Detail information of Os01g0805700_circ_g.14


General Information
CircRNA Name Os01g0805700_circ_g.14
ID in PlantcircBase osa_circ_004471
Alias NA
Organism Oryza sativa
Position chr1: 34156190-34157615  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os01g0805700
Parent gene annotation Similar to plectin-related. (Os01t0805700-01);Similar to plectin
-related. (Os01t0805700-02)
Parent gene strand -
Alternative splicing Os01g0805700_circ_g.2 Os01g0805700_circ_g.3 Os01g0805700_circ_g.4 Os01g0805700_circ_g.5 Os01g0805700_circ_g.6 Os01g0805700_circ_g.7 Os01g0805700_circ_g.8 Os01g0805700_circ_g.9 Os01g0805700_circ_g.10 Os01g0805700_circ_g.11 Os01g0805700_circ_g.12 Os01g0805700_circ_g.13 Os01g0805700_circ_g.15 Os01g0805700_circ_g.16 Os01g0805700_circ_g.17 Os01g0805700_circ_g.18
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os01t0805700-01:5
Os01t0805700-02:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGAATACCTGCTTGAGGAAGCTAGCTAACTTCTTTACTTCAGCCTTTTCATATATTAACTCCCC
TTCTCTTTGGGTCAGCTGGACTGCTAATGCTTCCACccaatataagatttctattgcctccaga
aattacacggtaccattgagttggacagctgctgatgtctggagcatcatcaaatcgagggata
atacaaaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCAATATAAGATTTCTATTGCCTCCAGAAATTACACGGTACCATTGAGTTGGACAGCTGCTGAT
GTCTGGAGCATCATCAAATCGAGGGATAATACAAAACTGTGATCCAAGGATATCAGAACCTTCA
AGATCATAGAGGTCAGAGCTATCTTCTTCTAGCCTCTTGATCATTGCAAGCTGGACATGAAAAG
AAAAAGGATGGCTATAACTCAACAACACTAAAAACAAGAAAACACAAATAATACAAACCATGTC
AAAAGAATTACCTCTTTCATTAGCTGATTGCAAAGCTGATTTTTCTCTGCAATGAGAGTTCGCA
GTGCCTTAAGCTCAAATTCCATGTCCATTACCTGTGATGTTTTTTTCATGGCCATTATTAATCA
GGGTATGTGAATATAAGCAAATCACCATGAGCTGCTCTATTTCATTACTAGCTTTATGAAAGAA
TAGACACTGCAGATTTATTTTTTTAAAAAAAAGTGTTAAAAAAAAATCAAATAACATAGCATAA
GAAAGGGCATGAAATTTTTATAGAACTTAAGACATTGAGGAAGACGGTCTCTATTTGAACTCAC
TGGAGGAAAGAGAAGAAAAGGGTTAATTAACATTAAAGATCTAGAGAAATACACAAAAAAGAAA
CTGCTATTCCATAAATTAAACATGAGAATTGATAGTGAAACAAACCTTGCTTGGCTGGTGTAGC
ATTTTTATTCTTCTAGCCTCACGGACCTCTTTCCTGAGTCCCTCTATCTCCTGGCCAGGAAAAA
AAGGTACACAATAAATGTGGCAGCAACTCAAAGCACAAGGGTAACAATCATACAATAGTCACTT
GTCAGAATGTGAATCACTCAGGAGCACGGTACATGAAATTTACTACAAAACAAGTTCACAAAAA
GGATACAGAAATATCCATGTTCGTTAATATTGAGAAAGCACCTCCTTTTCCCTGCTACTTGATG
CTGCATCATGCTCCTGCAATCCTTTCTCGACTATAGCAATTGCAGTTCTGGCCTTCTCAATTTC
CGCTAATGCAAGAGCCCTTTCCTCCTCTGCCACCTTCCGGGCATCTTCAGTAGCCTAAGACACA
GAAGAAAACAGTAGCATTATTACTAACCAAACAATGGAACCATACTTTTAACTTGATACACACA
TTAACAGTTAAGACAAATATCATATCCACCCTTGACCATTTAATGTGGCGATATTATAAGGAAA
AGAATAGTATTTATCTTTATGAGGCCGGACATGTCATATTGGCTTTCAGGCTTCCAGGTTTGGT
ACATTACACAATCTAACTAGGTCACAGATAGCTAATTAGATCATTAAGAATACCTGCTTGAGGA
AGCTAGCTAACTTCTTTACTTCAGCCTTTTCATATATTAACTCCCCTTCTCTTTGGGTCAGCTG
GACTGCTAATGCTTCCAC
Conservation Information
Conserved circRNAs NA
PMCS 0.123959134
Functional Information
Coding potential Y
Potential coding position 34156498-34156292(+)
34156897-34157565(-)
Potential amino acid sequence MRVRSALSSNSMSITLLGWCSIFILLASRTSFLSPSISSFSLLLDAASCSCNPFSTIAIAVLAF
SISANARALSSSATFRASSVACLRKLANFFTSAFSYINSPSLWVSWTANASTQYKISIASRNYT
VPLSWTAADVWSIIKSRDNTKL*(+)
MLHQPSKVMDMEFELKALRTLIAEKNQLCNQLMKELAMIKRLEEDSSDLYDLEGSDILGSQFCI
IPRFDDAPDISSCPTQWYRVISGGNRNLILGGSISSPADPKRRGVNI*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017