Plant Circular RNA Database

Detail information of Os02g0813500_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os02g0813500_circ_g.1
					
						ID in PlantcircBase
						osa_circ_017121
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr2: 34838116-34840555  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os02g0813500						
					
						Parent gene annotation
						
							Glutathione reductase, cytosolic (EC 1.8.1.7) (GR) (GRase). (Os0
2t0813500-01);Similar to Glutathione reductase, cytosolic. (Os02
t0813500-02);Similar to Glutathione reductase, cytosolic. (Os02t
0813500-03)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							NA						
					
						Support reads
						1
					
						Tissues
						shoot
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os02t0813500-02:4
Os02t0813500-01:7

General Information
CircRNA Name	Os02g0813500_circ_g.1
ID in PlantcircBase	osa_circ_017121
Alias	NA
Organism	Oryza sativa
Position	chr2: 34838116-34840555 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ue-circRNA
Identification method	CIRCexplorer
Parent gene	Os02g0813500
Parent gene annotation	Glutathione reductase, cytosolic (EC 1.8.1.7) (GR) (GRase). (Os0 2t0813500-01);Similar to Glutathione reductase, cytosolic. (Os02 t0813500-02);Similar to Glutathione reductase, cytosolic. (Os02t 0813500-03)
Parent gene strand	+
Alternative splicing	NA
Support reads	1
Tissues	shoot
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os02t0813500-02:4 Os02t0813500-01:7

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GGTGGCTATATTGCAGATATATTGCTGTTGAATTTGCTTCTATATGGAAAGGGATGGGTGCGCA
CGTAGACTTGTTTTATCGAAAAGAGCTTCCTCTAAGggtttttcgtgtggtgttgaggatccat
ggctaggaagatgctcaaggacgaggaggtggaggtggccgtcaccgacggcgggagctacgac
tacgacct

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 736
Transcript exons: 34838116-34838282,34838385-34838449,34838603-34838672,34
839006-34839077,34839175-34839378,34840300-34840373,3484
0472-34840555
GGTTTTTCGTGTGGTGTTGAGGATCCATGGCTAGGAAGATGCTCAAGGACGAGGAGGTGGAGGT
GGCCGTCACCGACGGCGGGAGCTACGACTACGACCTGTTCGTGATCGGCGCCGGGAGCGGCGGC
GTCCGGGGCTCTCGCACCTCCGCGTCCTTCGGGGCTAAGGTTGCGATTTGCGAGCTCCCGTTCC
ATCCCATCAGCTCGGATTGGCAAGGAGGGCATGGTGGGACGTGTGTGATACGTGGTTGTGTGCC
TAAAAAGATACTGGTGTATGGTTCATCTTTCCGCGGAGAATTTGAGGATGCAAAGAATTTTGGG
TGGGAAATCAATGGGGACATTAACTTCAACTGGAAAAGGCTGCTGGAAAATAAGACTCAAGAAA
TTGTTAGACTAAATGGAGTATACCAGAGGATTCTTGGCAATTCTGGTGTGACAATGATTGAAGG
GGCAGGCAGTTTGGTTGATGCTCATACAGTTGAAGTCACAAAGCCAGATGGTTCAAAGCAAAGA
TATACAGCAAAGCACATATTGATAGCAACTGGTAGCCGAGCTCAACGTGTCAACATTCCTGGGA
AGGAGTTAGCTATTACTTCAGATGAGGCCTTAAGTTTGGAGGAGCTACCAAAACGTGCTGTAAT
CCTTGGTGGCGGATATATTGCTGTTGAATTTGCTTCTATATGGAAAGGGATGGGTGCGCACGTA
GACTTGTTTTATCGAAAAGAGCTTCCTCTAAG
						
					

						Genomic sequence
						
							GGTTTTTCGTGTGGTGTTGAGGATCCATGGCTAGGAAGATGCTCAAGGACGAGGAGGTGGAGGT
GGCCGTCACCGACGGCGGGAGCTACGACTACGACCTGTTCGTGATCGGCGCCGGGAGCGGCGGC
GTCCGGGGCTCTCGCACCTCCGCGTCCTTCGGGGCTAAGGTTTGACTTTTCTCCTCTCCCCCGC
TCCCCATTTTTGCGAGGAAACGTGTTGGATTTTTATTTTTTTTCGTGTGATTTGATTCGGTGTG
TGGCGCGGTTCAGGTTGCGATTTGCGAGCTCCCGTTCCATCCCATCAGCTCGGATTGGCAAGGA
GGGCATGGTGGGACGTAAGCATCTGCCGATTACTTGTCTGCGTTTACATTTCTGTCGTTGAATG
CTTGATTATGATTTAAACCAACTCTCCTCATCCCCTGGGTGAGAATGTGAGATGTTGCTGCATC
CTAAAACCCGCATGCTCATTATTGTACATGTTGTGCTAGGTGTGTGATACGTGGTTGTGTGCCT
AAAAAGATACTGGTGTATGGTTCATCTTTCCGCGGAGAATTTGAGGTAACTGATCTTACTAACT
TATGGAGCCAACTATTACTTGTTTGAAAAACAAGTTGGAAGCATTGTGTTTAGGTTCAATGTGC
TGTGGCTTGCTGAATTATGTTCCTTTACTCAATTTTTGCAAAATTTGCTAAGCCTTACAGCCTC
CATCCTTGATCAACAGTTCATCATTCTGCGTACTGACTTGAAATCCAATAACCTATCCATTTGA
GAGCTTGTTATCATCTTTTTATACAAACTATTTCATTTAGCTTGCTTGCATCTTTGTGAGTACA
TGTACTGAAGTGTCATTCTGGGGTGCTTATTGGAATTGCTACTGTTGTATGATTGCAGGATGCA
AAGAATTTTGGGTGGGAAATCAATGGGGACATTAACTTCAACTGGAAAAGGCTGCTGGAAAATA
AGGTCAGAGCCGCAACCTTGGTTGGGAGAACGTTCCTGCATTATTATTTGCTCGTTATAAATGC
TTACAACCCAATATTGTAAAAACCGTTCTCTGCAGACTCAAGAAATTGTTAGACTAAATGGAGT
ATACCAGAGGATTCTTGGCAATTCTGGTGTGACAATGATTGAAGGGGCAGGCAGTTTGGTTGAT
GCTCATACAGTTGAAGTCACAAAGCCAGATGGTTCAAAGCAAAGATATACAGCAAAGCACATAT
TGATAGCAACTGGTAGCCGAGCTCAACGTGTCAACATTCCTGGGAAGGTAACAAAATTCTCTGC
CAGCCTTTGCAAACTTGTTTCTTATGTCTGGCAAGTAGTTAATAGCATTGTTACTTGTTTGACA
ACTTCTTTATATTCCCCAACTTTTGTGCCTGAAACCTTTGGATTGACCTCGTGATGCTGATTTC
CATGCCATCTTCTGTATTTGTTGTGATACTGTTGCACATCAATAATTATTTGTGATAGCCAGTT
TGATATGGCTGAACTTTTAGGGTTAATCCCCTTTAGATATTTCTTATTACTTGACCCAAAATAC
AATACTCCCTCTATTCCATAATATAAGGCACAACTACTTTTTAAAGCTGTTCCATAATATAAGG
CATACATGCATGCATGCCATTAACTAACACATATTCTCCACTAAAATATTATTATTTAAATTCT
CCACTATCAAGATCTCTAATTTTATTGGGTGCATGTATTACATTTATTAGATTAATCTAAACTA
TGAGGTGATTGAAGGTGGTTGTGCCTTATATTTTGGAATGGAGGGAGTACTAGGCTACCTTTAT
ATACTGAGGTGCCTCTAGATAAGGGAAACGGATACAAACTATTAACCTGATACTACTAGGACTC
TTATAACAAAACTATGAAACTCTGATAAGGAGCTTATTAGGACTTTCCAACTGCTGAAGCACTT
GCCAAATCTGACTTATCTCTATTACGCCGCCGCTGATATACTATACCATAACGTCCAGCCATGA
CACAGTTGGTGTGGATTTGACATTACAAGACTTCCTTTGAGCCAGTTCAAGAGGGACAAAGCAT
TATCTTTAATCCAACAAATTATACTTAGCCATATATATGTGCTGGTTACATCACTGATTTTCTT
TTCCCTTTAGTTTTTTTTTAAATGTCCTTTGGTGTATTATTTTGGCTGACACTGATAAGAACCC
GCTTGCAGGAGTTAGCTATTACTTCAGATGAGGCCTTAAGTTTGGAGGAGCTACCAAAACGTGC
TGTAATCCTTGGTGGCGGGTATGTCTACACTCTAGGGTGCATTTATGTACTATATATTGTTATG
TCATTCCAACTATCTCAGACTTGCATTTGTTCATGTGGTGGCTATATTGCAGATATATTGCTGT
TGAATTTGCTTCTATATGGAAAGGGATGGGTGCGCACGTAGACTTGTTTTATCGAAAAGAGCTT
CCTCTAAG
						
					

			
		

Sequences
Splice junction sequence	GGTGGCTATATTGCAGATATATTGCTGTTGAATTTGCTTCTATATGGAAAGGGATGGGTGCGCA CGTAGACTTGTTTTATCGAAAAGAGCTTCCTCTAAGggtttttcgtgtggtgttgaggatccat ggctaggaagatgctcaaggacgaggaggtggaggtggccgtcaccgacggcgggagctacgac tacgacct
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 736 Transcript exons: 34838116-34838282,34838385-34838449,34838603-34838672,34 839006-34839077,34839175-34839378,34840300-34840373,3484 0472-34840555 GGTTTTTCGTGTGGTGTTGAGGATCCATGGCTAGGAAGATGCTCAAGGACGAGGAGGTGGAGGT GGCCGTCACCGACGGCGGGAGCTACGACTACGACCTGTTCGTGATCGGCGCCGGGAGCGGCGGC GTCCGGGGCTCTCGCACCTCCGCGTCCTTCGGGGCTAAGGTTGCGATTTGCGAGCTCCCGTTCC ATCCCATCAGCTCGGATTGGCAAGGAGGGCATGGTGGGACGTGTGTGATACGTGGTTGTGTGCC TAAAAAGATACTGGTGTATGGTTCATCTTTCCGCGGAGAATTTGAGGATGCAAAGAATTTTGGG TGGGAAATCAATGGGGACATTAACTTCAACTGGAAAAGGCTGCTGGAAAATAAGACTCAAGAAA TTGTTAGACTAAATGGAGTATACCAGAGGATTCTTGGCAATTCTGGTGTGACAATGATTGAAGG GGCAGGCAGTTTGGTTGATGCTCATACAGTTGAAGTCACAAAGCCAGATGGTTCAAAGCAAAGA TATACAGCAAAGCACATATTGATAGCAACTGGTAGCCGAGCTCAACGTGTCAACATTCCTGGGA AGGAGTTAGCTATTACTTCAGATGAGGCCTTAAGTTTGGAGGAGCTACCAAAACGTGCTGTAAT CCTTGGTGGCGGATATATTGCTGTTGAATTTGCTTCTATATGGAAAGGGATGGGTGCGCACGTA GACTTGTTTTATCGAAAAGAGCTTCCTCTAAG
Genomic sequence	GGTTTTTCGTGTGGTGTTGAGGATCCATGGCTAGGAAGATGCTCAAGGACGAGGAGGTGGAGGT GGCCGTCACCGACGGCGGGAGCTACGACTACGACCTGTTCGTGATCGGCGCCGGGAGCGGCGGC GTCCGGGGCTCTCGCACCTCCGCGTCCTTCGGGGCTAAGGTTTGACTTTTCTCCTCTCCCCCGC TCCCCATTTTTGCGAGGAAACGTGTTGGATTTTTATTTTTTTTCGTGTGATTTGATTCGGTGTG TGGCGCGGTTCAGGTTGCGATTTGCGAGCTCCCGTTCCATCCCATCAGCTCGGATTGGCAAGGA GGGCATGGTGGGACGTAAGCATCTGCCGATTACTTGTCTGCGTTTACATTTCTGTCGTTGAATG CTTGATTATGATTTAAACCAACTCTCCTCATCCCCTGGGTGAGAATGTGAGATGTTGCTGCATC CTAAAACCCGCATGCTCATTATTGTACATGTTGTGCTAGGTGTGTGATACGTGGTTGTGTGCCT AAAAAGATACTGGTGTATGGTTCATCTTTCCGCGGAGAATTTGAGGTAACTGATCTTACTAACT TATGGAGCCAACTATTACTTGTTTGAAAAACAAGTTGGAAGCATTGTGTTTAGGTTCAATGTGC TGTGGCTTGCTGAATTATGTTCCTTTACTCAATTTTTGCAAAATTTGCTAAGCCTTACAGCCTC CATCCTTGATCAACAGTTCATCATTCTGCGTACTGACTTGAAATCCAATAACCTATCCATTTGA GAGCTTGTTATCATCTTTTTATACAAACTATTTCATTTAGCTTGCTTGCATCTTTGTGAGTACA TGTACTGAAGTGTCATTCTGGGGTGCTTATTGGAATTGCTACTGTTGTATGATTGCAGGATGCA AAGAATTTTGGGTGGGAAATCAATGGGGACATTAACTTCAACTGGAAAAGGCTGCTGGAAAATA AGGTCAGAGCCGCAACCTTGGTTGGGAGAACGTTCCTGCATTATTATTTGCTCGTTATAAATGC TTACAACCCAATATTGTAAAAACCGTTCTCTGCAGACTCAAGAAATTGTTAGACTAAATGGAGT ATACCAGAGGATTCTTGGCAATTCTGGTGTGACAATGATTGAAGGGGCAGGCAGTTTGGTTGAT GCTCATACAGTTGAAGTCACAAAGCCAGATGGTTCAAAGCAAAGATATACAGCAAAGCACATAT TGATAGCAACTGGTAGCCGAGCTCAACGTGTCAACATTCCTGGGAAGGTAACAAAATTCTCTGC CAGCCTTTGCAAACTTGTTTCTTATGTCTGGCAAGTAGTTAATAGCATTGTTACTTGTTTGACA ACTTCTTTATATTCCCCAACTTTTGTGCCTGAAACCTTTGGATTGACCTCGTGATGCTGATTTC CATGCCATCTTCTGTATTTGTTGTGATACTGTTGCACATCAATAATTATTTGTGATAGCCAGTT TGATATGGCTGAACTTTTAGGGTTAATCCCCTTTAGATATTTCTTATTACTTGACCCAAAATAC AATACTCCCTCTATTCCATAATATAAGGCACAACTACTTTTTAAAGCTGTTCCATAATATAAGG CATACATGCATGCATGCCATTAACTAACACATATTCTCCACTAAAATATTATTATTTAAATTCT CCACTATCAAGATCTCTAATTTTATTGGGTGCATGTATTACATTTATTAGATTAATCTAAACTA TGAGGTGATTGAAGGTGGTTGTGCCTTATATTTTGGAATGGAGGGAGTACTAGGCTACCTTTAT ATACTGAGGTGCCTCTAGATAAGGGAAACGGATACAAACTATTAACCTGATACTACTAGGACTC TTATAACAAAACTATGAAACTCTGATAAGGAGCTTATTAGGACTTTCCAACTGCTGAAGCACTT GCCAAATCTGACTTATCTCTATTACGCCGCCGCTGATATACTATACCATAACGTCCAGCCATGA CACAGTTGGTGTGGATTTGACATTACAAGACTTCCTTTGAGCCAGTTCAAGAGGGACAAAGCAT TATCTTTAATCCAACAAATTATACTTAGCCATATATATGTGCTGGTTACATCACTGATTTTCTT TTCCCTTTAGTTTTTTTTTAAATGTCCTTTGGTGTATTATTTTGGCTGACACTGATAAGAACCC GCTTGCAGGAGTTAGCTATTACTTCAGATGAGGCCTTAAGTTTGGAGGAGCTACCAAAACGTGC TGTAATCCTTGGTGGCGGGTATGTCTACACTCTAGGGTGCATTTATGTACTATATATTGTTATG TCATTCCAACTATCTCAGACTTGCATTTGTTCATGTGGTGGCTATATTGCAGATATATTGCTGT TGAATTTGCTTCTATATGGAAAGGGATGGGTGCGCACGTAGACTTGTTTTATCGAAAAGAGCTT CCTCTAAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_012455 						
					
						PMCS
						0.325154317

Conservation Information
Conserved circRNAs	osi_circ_012455
PMCS	0.325154317

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							34840500-34838220(+)
34838143-34838146(+)
34838443-34840497(-)
						
						Potential amino acid sequence
						
							MERDGCARRLVLSKRASSKGFSCGVEDPWLGRCSRTRRWRWPSPTAGATTTTCS*(+)
MARKMLKDEEVEVAVTDGGSYDYDLFVIGAGSGGVRGSRTSASFGAKVAICELPFHPISSDWQG
GHGGTCVIRGCVPKKILVYGSSFRGEFEDAKNFGWEINGDINFNWKRLLENKTQEIVRLNGVYQ
RILGNSGVTMIEGAGSLVDAHTVEVTKPDGSKQRYTAKHILIATGSRAQRVNIPGKELAITSDE
ALSLEELPKRAVILGGGYIAVEFASIWKGMGAHVDLFYRKELPLRVFRVVLRIHG*(+)
MPSLPIRADGMERELANRNLSPEGRGGARAPDAAAPGADHEQVVVVAPAVGDGHLHLLVLEHLP
SHGSSTPHEKPLEEALFDKTSLRAHPSLSI*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	34840500-34838220(+) 34838143-34838146(+) 34838443-34840497(-)
Potential amino acid sequence	MERDGCARRLVLSKRASSKGFSCGVEDPWLGRCSRTRRWRWPSPTAGATTTTCS(+) MARKMLKDEEVEVAVTDGGSYDYDLFVIGAGSGGVRGSRTSASFGAKVAICELPFHPISSDWQG GHGGTCVIRGCVPKKILVYGSSFRGEFEDAKNFGWEINGDINFNWKRLLENKTQEIVRLNGVYQ RILGNSGVTMIEGAGSLVDAHTVEVTKPDGSKQRYTAKHILIATGSRAQRVNIPGKELAITSDE ALSLEELPKRAVILGGGYIAVEFASIWKGMGAHVDLFYRKELPLRVFRVVLRIHG(+) MPSLPIRADGMERELANRNLSPEGRGGARAPDAAAPGADHEQVVVVAPAVGDGHLHLLVLEHLP SHGSSTPHEKPLEEALFDKTSLRAHPSLSI*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os02g0813500_circ_g.1

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