Detail information of AT1G31420_circ_g.11


General Information
CircRNA Name AT1G31420_circ_g.11
ID in PlantcircBase ath_circ_005242
Alias At_ciR4163
Organism Arabidpsis thaliana
Position chr1: 11252348-11253214  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ
Parent gene AT1G31420
Parent gene annotation Leucine-rich repeat protein kinase family protein
Parent gene strand +
Alternative splicing AT1G31420_circ_g.1 AT1G31420_circ_g.2 AT1G31420_circ_g.3 AT1G31420_circ_g.4 AT1G31420_circ_g.5 AT1G31420_circ_g.6 AT1G31420_circ_g.7 AT1G31420_circ_g.8 AT1G31420_circ_g.9 AT1G31420_circ_g.10 AT1G31420_circ_g.12 AT1G31420_circ_g.13 AT1G31420_circ_g.14
Support reads 4
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT1G31420.1:3
AT1G31420.2:3
AT1G31420.3:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGATGTATACAGTTTTGGGGTTTTGGTTCTTGAAGTCTTGAGTGGGAAAAGACCAACCGATGCT
TCCTTCATCGAGAAAGGCCTTAACGTTGTTGGTTGGgtgcgtctattgtgatgttccacggaga
tttaccttactcttccaaagatatcattaagaagctggaaatgttgaatgaagagcacataatt
ggatgtgg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTGCGTCTATTGTGATGTTCCACGGAGATTTACCTTACTCTTCCAAAGATATCATTAAGAAGCT
GGAAATGTTGAATGAAGAGCACATAATTGGATGTGGAGGCTTTGGAACGGTGTATAAGCTGGCC
ATGGATGATGGCAAAGTCTTTGCATTGAAGAGAATTCTAAAGTTAAACGAAGGGTTTGATCGGT
TTTTTGAGCGGGAGCTTGAGATTCTTGGGAGCATCAAACACCGATACCTCGTGAATCTACGTGG
ATATTGCAATTCACCAACATCAAAGCTACTGTTATATGATTACTTGCCCGGTGGTAGCCTTGAT
GAAGCACTTCATGGTATGATCAATCTGCTCTTTATGGCTCTCTTCCATATTATGAATGATTCAC
TGAGAAGTTTGGTTCTTGAATTAGTAGAGAGAGGCGAGCAATTGGACTGGGATTCACGCGTAAA
TATCATCATAGGAGCTGCGAAAGGGTTATCATATTTGCATCATGATTGTTCTCCTCGGATTATA
CATCGTGATATAAAGTCGAGCAACATTTTGCTTGATGGCAATCTCGAGGCACGGGTATCGGATT
TTGGTCTAGCCAAGTTGTTGGAAGACGAAGAATCTCATATCACAACCATTGTTGCAGGCACATT
TGGGTACCTAGCTCCAGGTACATATGCCTTTTAAAAGTCTTTACTTACATAAAGATTTGATCTT
TCAAATGCTGAGACTTTTCCATTTGACAGAATATATGCAAAGTGGTAGAGCAACTGAGAAAACC
GATGTATACAGTTTTGGGGTTTTGGTTCTTGAAGTCTTGAGTGGGAAAAGACCAACCGATGCTT
CCTTCATCGAGAAAGGCCTTAACGTTGTTGGTTGG
Conservation Information
Conserved circRNAs NA
PMCS 0.274553529
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015