Detail information of AT1G31420_circ_g.3


General Information
CircRNA Name AT1G31420_circ_g.3
ID in PlantcircBase ath_circ_005234
Alias At_ciR3721
Organism Arabidpsis thaliana
Position chr1: 11250250-11251518  JBrowse»
Reference genome TAIR10.38
Type   ue-circRNA
Identification method CIRCexplorer, find_circ
Parent gene AT1G31420
Parent gene annotation Leucine-rich repeat protein kinase family protein
Parent gene strand +
Alternative splicing AT1G31420_circ_g.1 AT1G31420_circ_g.2 AT1G31420_circ_g.4 AT1G31420_circ_g.5 AT1G31420_circ_g.6 AT1G31420_circ_g.7 AT1G31420_circ_g.8 AT1G31420_circ_g.9 AT1G31420_circ_g.10 AT1G31420_circ_g.11 AT1G31420_circ_g.12 AT1G31420_circ_g.13 AT1G31420_circ_g.14
Support reads 2/5
Tissues leaf/seedlings
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT1G31420.3:6
AT1G31420.1:6
AT1G31420.2:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTTTTGACTTTTTTATTTTATTTTCAAGGGACATGTCAAGCAACACTCTCAGTGGACCTATCCC
TGCTTCGCTTGGGCAGTTAAAAAAGCTTAGTAACTTgagtctagtttcttacttgaacatagac
atggaatcaactaataactgacaaccaagaggctgttcttttcaaatgattggtagtagttata
ttatgctt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAGTCTAGTTTCTTACTTGAACATAGACATGGAATCAACTAATAACTGACAACCAAGAGGCTGT
TCTTTTCAAATGATTGGTAGTAGTTATATTATGCTTGGACAGTGCCATGATGGGCATCTGTGAG
ATGAAAAGCTGCTGCTCATGGCTTCTTTTGATCTCGTTGCTTTGCTCACTATCTAATGAAAGTC
AAGCGATTAGTCCTGACGGTACGTCGATATGAATCAACTATTACTATTCATAGCGTCCTGGACC
TTTTATTGAGCTTTAATCCTTTATTGCTTGTTTCCATTCTTCAGGCGAGGCGCTTCTGAGCTTC
AGAAATGCAGTTACTAGATCAGATAGTTTCATCCATCAGTGGAGACCGGAAGATCCAGATCCAT
GTAACTGGAACGGAGTGACATGTGATGCAAAAACGAAAAGAGTTATAACCTTGTAAGTTTTCAA
ACTTGTCAAGGTTTACTGGTTTTCTCTTCAGTATTTGTGCTCCCTAATACTCTTGTTTCGCAGG
AATCTTACTTATCACAAAATAATGGGACCTTTACCTCCTGATATTGGAAAGTTGGACCATTTAA
GGCTTTTGTATGTGCTCTCTAGCCTTATTCATTTTTATTGCTTAAGAGAGTACTTCGATTCTGA
TCATCTGTGTGTCATTGCAGAATGCTTCACAACAATGCTTTATATGGAGCAATACCTACAGCAT
TGGGAAATTGCACAGCATTGGAGGAAATGTAAGCGCTTTTCCAGGATTTTATACTGATTCCACA
TGGTTTCTGAGAGACCAATTCCAGTTGCTTATGGTCATCAAAATTGTCCAACTGGTTTTGCAGT
CACTTGCAGAGTAACTACTTCACTGGACCAATCCCAGCTGAAATGGGAGACCTGCCTGGCCTTC
AAAAGCTGTATGTTTTTTTCTCTTCCCTATACGTACTTGCAAGTGCATCCTTCTTTTAGTGTAT
GCAATATCTATTTGTTTTTTGTTTTCATTTACTTCTATCACCATCTAGGATCATGGTAACATAT
GGTTGACTGCATAATGTCTTCTCATGCACATTATATTCAGAACTAGTTATACCTAAACTCTTGG
TGAGCAATTTGAAAAGCATGATAATGTATTGTTTACTTCAGATTCACATATTGATTGTTCTCTT
TTCTCTACTAAAACTGACTTTTGACTTTTTTATTTTATTTTCAAGGGACATGTCAAGCAACACT
CTCAGTGGACCTATCCCTGCTTCGCTTGGGCAGTTAAAAAAGCTTAGTAACTT
Conservation Information
Conserved circRNAs NA
PMCS 0.107445601
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description responsive to heat stress
Other Information
References Ye et al., 2015;Pan et al., 2017