGTATCAG
AGACGGGGAAGGCAGAGTCTCTTATCCTGATATGGCTTCAAGCTCTTCAATTGTAGTACACTAT
CTTCCATCTTCACGTCAAAAGAGCCCTTGGAATTTTCTCCATCAAGTGTGACTCGCCTGCCATC
AGCGATGACTAACCATGGAAAAAAGCAGGGTGATGTTCTCAAATTCCAATCACCTTGTCTGTCT
GCTTCAACTGATGTGAACAGCTCTACCATTCCTCTCTCAAAGAAGAAAAGGTTGAATCATGCTA
CATAACAATCATTCTCTCTTAATTCTAAATAAGAGAACATGACATCCTACGTGCATATTTAGTT
GTTGCTGTTTTCAACCTTACCAAATTTTGATATTGCCAAAGTTTGGTAAGGCAACAAACTAAAC
ACACTTCAACCATTACTATCTTATTAAATTTTGGCAGCTCTAGAAGCTTCTTTTCTTAAAACTC
TACTAGAATTTGGTAAAGACATCAAACTAAACAAAGCCAACGCTACCGAAATGTAGTAATGCCA
AAGTGTGCCAAAATTTAGCATGGAAGATGGTGTACCTAATTTGTTAGTCTGAACTGAAATTCTA
TTATCGTACAGTTAATTCTTCTAGGCATCAATGTTTATTTTTTGGATGTTTGCATCATAACCTG
AGTACGGGCAGTTCCTGATATATGGGACAAGACTCAAAATATCAGGTAAATCATCCTCATAACA
CAGGATTATTGGACACCTCTAGATATAATAAGCAGCAAATCTCAAGGACACAGCCTTGAAGCAG
CTTCATCTCAGTATTTCACTACACTACTACAGGCATCGTGGTCATGGCTGCTATTCCAACTTCA
ACATCTCCAGTCTGTTCTTTCCATCAAGCTGTTGTGTGAAGAATTGTGTCATGAAATCAAGGTA
ACTAATTGATCTGTAATTCACTTTACCATCTTTCACAAATTCCGTCAGAGGTCTGATCACCATA
TTCTCACACGGATAGTGGAACAGTGATGCTGAAATCCGCTCCTTATTTGGGTTTATCACGGCCC
TGTGCTCAACACTTCTGAACTTTCCGTTACTTAGGATCTGTACATATCAATAGCACATCACTCA
CATCAGTACAAAGGTGCAAGAGAGGTAGGCCATCCAACAACAATTTTCAGAAGCTTTTAGGTAC
GTTCTTTCTTCTTTGGTGCTTCCACAAGTTCTTTTTTTTAGATAATGGAAGCTTTTATTGAACT
CATCCAGTTACATCAAAGTTCTTTGACAAGTGAAAGCATAATTAGTTCTTGGTCGGTACCTCAA
GTGTGTCGCCAATGTTAACGATGAATGCACCATTCGGAGCGTCTACGGATAACCACTTGCCATC
TTTCTTGATCTGCAGGCCCTGCACGTCGTTAACCTGGAGCAGCAGTGTTAGGCCAACCACATCA
GAGTGCGGCGAAATGCCCATCACCTTGTCAGATTGCAGGCACGGTGGGTAGTAGGTCATCCTTA
AGCCTTGAGGCTGCTCTTCAAATATGCCTAAAAGAGCCTCTGGCTTAGCGCCCACAGCCTTAGC
CATGAACTCAAACAAGCAGAGTGCCAGGCTTTTAGTCTCTGATGAGTATGCATCAAGGGATCGC
Conservation Information
Conserved circRNAs osa_circ_007987 osa_circ_007985
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021