Detail information of BGIOSGA009272_circ_igg.1


General Information
CircRNA Name BGIOSGA009272_circ_igg.1
ID in PlantcircBase osi_circ_012455
Alias Chr02:35497853_35500318(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr2: 36924726-36927191  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA009272_circ_igg.2 BGIOSGA009272_circ_g.1 BGIOSGA009272_circ_g.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-TA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGTGGCTATATTGCAGATATATTGCTGTTGAATTTGCTTCTATATGGAAAGGGATGGGTGCGCA
CGTAGACTTGTTTTATCGAAAAGAGCTTCCTCTAAGgggtttttcgtgtggtgttgaggatcca
tggctaggaagatgctcaaggacgaggaggtggaggtggccgtcaccgacggcgggagctacga
ctacgacc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGGTTTTTCGTGTGGTGTTGAGGATCCATGGCTAGGAAGATGCTCAAGGACGAGGAGGTGGAGG
TGGCCGTCACCGACGGCGGGAGCTACGACTACGACCTGTTCGTGATCGGCGCCGGGAGCGGCGG
CGTCCGGGGCTCTCGCACCTCCGCGTCCTTCGGGGCTAAGGTTTGACTTTTCTCCTCTCCCCCG
CTCCCCATTTTTGCGAGGAAACGTGTTGGATTTTTATTTTTTTTCGTGTGATTTGATTCGGTGT
GTGGCGCGGTTCAGGTTGCGATTTGCGAGCTCCCGTTCCATCCCATCAGCTCGGATTGGCAAGG
AGGGCATGGTGGGACGTAAGCATCTGCCGATTACTTGTCTGCGTTTACATTTCTGTCGTTGAAA
GCTTGATTATGATTTAAACCAACTCTCCTCATCCCCTGGGTGAGAATGTGAGATGTTGCTGCAT
CCTAAAACCCGCATGCTCATTATTGTACATGTTGTGCTAGGTGTGTGATACGTGGTTGTGTGCC
TAAAAAGATACTGGTGTATGGTTCATCTTTCCGCGGAGAATTTGAGGTAACTGATCTTACTAAC
TTATGGAGCCAACTATTACTTGTTTGAAAAACAAGTTGGAAACATTGTGTTTAGGTTCAATGTG
CTGTGGCTTGCTGAATTATGTTCCTTTACTCAATTTTTGCAAAATTTGCTAAGCCTTACAGCCT
CCATCCTTGATCAACAGTTCATCATTCTGCGTACTGACTTGAAATCCAATAACCTATCCATTTG
AGAGCTTGTTATCATCTTTTTATACAAACTATTTCATTTAGCTTGCTTGCATCTTTGTGAGTAC
ATGTACTGAAGTGTCATTCTGGGGTGCTTATTGGAATTGCTACTGTTGTATGATTGCAGGATGC
AAAGAATTTTGGGTGGGAAATCAATGGGGACATTAACTTCAACTGGAAAAAGCTGCTGGAAAAT
AAGGTCAGAGCCGCAACCTTGGTTGGGAGAACGTTCCTGCATTATTATTTGCTCGTTATAAATG
CTTACAACCCAATATTGTAAAAACCGTTCTCTGCAGACTCAAGAAATTGTTAGACTAAATGGAG
TATACCAGAGGATTCTTGGCAATTCTGGTGTGACAATGATTGAAGGGGCAGGCAGTTTGGTTGA
TGCTCATACAGTTGAAGTCACAAAGCCAGATGGTTCAAAGCAAAGATATACAGCAAAGCACATA
TTGATAGCAACTGGTAGCCGAGCTCAACGTGTCAACATTCCTGGGAAGGTAACAAAATTCTCTG
CCAGCCTTTGCAAACTTGTTTCTTATGTCTGGCAAGTAGTTAATAGCATTGTTACTTGTTTGAC
AACTTCTTTATATTCCCCAACTTTTGTGCCTGAAACCTTTGGATTGACCTCGTGATGCTGATTT
CCATGCCATCTTCTGTATTTGTTGTGATACTGTTGCACATCAATAATTATTTGTGATAGCCAGT
TTGATATGGCTGAACTTTTAGGGTTAATCCCCTTTAGATATTTCTTATTACTTGACCCAAAATA
CAATACTCCCTCTATTCCATAATATAAGGCACAACTACTTTTTAAAGCTGTTCCATAATATAAG
GCATACATGCATGCATGCCATTAACTAACACATATTCTCCACTAAAATATTATTATTTAAATTC
TCCACTATCAAGATCTCTAATTTTATTGGGTGCATGTATTACATTTATTAGATTAATCTAAACT
ATGAGGTGATAATAATTATTTCTTGGTCTTTGGGTTGAAGGTGGTTGTGCCTTATATTTTGGAA
TGGAGGGAGTACTAGGCTACCTTTATATACTGAGGTGCCTCTAGATAAGGGAAACGGATACAAA
CTATTAACCTGATACTACTAGGACTCTTATAACAAAACTATGAAACTCTAATAAGGAGCTTATT
AGGACTTTCCAACTGCTGAAGCACTTGCCAAATCTGACTTATCTCTATTACGCCGCCGCTGATA
TACTATACCATAACGTCCAGCCATGACACAGTTGGTGTGGATATGACATTACAAGACTTCCTTT
GAGCCAGTTCAAGAGGGACAAAGCATTATCTTTAATCCAACAAATTATACTTAGCCATATATAT
GTGCTGGTTACATCACTGATTTTCTTTTCCCTTTAGTTTTTTTTTAAATGTCCTTTGGTGTATT
ATTTTGGCTGACACTGATAAGAACCCGCTTGCAGGAGTTAGCTATTACTTCAGATGAGGCCTTA
AGTTTGGAGGAGCTACCAAAACGTGCTGTAATCCTCGGTGGCGGGTATGTCTACACTCTAGGGT
GCATTTATGTACTATGTATTGTTATGTCATTCCAACTATCTCGGACTTGCATTTGTTCATGTGG
TGGCTATATTGCAGATATATTGCTGTTGAATTTGCTTCTATATGGAAAGGGATGGGTGCGCACG
TAGACTTGTTTTATCGAAAAGAGCTTCCTCTAAG
Conservation Information
Conserved circRNAs osa_circ_017121
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021