Detail information of Os08g0562700_circ_g.10


General Information
CircRNA Name Os08g0562700_circ_g.10
ID in PlantcircBase osa_circ_038119
Alias Os08circ16564
Organism Oryza sativa
Position chr8: 28174904-28177631  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer, SMALT, Segemehl
Parent gene Os08g0562700
Parent gene annotation Similar to peptidase M1 family protein. (Os08t0562700-01);Simila
r to predicted protein. (Os08t0562700-02)
Parent gene strand -
Alternative splicing Os08g0562700_circ_g.1 Os08g0562700_circ_g.2 Os08g0562700_circ_g.3 Os08g0562700_circ_g.4 Os08g0562700_circ_g.5 Os08g0562700_circ_g.6 Os08g0562700_circ_g.7 Os08g0562700_circ_g.8 Os08g0562700_circ_g.9 Os08g0562700_circ_g.11 Os08g0562700_circ_g.12 Os08g0562700_circ_g.13 Os08g0562700_circ_g.14 Os08g0562700_circ_g.15 Os08g0562700_circ_g.16
Support reads 2/1
Tissues leaf/shoot
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os08t0562700-02:12
Os08t0562700-01:12
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTGCAGCAAATCACTAAAAGCCTATTTCATGAGTACCTGATCCCGGAATACAGTCAATCCTTCT
TTCAGAGTGAGCTGGAACCAATCACGACAAGTCACTtgttgaaagaaggtcatctttgagttga
agggcaagctccttcttaataaaggtacggacagcatgaactgcatcaggatctgcaactggca
tcatatcc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1095
Transcript exons: 28174904-28175050,28175129-28175267,28175346-28175494,28
175800-28175983,28176193-28176273,28176346-28176455,2817
6694-28176750,28176831-28176842,28177137-28177159,281772
52-28177299,28177408-28177488,28177568-28177631
TGTTGAAAGAAGGTCATCTTTGAGTTGAAGGGCAAGCTCCTTCTTAATAAAGGTACGGACAGCA
TGAACTGCATCAGGATCTGCAACTGGCATCATATCCATAATCTCCCCTTGACCCGGCAAAGTTA
TCGCTTTCGCAATGAATTCTTTATCCAAGCTTGTGTTCCGCAGGATTGATCTAAGTCCATCAAC
AAATTTAGGGTTCAGGGCCAGTGTTTTCTGTTGCTGGAAGTCAGCTACAAGACTGAGCATCAGT
TTACGTGACAGCACCTGACCAGCTTCCCACCTGTTAAATTCATCCGAATCATTGGCAAGTAGGA
AAAACAAGTCACTCTCAGTCAGATCAGAATCAAGACGAACAGGAGCACTGTATCCCCTCAACAA
GGAAGGCACTGGTTTCTCAGGTATGTTGTTAAATATGAATTCTTCCTCCTTCTTATTAAATTGA
AGAACAGTAGTGAAGACTGGCTGGCCATCACTAGTGAGTGATTGGAGCATCCCATCACTGTAAA
TGGAAGTTAGGGGCATATCCTTTCCGGTAGAATCAACAAGTCCGACAGCAATAGGAATGAACAT
CGGCTCTTTAACTGGTTGGCCAGGGGTAGGTGGCACTTCTTGACTAAATTTCAGAGAAAATGTC
TGAGAACTTGCATCGTATGAAGAGCTCACTTTAACAGTTGGAGTACCTGCCTGAGAGTACCATT
GTAAAAAGTTTGGCAGCTGGGTGTTATTTGCATCACACATTGCAGCATAAAAGTCTTCACAAGT
CACAGCTTGCCCGTCGTGCCTTTGGAAGTAAAGATCCATGCCCTTTCGAAACCCTGAAGCTCCA
AACATGGTCTTGTACATTCTAACAACTTCAGCACCCTTTTCATAAACTCACCGGTATAAAAATT
GTCCATCTTGATATACGAATGCGGACGAATAGGATGCGCCATAGGGCCAGCATCCTGTGGAAAT
TGATAGGTCCTGAGTTTAGAAACATCGGCTATACGTTTTACTGTGCGACAACCAAGATCTGATG
AGAATTCCTGATCCCGGAATACAGTCAATCCTTCTTTCAGAGTGAGCTGGAACCAATCACGACA
AGTCACT

Genomic sequence TGTTGAAAGAAGGTCATCTTTGAGTTGAAGGGCAAGCTCCTTCTTAATAAAGGTACGGACAGCA
TGAACTGCATCAGGATCTGCAACTGGCATCATATCCATAATCTCCCCTTGACCCGGCAAAGTTA
TCGCTTTCGCAATGAATTCCTAAAAGAACACATGTTAGACATTTTACAGTTGAATTCCGTATGA
TAAAATCATAGTAGCATCAGAAAAAAAAAATACTTTATCCAAGCTTGTGTTCCGCAGGATTGAT
CTAAGTCCATCAACAAATTTAGGGTTCAGGGCCAGTGTTTTCTGTTGCTGGAAGTCAGCTACAA
GACTGAGCATCAGTTTACGTGACAGCACCTGACCAGCTTCCCACCTAAGGAATGCAAGAATTCT
CAGATTAAAAATCTCCAATAAAAGAGAAGATGACTTAAAACAGGAAACAGAGAGCAACCTGTTA
AATTCATCCGAATCATTGGCAAGTAGGAAAAACAAGTCACTCTCAGTCAGATCAGAATCAAGAC
GAACAGGAGCACTGTATCCCCTCAACAAGGAAGGCACTGGTTTCTCAGGTATGTTGTTAAATAT
GAATTCTTCCTCCTTCTGAAAGATGAAAAAAATGTCTCATTCAGCCATTTTGAAGATCAGACAA
GAACATGTAATGTCTGAACGCGAATATAAAAATTGCAGGTTGATGTCTTTACACATCTCAACCA
CGTGATCCTGACTAAGGCACAATTCTTAGTACTTTCTATAAAAATCAAAGTATAGCAAGAGTTC
AAAATGATAATCTCACAAATGACTTAATTGCATGGCATGCAAGGTTCATAATCCAAAGAAATCA
ACTTGTGGCCCTGAAGTTGCCATTGAAGAGGAATTTTTGACTGGAAAATAATCAGTTCTTATAC
CTTATTAAATTGAAGAACAGTAGTGAAGACTGGCTGGCCATCACTAGTGAGTGATTGGAGCATC
CCATCACTGTAAATGGAAGTTAGGGGCATATCCTTTCCGGTAGAATCAACAAGTCCGACAGCAA
TAGGAATGAACATCGGCTCTTTAACTGGTTGGCCAGGGGTAGGTGGCACTTCTTGACTAAGATA
TTTAAAAGGACGGAAGGAATTAGTTGAAAATATTCTAATTTCACAAATTATCTATAGAAGGCAG
AAAAGGAAGAAGCAAAATATCTATAATCCGTGGATTAAAAACATGAACGGAAAATCAAGCAATA
CAGAAAAAGAATCATAAACTGGGTTAACTCTTTAAGTGAAAGTAACTAAAAACTTGGTAGTGTA
GAAGCTCACCTAAATTTCAGAGAAAATGTCTGAGAACTTGCATCGTATGAAGAGCTCACTTTAA
CAGTTGGAGTACCTGCCTGAGAGTACCTATTGCATGGTTGTTTTAAGATCAGATTGTGCTTGCA
ACATGTGCATCGTTGAAAGATAGATGTCTAGTACCATTGTAAAAAGTTTGGCAGCTGGGTGTTA
TTTGCATCACACATTGCAGCATAAAAGTCTTCACAAGTCACAGCTTGCCCGTCGTGCCTTTGGA
AGTAAAGATCCATGCCCTGTGCAGGAGATACAAACTGTTAACTAAACAGAACGAGCAGATAACA
CACGTTTGATAACTGAAGAAAAGAGACAGATCTCATGAAGATTCTCATTCTTTGGTGCTTCCTT
TTTTTTTTGCCAAAAGATAACAAAGCAATCGGTTTTCTCATTTCTTTTATTTTCATATATTTAA
GCCCACAGCACCACCATGGGAGAAAAGAAATCATCATCATGCTTTCTGCATTTAACTTTTACCT
TTCGAAACCCTGAAGCTCCAAACATGGTCTTGTACATTCTAACAACTTCAGCACCCTACAAGTA
CATATCCACAAATTACATCCCACTGGGGTTAGGGGTCAAAAGTGAATAAGAAAACATTGGATCA
AACGAACCTTTTCATAAACCTGTGATGAAATCCCATAATCATTGGATGAAAAAGTAGAAAGCAG
CAAAAGAAAATGTCAGAACGTTCCAGGATTTCTTTAGACAAAAGAATTCCCATACAACTTTATT
GAAAGCTAATTGAACAGAACAGAAAACATACCGTTACTGCCAGGTTTTTCACGTTCAAATCACC
ACACAAGATTCAACAAATAATAAGGTTGGAGGTTCACCAGGGCATAAAATGATTGAAAATAATT
AGCTAATGATGTAGTACTTCTCATTAGATGCACATCATACTTCACAGACAGAGCAACTCACCGG
TATAAAAATTGTCCATCTGCCAGTAAAATTAGAAGAATTAATATCAGATCTGTATGGTGGCTAA
AAATCACAAAGTAGTTACAATAACTGACAGTTAAGTATTGTCACCTTGATATACGAATGCGGAC
GAATAGGATGCGCCATAGGGCCAGCATCCTGGATATCAGGGAGGAAAGTAATGATTTAAAACAA
GAAAACAAATGTAACTGCCATCAAACCAATTAGAATCCAGTACTAGTGAAGGGAAATTTAAAGA
AACACAACCTGTGGAAATTGATAGGTCCTGAGTTTAGAAACATCGGCTATACGTTTTACTGTGC
GACAACCAAGATCTGATGAGAATTCCTGCAGATTCAATTTATTAACAGAGCACGATAAAACCCA
AACATTGCAGCAAATCACTAAAAGCCTATTTCATGAGTACCTGATCCCGGAATACAGTCAATCC
TTCTTTCAGAGTGAGCTGGAACCAATCACGACAAGTCACT
Conservation Information
Conserved circRNAs osi_circ_007920* osi_circ_018184
PMCS 0.341493353
Functional Information
Coding potential Y
Potential coding position 28176734-28177619(-)
28174979-28176415(-)
Potential amino acid sequence MYKTMFGASGFRKGMDLYFQRHDGQAVTCEDFYAAMCDANNTQLPNFLQWYSQAGTPTVKVSSS
YDASSQTFSLKFSQEVPPTPGQPVKEPMFIPIAVGLVDSTGKDMPLTSIYSDGMLQSLTSDGQP
VFTTVLQFNKKEEEFIFNNIPEKPVPSLLRGYSAPVRLDSDLTESDLFFLLANDSDEFNRWEAG
QVLSRKLMLSLVADFQQQKTLALNPKFVDGLRSILRNTSLDKEFIAKAITLPGQGEIMDMMPVA
DPDAVHAVRTFIKKELALQLKDDLLSTSDLS*(-)
MQFMLSVPLLRRSLPFNSKMTFFQQVTCRDWFQLTLKEGLTVFRDQEFSSDLGCRTVKRIADVS
KLRTYQFPQDAGPMAHPIRPHSYIKMDNFYTGEFMKRVLKLLECTRPCLELQGFERAWIFTSKG
TTGKL*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015;Chu et al., 2017