Detail information of Os06g0127000_circ_g.4


General Information
CircRNA Name Os06g0127000_circ_g.4
ID in PlantcircBase osa_circ_029480
Alias Os06circ01817
Organism Oryza sativa
Position chr6: 1426828-1426951  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method SMALT, Segemehl
Parent gene Os06g0127000
Parent gene annotation Peroxisomal biogenesis factor 11 family protein. (Os06t0127000-0
1);Peroxisomal biogenesis factor 11 family protein. (Os06t012700
0-02);Peroxisomal biogenesis factor 11 family protein. (Os06t012
7000-03);Peroxisomal protein, Response to abscisic acid (ABA), h
ydrogen peroxide, and salt (Os06t0127000-04)
Parent gene strand +
Alternative splicing Os06g0127000_circ_g.2 Os06g0127000_circ_g.3 Os06g0127000_circ_g.5
Support reads 2
Tissues leaf
Exon boundary   Yes-No
Splicing signals   GT-AG
Number of exons covered Os06t0127000-01:1
Os06t0127000-04:1
Os06t0127000-03:1
Os06t0127000-02:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAGCCTCGACATAGTTGTTGCTATAGGGCTGCTTCAACTGGCTCCCAAGAAAGTGACTCCGCaa
cgagcaataccagatgaaactgcagaagtgcaacgagaggcgtctcgctctcatcaaatc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AACGAGCAATACCAGATGAAACTGCAGAAGTGCAACGAGAGGCGTCTCGCTCTCATCAAATCGA
GCCTCGACATAGTTGTTGCTATAGGGCTGCTTCAACTGGCTCCCAAGAAAGTGACTCCGC
Conservation Information
Conserved circRNAs NA
PMCS 0.179438575
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015