Detail information of Os11g0189600_circ_g.7


General Information
CircRNA Name Os11g0189600_circ_g.7
ID in PlantcircBase osa_circ_008749
Alias NA
Organism Oryza sativa
Position chr11: 4547915-4552146  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os11g0189600
Parent gene annotation Similar to Cycloartenol synthase. (Os11t0189600-01);Similar to c
DNA clone:J013062J12, full insert sequence. (Os11t0189600-02)
Parent gene strand +
Alternative splicing Os11g0189600_circ_g.4 Os11g0189600_circ_g.5 Os11g0189600_circ_g.6 Os11g0189600_circ_g.8 Os11g0189600_circ_g.9
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os11t0189600-01:7
Os11t0189600-02:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGGGAATAGCGCTACAGTTAGAAAGGCATGTGACTTTCTCTTGTCAAAACAGCTTCCTTCGGGT
GGCTGGGGCGAGAGCTATTTGTCATGTCATGACGAGatttacgatggcagccaggtgtgggacg
caggtttgacagttgaggcccttgtggctactgaccttgtcaaagagcttggaccaactcttaa
acgagcgc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATTTACGATGGCAGCCAGGTGTGGGACGCAGGTTTGACAGTTGAGGCCCTTGTGGCTACTGACC
TTGTCAAAGAGCTTGGACCAACTCTTAAACGAGCGCATTCCTTCCTTAAGAATTCGCAGGTATA
TATAATCATGCCACTAGACCTCAGTAATTTGTCCATAAAATGTCAATTTCAATCAGCATTACTT
ACTGGTTATGTATAATAAGGAAGCTATTTTCTATATGAAAGTTGCTTGACAATTGCCCCCGAGA
TTTCAACCGCTGGTATCGCCATATATCCAAAGGTGGATGGACATTTACAACAGCTGATGATGGC
TGGCAAGTTTCAGATTGCACGGCGACAGCACTGAAGGTAAACGATTAAATTTTCCTTATTACCA
ATATAGATGTTTTTTCATCTAATTTAATTTCTTTCCCTTTGTCTACCGAAAACGTTATGTGCTC
ATGCATATACAAAAAATAAAGTAGTAATTCTTTCAGAAGCATAACAGTTTTCCTGGACACCACT
ACTACAAAAACTCCTTTTACAGTTGCTGCAGAACTATATATTACCGCAGTAGGATAAAGAACTT
GCTGTCAAATAAATTAGTATAATGTTTGAATATATATATATATATATATATATATATATATATA
TATATATATATATATATATATAGGGGCATGCATGAATGAAAGTTATCTTTTTCATTGTCCAACC
AAATCAAGTTGAACTAAGGTACTATGGTTGTGTTTAGTTCCTGAAATTGAGGAGAAGTTTAGAG
AAAATTGGTAGTTTGGAAAAAAAAAGTTGGAAGTTTTGTGTAGGAAAGTTTTGAATGTGATGTG
ATGTGATGGAAAGTTGGGAGTTGGGGGAAGTTTGGATGTAATGTGGTGTGAACTATAGATTATT
TTCTGGAATACATAGAATAGCTGCAAATCGTATCATTATGGAAGGATAGAAAAAGAACCTCCAG
AACATGCCCAAATCAAAAGATGCATAATCACAACCCACCAAAGTCAAATTAGACGGGACCCTTA
GTGGACGAACAGTCACCCCAGCGAACGGTGGGTCCCACCTGCCCTTACTCATTCCTTATCTTCT
TTTTTTTTCTTCCTTTCCACCATCTTCTTCCCCCGACCACACGTCTGCACCAGCAGCAGCATGT
ACCGCCCGCGGCCAGTGGCGAAATCGCCACCGCGCCCAGGGGTGGATCTACAGTATTATGACCG
GTGTCAGGCGACACTGACGACTTTCGGCAAAATCTATAGCAAATTTGCTTATCCATATGTTATA
ACACCATAATTTAAATATAATTAGGATTCTATGACACCGATAGACACGTTATGACACCAATGAA
TCGATTTTCTGGATCCGCCACTGACCGCGCCTCCCCCCGCCTCCCACCCCTGCGGCGTCACAGC
ATCCTCCCGTGCTATTGCTGACCCCTGCCACTGGGGTCCTCCCAAATCCGGTCGGCAGCGCCAC
CGCCGGCCGCAACCCGCCAGGCCACCACCACGGCCGGCGACCATCCCTCTAATCCTGCCTGCCA
TGGAACATTCGAAACCCCAATCCCTAACTCAAATCCCTCCCCCACACCCCCGCCCCCGCTGCTG
GCCTCCGCCACCACCCGCTTCTCCCACCTCTCGCCATGGCCGCTTTTCACCACCCTTTTGTTTC
TCTTGACGAAGAGTTGAAGACAACGGGTGCGGATGGATCAGAGCAGAATCAATCAGCACCTTAC
GCGTGTCCTTTCATTACTTACGGTAGCAACACACGTTCATCAAATAATATAAGGATTTCGCAAA
TCAGAACAGAAACACCACTGTCAATGAAAGGACCACCATAGCACATGACAACACATGGAGGGGT
TCCTGGATCAGTATATATATATTAAGACCAGACTCTTTAGATACTAAATAATTGATTGTAAGAA
ACTGGTTGTAACTTTTAAGGGGTGGACTTTCTAGCCATAGAAAATGTGAATATGAATATTAGAG
ACTAGCTGCTATCTAGCTAGTTAACCTCAGATCATGGTTGTCTCCTTCAAATAATTAATGAGTT
GTCCAGGACATTAAAATGGCCAAATTGGATTTGAGTAAGGGTTGAAGAAAGTTTTAATTATGGA
ATAGGTTCAAGTTCAAACCAGCCAAGCAAGGGTGTGTTTAGTTCCACGTCAAAATTGGAAGTTT
GATTGAAATTGTAACGATGTCACGGAAAAGTTGAAAGTTTGTGTGTGTAGAAAAGTTCGATGTG
ATGTTTTTGGGTTCAAAGTTTGCATCTAAACACGGTGTAAAATATAACAAAATTCAAGAAAGTC
CCATCAGCATCATTAATTCTTGGGTGCAAGTTCATTATTAGTGATGTTAAATTGGAGTAAATAA
CTAGCCCAGTGCAATAGTAATTTGTTTATGCTTATTGTTGGTTCCAAATATTAAACGTTTAGCT
AATTTTCCCAACTTGAAACACATGTTGGAATTACAACAATAGGGTGTGCGAGTGCCTGCAGAAA
TACTGAGGGGGAGTGGGAGCAAATGGTCATGGAACATATAGGGCCTCCACTTTTTGCCCTCCAC
ATTTTTATATTATCTTTGTGTCATCAAGTAACACACCAGATACACATTTAGTACAGTCAGTTAA
AAAACTTGACTCCCTTGAAGTAATATTACAGTTGGCCATGCACTGTACAACATGTTTATCAATA
TCAGTTCGTAGATCCTCACATGGTTCAAGAACTCAAGATAATGAACCAACTGTACTGTCAACAT
CTTTTTTAACCAACTGTTGCATGTTGTTTTTGTTTCTTAATAAATTTCTTTGGTTTTTAAGAGT
ATCTATGCTGTTACAATTTACGTACAGGCATGTCTATTGTTATCAAGGATATCTCCTGAAATCG
TTGGTGAACCACTGGAAATTGATGCACAATACGATGCTGTTAATTGTCTGATGTCTTTGATGGT
AAACATTTTTCAATCTTCCGTCTACTATTCTACACGAGTTGTTGTAGTCAATGATCAGAATTTT
GTACAATATTCAACTTTGAAGAGCCTTGTGTCTGATATGTTTGTGTTAATTACCATTTACAGAA
TGATAATGGTGGCTTTTCAGCATTTGAACTCGTAAGGTCTAATACATGGCTGGAGGTGAGGGGT
TGATTTCTTTCAGGATGCTCCTTTGTCCTTTCCCATGTTATATATACACGTAAATCCCAATGTA
CCAAGTTATTTTTTCTGTTGCTAGCAAAAGGGGGAAGATAGCGCGCCTAAATAAGTGGACTTTG
CTAATGAATAATAATGATACCAATGCTATATGATAGCGGTACTAATCTGTCCGGGAAAAAAAAT
ACAATTGCACTCTTAACAGGACAAGAGAGAAGATCTCTAACCGTGGTAAATTTATAGAAATAAA
GTGTTGCAGTTAAAAAAAAAGGTGGATGGAGAAAATCAAGTACAACGGATCAGAACTTCAAATT
CACCCCTGTTTTGTACAATCTCAAGTAAATGGTGTCATAGAATGCAAACTTAAACAGGATAACT
GTTAACATAGTTAAATGCACATATGCATATATGTAAATTAAATGCATATCTGTTTTTCTCCCTA
ATTATATGGTCGATGAAAAAGCACAGCTACATTCATCACTGTGACTAAATTTGGCTAATACTGA
CATGTTTTGTTGGAGTTCAGCATATTAATCCTACAGAGGCATTTGGGCGTGTAATGATTGAATA
TCCGTAAGATGAGATAACCCATTGAATTTCATTTCTTATATACTTCCCTTTTTTATCGTATATA
AGACAATCCCAAACAATATGCATCTGAATTGACAGGTATGTCGAATGTACATCATCATCAATTC
AGTGTCTAGCATTATTCAAAAAACTTCACCCAGGGCACCGCAAGGAAGAGGTGGAAAATTGTAT
CAGCAAAGGTGCTAATTTCATTGAGAGTTCTCAGAGAAGCGATGGTTCATGGTATGTATTAGGA
CAGGATGCATACATAACTACAAATATGTGCGACCGATGATTTTATAAAAATCCCTACTCAATTC
TGATTAAGCTGTGTTCTTACAGGTATGGTTCTTGGGGGATTTGTTTCACCTATGCCACATGGTT
TGCAGTGACAGGATTAGTTTCTGCAGGCAGGACACTTGGGAATAGCGCTACAGTTAGAAAGGCA
TGTGACTTTCTCTTGTCAAAACAGCTTCCTTCGGGTGGCTGGGGCGAGAGCTATTTGTCATGTC
ATGACGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.121289186
Functional Information
Coding potential Y
Potential coding position 4550846-4552143(+)
4548194-4552134(-)
Potential amino acid sequence MSLMNDNGGFSAFELVRSNTWLEHINPTEAFGRVMIEYPYVECTSSSIQCLALFKKLHPGHRKE
EVENCISKGANFIESSQRSDGSWYGSWGICFTYATWFAVTGLVSAGRTLGNSATVRKACDFLLS
KQLPSGGWGESYLSCHDEIYDGSQVWDAGLTVEALVATDLVKELGPTLKRAHSFLKNSQLLDNC
PRDFNRWYRHISKGGWTFTTADDGWQVSDCTATALKACLLLSRISPEIVGEPLEIDAQYDAVNC
LMSLMNDNGGFSAFELVRSNTWLEHINPTEAFGRVMIEYPYVECTSSSIQCLALFKKLHPGHRK
EEVENCISKGANFIESSQRSDGSWYGSWGICFTYATWFAVTGLVSAGRTLGNSATVRKACDFLL
SKQLPSGGWGESYLSCHDEIYDGSQVWDAGLTVEALVATDLVKELGPTLKRAHSFLKNSQLLDN
CPRDFNRWYRHISKGGWTFTTADDGWQVSDCTATALKACLLLSRISPEIVGEPLEIDAQYDAVN
CLMSLMNDNGGFSAFELVRSNTWLEHINPTEAFGRVMIEYPYVECTSSSIQCLALFKKLHPGHR
KEEVENCISKGANFIESSQRSDGSWYGSWGICFTYATWFAVTGLVSAGRTLGNSATVRKACDFL
LSKQLPSGGWGESYLSCHDEIYDGSQVWDAGLTVEALVATDLVKELGPTLKRAHSFLKNSQLLD
NCPRDFNRWYRHISKGGWTFTTADDGWQVSDCTATALKACLLLSRISPEIVGEPLEIDAQYDAV
NCLMSLMNDNGGFSAFELVRSNTWLEHINPTEAFGRVMIEYPYVECTSSSIQCLALFKKLHPGH
RKEEVENCISKGANFIESSQRSDGSWYGSWGICFTYATWFAVTGLVSAGRTLGNSATVRKACDF
LLSKQLPSGGWGESYLSCHDE(+)
MAIPAVEISGAIVKQLRILKEGMRSFKSWSKLFDKVSSHKGLNCQTCVPHLAAIVNLVMT*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017