Detail information of Zm00001d017522_circ_g.7


General Information
CircRNA Name Zm00001d017522_circ_g.7
ID in PlantcircBase zma_circ_002116
Alias circ2176
Organism Zea mays
Position chr5: 198597781-198602021  JBrowse»
Reference genome AGPv4.38
Type   ui-circRNA
Identification method CIRCexplor2
Parent gene Zm00001d017522
Parent gene annotation Tripeptidyl-peptidase 2
Parent gene strand +
Alternative splicing Zm00001d017522_circ_g.3 Zm00001d017522_circ_g.4 Zm00001d017522_circ_g.5 Zm00001d017522_circ_g.6 Zm00001d017522_circ_g.8 Zm00001d017522_circ_g.9
Support reads 2
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered Zm00001d017522_T005:4
Zm00001d017522_T014:4
Zm00001d017522_T010:4
Zm00001d017522_T007:4
Zm00001d017522_T016:4
Zm00001d017522_T023:4
Zm00001d017522_T021:3
Zm00001d017522_T019:4
Zm00001d017522_T008:2
Zm00001d017522_T015:4
Zm00001d017522_T017:4
Zm00001d017522_T002:3
Zm00001d017522_T004:4
Zm00001d017522_T011:4
Zm00001d017522_T020:3
Zm00001d017522_T013:4
Zm00001d017522_T006:4
Zm00001d017522_T001:4
Zm00001d017522_T003:4
Zm00001d017522_T018:4
Zm00001d017522_T012:4
Zm00001d017522_T009:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAAAGAATTGATTAAATGGGTTGATGTCAAATCTGCAAAATATGGCACTTCGACTGTTTTGCGT
GAAAAACGCTGTGGAAGACCTGGTACAGCATTGAAGgtcagaatatccgaagtacacacctttg
ctttctaagattttgcaatgtgtcctccagaaaggaactgatggtgataagattagccatgaaa
aagaggta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTCAGAATATCCGAAGTACACACCTTTGCTTTCTAAGATTTTGCAATGTGTCCTCCAGAAAGGA
ACTGATGGTGATAAGATTAGCCATGAAAAAGAGGTAAATGTTGACTAATGTTCCATTTCATTTT
TGGTGTCCTGCATCTTATGCCCAACTGCTGAATTTAGCAACGCTTAAATGAATTTACAAATTTG
ATGTCCTCGTACGAAGCTGTCCTTGTTTAACTATCTACCATGCCTATGGTTGATGTGTTGGAAC
TGTTTGGTTAATGCCTGAACAACTCATTACTAGGGGCAACGTGCATATTGCCAAAAAATGGCCC
TTTATTTGGTGCAATAGAATTGTCTTCTATTCCTGCATGGACCATTTCTGCGTCCTTAAGTTGG
ATTTTGTGGCAAACCTGATTAATGTTGGAATTGGGAACTTTAACTCATGTCATCACTGTTTAAT
GAAACAAAATCTTGTTGCATTTTTCTCTTAGGAAACAATCACACAGATAAAAGTTTGACTATAG
CTTTGACATGAAATGGATTTGAAAGAGTGGAATATAGACAAATAATTGTCCTTCAAAGTGCATG
AACATCAGCAGTCGACATGCCTGAATCATGAACTATGCTGTTTTGTTTCCCTTTTATGTTTATA
TATTACTATTACCATTATTAATTCCTATATATTGCTGGCAACTCATGTTGGGTCTCATCTATAC
ACTACCCAAACTTGCTTGTTGCTACCAGGCTTAGTTGCTGACTTCTTGTTACTTATTCTGTTCC
ATATTATAGTTCACTTTGTTTTTGTCCTTAGTCAAACTTCTCTAACTTAGACCAAGTTTCTAGG
AAAAAAACATTAACATTTACAGGTTCAAATTAATGAACTATCAAACATATTTCATTGATAATTC
AATGAAACTAATTTGCTGCCGTTGATGTTGGTGCCTTTTCCTATAAAAGTGGTAAATATTAAAG
AAATTTAACAAAATCGAAGTGTAATATAATTTGGAACAGAGAGAGCAGTATTTATTTCACACGA
AACATAACCATATAAATCAACATCAACATAGTCTTTTAGTCCCAAGCAAGTTGGGGTAGGCTAG
AGTTGAAACCCAACAAGTCTTTTAGTCCCAAGCAAGTTCGGGTAGGCTAGAGTTGAAACCCAAC
AAGATGTCACCAAAAGGGGAAAGAGAGAGAAAGGGGAGGGAAAAGCTTTTGAGAGCACTAAAAG
AAAAAAAAAGCCTAATCACGGTTCGGGCACATGGATAGCTTCTTTCCAAGCACTTCTATCGAAA
CACAACTCCATTGGGATATTCCATTCCTTCAAGTCTCTTTTGATTGCCTCCTACCATGTCAAGT
TTGGTCGATCTCTACCTCCCTTCACATTATTGTCCCGTCTTATGATGCCTCTATGCACCGGTGC
CTCTAGGGTCTCCGTTGAACATGCCCAAACCATCTCAACCGGTGTTGAATAAGCTTTTCTTCAA
TTGGCGCTACTCCTAGACGATCACGTATGTCATCGTTTCTCACTCGGTCCAATCTTGTGTGCCC
ACATATCCAACGCAACATACGCATCTCTGCGACACTTAGTTGTTGAATATATCGTCTCTTAGTA
GGTCAACACTCAGCCCCATATAACATAGCGGGCCTAATCGTTGTCCTGTAGAACTTGCCTTTCA
ACTTCTGTTGCACTCTCTTGTCGCATAGGACTCCCGATGCTTGACGTCATTTCATCCACCCAGC
TTTGATTCTATGGCTAACATCTTCATCAATATCACCATGTCTCTGTAGCATCGATCCCAAATAA
CGGAAGGTGTCCTTCTTTGGTACTACTTGGCCTCCCAAACTTACATCTCCATCCTCACTAATTG
TAGTACCAAAGTCACATCTCATATACTCTGTTTTGGTCCTGCTAATTCTAAATCCTTTTGACTC
TAGGGACTGACGTCATAACTCTAGCTTTCTATTTACTCCTTCCCGGCTTTCATCTACTAGAACT
ACATTGTCAGCGAAAAGCATACACCAAGGGATATCTCCTTGTATATCCCTCGTGACCTCATCTA
TCACTAAGGCAAATAGATAGAGCTCAAAGCTGAACCTTGATGTAGTCCTATGTTAATCGGGAAA
ACATTTGTATCACCATCAGTTGTTCGGACACTAGTCACAACCTTGTCATACATGTCCTTGATGA
GCGTATACCGCTATAGAATTTTCATAGAATTTTCCATAGAATTTTCATAGCCAGTTTGCTTATC
ATACTTACTTGAAAAAGGATCCAGTCATATCATCAAAGCATTTTCAAATGCTGTTTTGGTGTAT
ACCGCTATATACTACTACTCTTTCAAAATCAGTTTGGCTGTTACTACTTCAGTGCTGGAACAAT
TGAGACTTTTGAATGTAAAACTATACTTCAACCATATTCTTCATCAAGCATAATGTACAGTGCT
CATTCTCTCCCCTTAGAAGACGTTAGACAGAAGGGTGAGCTGCCACCTGGTGCTCCTCTGCTGG
GCCTCTGCGCCCCTACTAGGCTCTTGTGCCCCTTATGGCTAGGATAGGAAGATTGATCTCCAAT
AGGCAAGAAGCCAAGAACCACCGTTGATCAGTTCTAATCCCTCCGTCCACAAAAGGATGCAATT
TTCACTTTTCGAGGAGTTAACGATTCAAAGTTTGACCAAAGTTATATAAAAGGGTACATAATAT
TTTTTTAGTAAACCTAGTTCTGAGACATAAATGGTAATACTGTTCACTATAAACTTGGTCAAAC
CGTCAAAGTTAGTGTGACTTCCACAAATCCCATAGTTGCATCCTTTTGTGGAAGGAGTATTTCT
ACAATTATATCTTCCATAATAAACTGATTATTCCGTGTGCCTATTCCAACTCAGAAGAATTTTC
CTGTCACATAGGTGGGGGGTTAATCTGTCAGATAGAATCATGCTATATTTTCGACCTCGTGCAA
AGTTCAAGTGTATTACTTTTATGGCTGCTTTGATAAGTTATCTTTTTTTAAAAAAAAATAGCTT
TCACTTTTCTCTGTTTTTAATGAATTTCACTATTCCCTATCAAGCAAGAGTTCTTTTTTCCACT
TTGTAATTTTGGTGTTCAGGTTATTGCTGCAGCCGATGAGGTTGTGGGCAGTATTGATAAAGAG
GAACTGGCTAAGTATTTATCTCTAAATTCAGATCCTGAAGATGAAGAAGCACAGGTAACAGATT
GTACTTCCTCCTTTTGAAGTGTTTCATTCTGTTCGGGCAAGGCTTTACCAGCAATTACTATATT
AATACATGCTTTTTTGTGAAAAAACATGATGGTATTATATTCGTGTTGAACATGCATATTTATG
AATTATGATTATGGTTTTATATCGCATAAGTGAGTAACTGTTGGTCAAAGCCTTGTCCTAACAA
AATGAATGGTGTCTTGTGATTTCAAATGGAAGTAGTACCTTGTTTTGTTTTTTTCTTTTAGTGA
AAATGTGGTCCTTCCTCGGCTCCTCCATTTCAAATTATAAGATATTTTGGCTTTTCTAAGTACA
TGGCTCTTGCTATGCGCTTAGATATACACTATGTCTAGATACATAGTACAAACAATGTATTTAA
AAAAACTAAAACGTCCTATAATTTGGAATGAAAGGTTTTCTCCTATGACAGAAATTCAAGAAAA
AAATAGAAGAAACGCGAGATCAGTTGGCTGATGCACTATATCAAAAGTGTCTTGCATTGGCTGA
GATTGAATCACTGAAGGTACAACATCTTTGCATTTCTTATTTTCTTAACATTAATTAATGCTTT
TACTGTTTTTATACGTTTTGTTACTCATTTTATCATAACCTAGAACTTAGACCTGCATCTTGTT
CATTGATTTCCTGGATTTCTTTTTCCTGAATTTCTAACTGTTCAAACCTTATATCAACATTGTG
AAGCATAAGAAGATTGTTTTTCTGCTTTTTGCTCAGTTAGTATGTGGATCCTTATGCCATGCAT
TGGTATTCTAATTTCTTGCACGTGCCATACTTCTCCGACTGAACTTACAAAACATGTATTTTAT
GTCTGTCTGTGTATTGCCATGGTGCATGTTTTAGAAATTATTCTTTTGTTTTGTGGCAGTCTGA
TGAGTCAATTGAGGTATCTGCTAAAGATATTTTTGAGGAGAATTACAAAGAATTGATTAAATGG
GTTGATGTCAAATCTGCAAAATATGGCACTTCGACTGTTTTGCGTGAAAAACGCTGTGGAAGAC
CTGGTACAGCATTGAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.008036627
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b