Detail information of Os01g0805700_circ_g.4


General Information
CircRNA Name Os01g0805700_circ_g.4
ID in PlantcircBase osa_circ_004462
Alias NA
Organism Oryza sativa
Position chr1: 34154725-34157615  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os01g0805700
Parent gene annotation Similar to plectin-related. (Os01t0805700-01);Similar to plectin
-related. (Os01t0805700-02)
Parent gene strand -
Alternative splicing Os01g0805700_circ_g.2 Os01g0805700_circ_g.3 Os01g0805700_circ_g.5 Os01g0805700_circ_g.6 Os01g0805700_circ_g.7 Os01g0805700_circ_g.8 Os01g0805700_circ_g.9 Os01g0805700_circ_g.10 Os01g0805700_circ_g.11 Os01g0805700_circ_g.12 Os01g0805700_circ_g.13 Os01g0805700_circ_g.14 Os01g0805700_circ_g.15 Os01g0805700_circ_g.16 Os01g0805700_circ_g.17 Os01g0805700_circ_g.18
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os01t0805700-02:8
Os01t0805700-01:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGAATACCTGCTTGAGGAAGCTAGCTAACTTCTTTACTTCAGCCTTTTCATATATTAACTCCCC
TTCTCTTTGGGTCAGCTGGACTGCTAATGCTTCCACcttcattgtggtcgagtatgactctctt
gcttttgtagaccatccttttcgaagctttattctcatttttccgatatgaaatgcatggacag
agttcgat
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 876
Transcript exons: 34154725-34154859,34155133-34155191,34155884-34156000,34
156190-34156367,34156457-34156540,34156875-34156943,3415
7127-34157267,34157523-34157615
CTTCATTGTGGTCGAGTATGACTCTCTTGCTTTTGTAGACCATCCTTTTCGAAGCTTTATTCTC
ATTTTTCCGATATGAAATGCATGGACAGAGTTCGATGAGTAATCATTCCCATTCATTTGGGTGA
CAACCACATTAAACTCCACATCTGCTCTTTTCATTAGAGACTCCACATAATGTTCCAGTCCGGC
AGCAGGATTTATAGGTCCCATTGTTTGTATCGTAACTTTCTCTGCATTTAAAACTATCTCTGCC
TGTAACAGTCGGCCAACATCAAATGGTTCTGGAGCATATGTAGGTTTTGTTGCTCCCAATATAA
GATTTCTATTGCCTCCAGAAATTACACGGTACCATTGAGTTGGACAGCTGCTGATGTCTGGAGC
ATCATCAAATCGAGGGATAATACAAAACTGTGATCCAAGGATATCAGAACCTTCAAGATCATAG
AGGTCAGAGCTATCTTCTTCTAGCCTCTTGATCATTGCAAGCTCTTTCATTAGCTGATTGCAAA
GCTGATTTTTCTCTGCAATGAGAGTTCGCAGTGCCTTAAGCTCAAATTCCATGTCCATTACCTT
GCTTGGCTGGTGTAGCATTTTTATTCTTCTAGCCTCACGGACCTCTTTCCTGAGTCCCTCTATC
TCCTCCTTTTCCCTGCTACTTGATGCTGCATCATGCTCCTGCAATCCTTTCTCGACTATAGCAA
TTGCAGTTCTGGCCTTCTCAATTTCCGCTAATGCAAGAGCCCTTTCCTCCTCTGCCACCTTCCG
GGCATCTTCAGTAGCCTGCTTGAGGAAGCTAGCTAACTTCTTTACTTCAGCCTTTTCATATATT
AACTCCCCTTCTCTTTGGGTCAGCTGGACTGCTAATGCTTCCAC

Genomic sequence CTTCATTGTGGTCGAGTATGACTCTCTTGCTTTTGTAGACCATCCTTTTCGAAGCTTTATTCTC
ATTTTTCCGATATGAAATGCATGGACAGAGTTCGATGAGTAATCATTCCCATTCATTTGGGTGA
CAACCACCTACAAGGAAACACGGAAGCAAACCACACTGATTTTTCCACAAATAACAAATTCAAA
GCTTGACAATATTCATGTCAACTACAATCAAACTCAGGCTGCAGTTTCACTTCAGTCTTAAGTA
CTTTGGGTGGGTGGGGGGGAGGGGGGGCTGATTGGAGTTTGGACATTGTGCCAAGATCCCCCAC
ATCCAAATAAAAATGGTGATTGTGGATTTAGCAAAATTAGAGAGGTGGCTTCTTAAATTAGTAT
AAGACACAGGAGAAGAATCCATACATTAAACTCCACATCTGCTCTTTTCATTAGAGACTCCACA
TAATGTTCCAGTCCGGCAGCTGTTCAAAAAGTATGTCAAAGTCAGCTATTTAAGTGCAACTTTG
GTGAAACCACGAGCTTGTATTCCCTCAATTCCTTAATATATCTGATATCTCATTGTTTTTCGGA
TGGTGTGTGTGCTCTAGTCCATAATTATAAACAACACTGGAAATAGGTAAAGGGATGGATGGAT
ATACCACAAAAAAAGATGATAAAAGGTCATCTCAAAACTGTAGAATGAGGTATTTGGGAACACA
ATTTGAGTGCTCTAAAGATGTGTATTTGAAAAAGGAGGGAAAATCGAATGTCCTGCTGCACTTC
TATTGTAGAAAAAAAAAACGGGGGCTTTTGCCCTGAGAAAGCATGTGCCATATGGCAGAATGCA
TCATGGGGCTAATCCATATGATATGATAGGATAAACCATGCATTACTTACACAGTTAAGCAATT
AAAGTATTATGCCACAATATATGAAAATAGATACTCCATACTATGGCATTAAGCTTAGTTCTAC
TTTTAACTTCCAAAGTTCGAAACAAATATCAAGAACATGTAGACAAAAAAGAAATGTGAAATAA
GCTACAGAAAATATTGCAAGAGAAATGGACAGTTTAAATACTTCTGAAAGAAACGCAACTGTGC
ATATCAATCTACCTGATAAAATAAATAGGATCACCATTAGAAATTTTAAGAGAGCAGTGGGAAG
GCCTAACCAGGATTTATAGGTCCCATTGTTTGTATCGTAACTTTCTCTGCATTTAAAACTATCT
CTGCCTGTAACAGTCGGCCAACATCAAATGGTTCTGGAGCATATGTAGGTTTTGTTGCTCCTGC
AGAAAGCGATCTCAACATCTTTAGTATATGGTAATAAGTGAGAAGAAAACAATGATGTACAGTT
TTTACATGACTGCATAATAAGCAAAAAGATATTACTGCAATGATTGCTTTGCAAATGAATGATA
TTAAAATGGATTTAGGAGAACCCACTAGCTCCATGTAATGTTGATCTGATAACATACCCAATAT
AAGATTTCTATTGCCTCCAGAAATTACACGGTACCATTGAGTTGGACAGCTGCTGATGTCTGGA
GCATCATCAAATCGAGGGATAATACAAAACTGTGATCCAAGGATATCAGAACCTTCAAGATCAT
AGAGGTCAGAGCTATCTTCTTCTAGCCTCTTGATCATTGCAAGCTGGACATGAAAAGAAAAAGG
ATGGCTATAACTCAACAACACTAAAAACAAGAAAACACAAATAATACAAACCATGTCAAAAGAA
TTACCTCTTTCATTAGCTGATTGCAAAGCTGATTTTTCTCTGCAATGAGAGTTCGCAGTGCCTT
AAGCTCAAATTCCATGTCCATTACCTGTGATGTTTTTTTCATGGCCATTATTAATCAGGGTATG
TGAATATAAGCAAATCACCATGAGCTGCTCTATTTCATTACTAGCTTTATGAAAGAATAGACAC
TGCAGATTTATTTTTTTAAAAAAAAGTGTTAAAAAAAAATCAAATAACATAGCATAAGAAAGGG
CATGAAATTTTTATAGAACTTAAGACATTGAGGAAGACGGTCTCTATTTGAACTCACTGGAGGA
AAGAGAAGAAAAGGGTTAATTAACATTAAAGATCTAGAGAAATACACAAAAAAGAAACTGCTAT
TCCATAAATTAAACATGAGAATTGATAGTGAAACAAACCTTGCTTGGCTGGTGTAGCATTTTTA
TTCTTCTAGCCTCACGGACCTCTTTCCTGAGTCCCTCTATCTCCTGGCCAGGAAAAAAAGGTAC
ACAATAAATGTGGCAGCAACTCAAAGCACAAGGGTAACAATCATACAATAGTCACTTGTCAGAA
TGTGAATCACTCAGGAGCACGGTACATGAAATTTACTACAAAACAAGTTCACAAAAAGGATACA
GAAATATCCATGTTCGTTAATATTGAGAAAGCACCTCCTTTTCCCTGCTACTTGATGCTGCATC
ATGCTCCTGCAATCCTTTCTCGACTATAGCAATTGCAGTTCTGGCCTTCTCAATTTCCGCTAAT
GCAAGAGCCCTTTCCTCCTCTGCCACCTTCCGGGCATCTTCAGTAGCCTAAGACACAGAAGAAA
ACAGTAGCATTATTACTAACCAAACAATGGAACCATACTTTTAACTTGATACACACATTAACAG
TTAAGACAAATATCATATCCACCCTTGACCATTTAATGTGGCGATATTATAAGGAAAAGAATAG
TATTTATCTTTATGAGGCCGGACATGTCATATTGGCTTTCAGGCTTCCAGGTTTGGTACATTAC
ACAATCTAACTAGGTCACAGATAGCTAATTAGATCATTAAGAATACCTGCTTGAGGAAGCTAGC
TAACTTCTTTACTTCAGCCTTTTCATATATTAACTCCCCTTCTCTTTGGGTCAGCTGGACTGCT
AATGCTTCCAC
Conservation Information
Conserved circRNAs NA
PMCS 0.214506777
Functional Information
Coding potential Y
Potential coding position 34156498-34154800(+)
34156897-34154727(-)
34154769-34157565(-)
Potential amino acid sequence MRVRSALSSNSMSITLLGWCSIFILLASRTSFLSPSISSFSLLLDAASCSCNPFSTIAIAVLAF
SISANARALSSSATFRASSVACLRKLANFFTSAFSYINSPSLWVSWTANASTFIVVEYDSLAFV
DHPFRSFILIFPI*(+)
MLHQPSKVMDMEFELKALRTLIAEKNQLCNQLMKELAMIKRLEEDSSDLYDLEGSDILGSQFCI
IPRFDDAPDISSCPTQWYRVISGGNRNLILGATKPTYAPEPFDVGRLLQAEIVLNAEKVTIQTM
GPINPAAGLEHYVESLMKRADVEFNVVVTQMNGNDYSSNSVHAFHIGKMRIKLRKGWSTKARES
YSTTMKVEALAVQLTQREGELIYEKAEVKKLASFLKQATEDARKVAEEERALALAEIEKARTAI
AIVEKGLQEHDAASSSREKEEIEGLRKEVREARRIKMLHQPSKVMDMEFELKALRTLIAEKNQL
CNQLMKELAMIKRLEEDSSDLYDLEGSDILGSQFCIIPRFDDAPDISSCPTQWYRVISGGNRNL
ILGATKPTYAPEPFDVGRLLQAEIVLNAEKVTIQTMGPINPAAGLEHYVESLMKRADVEFNVVV
TQMNGNDYSSNSVHAFHIGKMRIKLRKGWSTKARESYSTTMKVEALAVQLTQREGELIYEKAEV
KKLASFLKQATEDARKVAEEERALALAEIEKARTAIAIVEKGLQEHDAASSSREKEEIEGLRKE
VREARRIKMLHQPSKVMDMEFELKALRTLIAEKNQLCNQLMKELAMIKRLEEDSSDLYDLEGSD
ILGSQFCIIPRFDDAPDISSCPTQWYRVISGGNRNLILGATKPTYAPEPFDVGRLLQAEIVLNA
EKVTIQTMGPINPAAGLEHYVESLMKRADVEFNVVVTQMNGNDYSSNSVHAFHIGKMRIKLRKG
WSTKARESYSTTMKVEALAVQLTQREGELIYEKAEVKKLASFLKQATEDARKVAEEERALALAE
IEKARTAIAIVEKGLQEHDAASSSREKEEIEGLRKEVREARRIKMLHQPSKVMDMEFELKALRT
LIAEKNQLCNQLMKELAMIKRLEEDSSDLYDLEGSDILGSQFCIIPRFDDAPDISSCPTQWYRV
ISGGNRNLILGATKPTYAPEPFDVGRLLQAEIVLNAEKVTIQTMGPINPAAGLEHYVESLMKRA
DVEFNVVVTQMNGNDYSSNSVHAFHIGKMRIKLRKGWSTKARESYSTTMK(-)
MVYKSKRVILDHNEGGSISSPADPKRRGVNI*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017