Detail information of Os01g0819900_circ_g.5


General Information
CircRNA Name Os01g0819900_circ_g.5
ID in PlantcircBase osa_circ_004634
Alias NA
Organism Oryza sativa
Position chr1: 34953313-34955787  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os01g0819900
Parent gene annotation Armadillo-like helical domain containing protein. (Os01t0819900-
01);Similar to HEAT repeat-containing protein. (Os01t0819900-02)
Parent gene strand -
Alternative splicing Os01g0819900_circ_g.4 Os01g0819900_circ_g.6 Os01g0819900_circ_g.7 Os01g0819900_circ_g.8 Os01g0819900_circ_g.9 Os01g0819900_circ_g.10 Os01g0819900_circ_g.11 Os01g0819900_circ_g.12 Os01g0819900_circ_g.13 Os01g0819900_circ_g.14
Support reads 1
Tissues shoot, root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os01t0819900-01:9
Os01t0819900-02:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGGAATCAATTGCCCATGGAGGTGATTTCCTAATTGACACCCAATCTGACTTTGTTAGCTCCAT
TGGCTTATATTGTGTTCCAACTAACCATTCAAATTGcccatcattcatgtagtttgcaatattt
ccaagaagaattgtagtgtttgtcctgatcgcaggttcttcatcaacctgaacacagataacaa
tgattttt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 858
Transcript exons: 34953313-34953387,34953492-34953545,34953808-34953897,34
953979-34954095,34954198-34954308,34954390-34954529,3495
4703-34954784,34954965-34955044,34955679-34955787
CCCATCATTCATGTAGTTTGCAATATTTCCAAGAAGAATTGTAGTGTTTGTCCTGATCGCAGGT
TCTTCATCAACCTGGAGCTTAGATAGATACTTCAAGAGAGATCCTGAAATCGTACGCTGAGATA
ATTTGGGTGCCAATACAAGCATAGACTTCAAGGTCAGTTCACGAAGAAAAGCAGAAGTATCAGA
GAACCCAGTGGCAACATGGGGGAAAACTTGCTCATCAACAGTTTGAGCTGTCAATGACTCCCCA
AACTGATCTATGTGCTGCAAAAGGCTAACTCGGATAGCTCGGTCATTAGAGGCAAAAAGCTTCA
CAATTGTAGGCAAAACCTTTGCACTAAATTGGTCAGCTGGAAGCCAGGAACCCATCTTCAACAA
TACAACCAAGGCTGGTGCAGCAGCTGAACCAAACTCAAGAGCAGATGCCAGCACAGGGAGCAAC
TTTTTCAGGACTATCTCACGAGGAAGCTGCTCAGCTATGTTCGGTAGTTTACGGAAAAAGCTAT
CTTTCTCAACACTGTCCTTTAAGTTAAGAACTTCCATGAACTGTATGGTCTCTACTAACTTGTT
CTGGAAAAACTCACTGTTGTCAATAAGTTTAGAAGGGTTCATTCTACGAGAAGGGGCAGAACTC
AAGAGCCTCTGGTAATCTGGAAGTAAAGACTTTGGGATTGAAGCAGTGTTCCGAAGGTCCTCTG
TCCTGGTTAGCTTTGCACCAGAAAAGAGCTCATAAATTAAACACCCCAGTCCCCAGGAATCAAT
TGCCCATGGAGGTGATTTCCTAATTGACACCCAATCTGACTTTGTTAGCTCCATTGGCTTATAT
TGTGTTCCAACTAACCATTCAAATTG

Genomic sequence CCCATCATTCATGTAGTTTGCAATATTTCCAAGAAGAATTGTAGTGTTTGTCCTGATCGCAGGT
TCTTCATCAACCTGAACACAGATAACAATGATTTTTTTTACTTTTAACTAAATTGTATACCTTC
ACATGTCAAACTGAGTCCATCTGAGGCATTTCAGTTAGAACAGAACATCACCTGGAGCTTAGAT
AGATACTTCAAGAGAGATCCTGAAATCGTACGCTGAGATAACTACAGTAACAGATTGGTGAATT
AGTCATAAAGAAGCAATAATCTTCCTGAAAAAATAATACCACAGAAATTTGCAATCCCAGGATT
TTTTTTTCTTTAAAAGCCCGCTGTGCACACAACCAGAGAGAGCGATAGATAAATTTAGAACACT
TTTTAAAAAGAAAACTGTTAACACAGCACAATCAGTAAAAATGAAAGACATCCACAAGGATTTT
GTTCGGGGTGCAAATGTTGATCATGCAGAGGGTTGGGAGGGTCTTACTTTGGGTGCCAATACAA
GCATAGACTTCAAGGTCAGTTCACGAAGAAAAGCAGAAGTATCAGAGAACCCAGTGGCAACATG
GGGGAAAACCTGCATTAGAGATATTTATCCTGTCAAGCATCAACATTCCAGAAACACATGCAGA
TGTCCATACAGGAAATGATAGCATACTTGCTCATCAACAGTTTGAGCTGTCAATGACTCCCCAA
ACTGATCTATGTGCTGCAAAAGGCTAACTCGGATAGCTCGGTCATTAGAGGCAAAAAGCTTCAC
AATTGTAGGCAAAACCTGAAAATGCCAGTGGTTTTAACTTGTGTTATAACATCGTAACACACAT
TTACTGGAATGACTAACGAATATTGGGTGAAAACGAAAGAAATGAAGTCAAACCTTTGCACTAA
ATTGGTCAGCTGGAAGCCAGGAACCCATCTTCAACAATACAACCAAGGCTGGTGCAGCAGCTGA
ACCAAACTCAAGAGCAGATGCCAGCACAGGGAGCAACTATTGACAGAGTAACCAACCGATAAGC
ATATAAACAAGAACCGGGGGAATAATGGGTTCTATTCATGACTTGAACATTACCTTTTTCAGGA
CTATCTCACGAGGAAGCTGCTCAGCTATGTTCGGTAGTTTACGGAAAAAGCTATCTTTCTCAAC
ACTGTCCTTTAAGTTAAGAACTTCCATGAACTGTATGGTCTCTACTAACTTGTTCTGGAAAAAC
TCTGAAAATGAAGAACCACAATTGTCACTGCAGCTTATTTAAAGTAATCCAAATAATTGACATA
GAATTACAGCATTAAGAGCAAAAGTAGAAGGTTATGGGCGTCGATGTAATAAGTGTCGAAATAC
AAAAAGTAATTCCTGAAATGATGAGAGAAAAATATGTTGAACTTACCACTGTTGTCAATAAGTT
TAGAAGGGTTCATTCTACGAGAAGGGGCAGAACTCAAGAGCCTCTGGTAATCTGGAAGTAAAGA
CTGCAGCAAAATAGAAGGAAACCAACAACTTTATGATACGCATGAACAATGTATAGATTAGTCA
GCATAATGCTCTACATTACAGACTTCAAACAGTGGAGAAGCAATACAAAAATTACCAACAAAAA
AAATCAATAGCTAAATAGAGACAGATTCAGGACCATGATCGTGCAAACTAACCTTTGGGATTGA
AGCAGTGTTCCGAAGGTCCTCTGTCCTGGTTAGCTTTGCACCAGAAAAGAGCTCATAAATTAAA
CACCCTGCAATGAGTCCAGAGATCAATATTTTTGGAGATGAGTCTAAAAACCATTTTTACTGTT
AAATACTGCTATAAGAAACTTTCAGGTGCTCCTTGAATGTGATTATGTGAAAGAGATTCAGCTT
AGTAACATATGACTATTCTCTGTGTGTTTTGCCTTTAGATTGTCTTACTTTCCCATTTTTTTTC
TTGTTGATTACAAACAATGGATTCTCTAATTCGAAAAATATATCCTCCGCTGGGTGCCATTTAT
TATCAATATTTCATCATTCTGGAAATAATATTAAAGAGAGTCTATATGCAGCAAAGCAAACAAA
AGCAAAATGCAAATAACAAAGGAATTCAGGTAACCATAGTTTATTAATTTGACTCTAGACATGT
CTTTTCTTGGTCGATCTTGACCTGGTCTATAGTGCAAAACTTTATAGTATTTACCATAAAAGAT
TTGAAACTACGATACAGGCCCATAGAGAGATATCCATTTAAAGAAAATAAACAACTTTTGCAAT
TAAAGTACAATAATGCCGAGTGCACATCCGACAAGGAACTGTTGAACAGTTTCCGAATTGTAAA
ATTATGGAAACAGAACAATCAAACAAGAATGTAATGAAGGAAAAGGAGTTAGCTCTGCTTACCC
AGTCCCCAGGAATCAATTGCCCATGGAGGTGATTTCCTAATTGACACCCAATCTGACTTTGTTA
GCTCCATTGGCTTATATTGTGTTCCAACTAACCATTCAAATTG
Conservation Information
Conserved circRNAs NA
PMCS 0.244816997
Functional Information
Coding potential Y
Potential coding position 34955753-34953315(-)
Potential amino acid sequence MELTKSDWVSIRKSPPWAIDSWGLGCLIYELFSGAKLTRTEDLRNTASIPKSLLPDYQRLLSSA
PSRRMNPSKLIDNSEFFQNKLVETIQFMEVLNLKDSVEKDSFFRKLPNIAEQLPREIVLKKLLP
VLASALEFGSAAAPALVVLLKMGSWLPADQFSAKVLPTIVKLFASNDRAIRVSLLQHIDQFGES
LTAQTVDEQVFPHVATGFSDTSAFLRELTLKSMLVLAPKLSQRTISGSLLKYLSKLQVDEEPAI
RTNTTILLGNIANYMNDGQFEWLVGTQYKPMELTKSDWVSIRKSPPWAIDSWGLGCLIYELFSG
AKLTRTEDLRNTASIPKSLLPDYQRLLSSAPSRRMNPSKLIDNSEFFQNKLVETIQFMEVLNLK
DSVEKDSFFRKLPNIAEQLPREIVLKKLLPVLASALEFGSAAAPALVVLLKMGSWLPADQFSAK
VLPTIVKLFASNDRAIRVSLLQHIDQFGESLTAQTVDEQVFPHVATGFSDTSAFLRELTLKSML
VLAPKLSQRTISGSLLKYLSKLQVDEEPAIRTNTTILLGNIANYMNDGQFEWLVGTQYKPMELT
KSDWVSIRKSPPWAIDSWGLGCLIYELFSGAKLTRTEDLRNTASIPKSLLPDYQRLLSSAPSRR
MNPSKLIDNSEFFQNKLVETIQFMEVLNLKDSVEKDSFFRKLPNIAEQLPREIVLKKLLPVLAS
ALEFGSAAAPALVVLLKMGSWLPADQFSAKVLPTIVKLFASNDRAIRVSLLQHIDQFGESLTAQ
TVDEQVFPHVATGFSDTSAFLRELTLKSMLVLAPKLSQRTISGSLLKYLSKLQVDEEPAIRTNT
TILLGNIANYMNDGQFEWLVGTQYKPMELTKSDWVSIRKSPPWAIDSWGLGCLIYELFSGAKLT
RTEDLRNTASIPKSLLPDYQRLLSSAPSRRMNPSKLIDNSEFFQNKLVETIQFMEVLNLKDSVE
KDSFFRKLPNIAEQLPREIVLKKLLPVLASALEFGSAAAPALVVLLKMGSWLPADQFSAKVLPT
IVKLFASNDRAIRVSLLQHIDQFGESLTAQTVDEQVFPHVATGFSDTSAFLRELTLKSMLVLAP
KLSQRTISGSLLKYLSKLQVDEEPAIRTNTTILLGNIANYMNDG(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017