Detail information of Os06g0127000_circ_g.2


General Information
CircRNA Name Os06g0127000_circ_g.2
ID in PlantcircBase osa_circ_029478
Alias NA
Organism Oryza sativa
Position chr6: 1425826-1426739  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer
Parent gene Os06g0127000
Parent gene annotation Peroxisomal biogenesis factor 11 family protein. (Os06t0127000-0
1);Peroxisomal biogenesis factor 11 family protein. (Os06t012700
0-02);Peroxisomal biogenesis factor 11 family protein. (Os06t012
7000-03);Peroxisomal protein, Response to abscisic acid (ABA), h
ydrogen peroxide, and salt (Os06t0127000-04)
Parent gene strand +
Alternative splicing Os06g0127000_circ_g.3 Os06g0127000_circ_g.4 Os06g0127000_circ_g.5
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os06t0127000-04:5
Os06t0127000-01:5
Os06t0127000-03:5
Os06t0127000-02:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCATCTGACTAGTATTTCATTATAGGTAGCCGAGCTTCAGCGGCTATCCAAGTCGATGAAGAAA
CTAGAGAAGGAGCTTAAACACCAGGAGCTGTTAAAGtcaccagctatacagtatgagttcactg
gagagtgcaagagcagatcttgctctgcttattttatacctaaacaaggctgaagcaagagata
agatctgt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TCACCAGCTATACAGTATGAGTTCACTGGAGAGTGCAAGAGCAGATCTTGCTCTGCTTATTTTA
TACCTAAACAAGGCTGAAGCAAGAGATAAGATCTGTAGAGCTATACAATATGGCTCGAAATTTG
TGAGTAATGGACAACCAGGGCCTGCACAGAATGTTGACAAGTCGACTAGTCTAGCTCGTAAAGT
TTTCCGACTTTTTAAGGTAAAGTTTTAATCCTTGTCCGCAGTAGATATTGCAAATGAGAAGCTA
TTTTTTCATACCTTGACATGATCTGTGGCACCACATTATTTTGCAGTTTGTTAATGATCTGCAT
GCTTTGATTAGTCCTCCTGCCAAAGGAACTCCACTACCCCTGATCTTACTTGGAAAGGTATGTT
GAAGCTTGTATTGCCTTGTAGGAACTCTGAGAACCTAAAGATACGTTTTTTCACTTCTCATTGT
ATCTTTTTGCTTTGTGCCATCCACAGTCGAAGAATGCACTGCTATCAACTTTCCTCTTTCTGGA
CCAAATTGTATGGGCTGGAAGGACAGGAATATACAAGGTTTGATTTTCTCTTCACATCATTACT
GATATACATAAGCACCATACAGCATATGGTTTTATCATACCTAGATGTTGACAGTAGAAATTAA
TGGTAGGTAATCTAATTGTTTGTACAGAACAAGGAGCGAGCAGAATTCCTCAGCAAGATAGCAT
TTTATTGCTTCCTGGGTTCTAACACATGTACTAGTATTATTGAGGTATGAGACTTCAGACTGTA
GAATCTATTTAATCCTGCCCCTGATATTATTACAATCAAGAGAATACCATCTGACTAGTATTTC
ATTATAGGTAGCCGAGCTTCAGCGGCTATCCAAGTCGATGAAGAAACTAGAGAAGGAGCTTAAA
CACCAGGAGCTGTTAAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.2176312
Functional Information
Coding potential Y
Potential coding position 1425843-1425903(+)
Potential amino acid sequence MSSLESARADLALLILYLNKAEARDKICRAIQYGSKFVSNGQPGPAQNVDKSTSLARKVFRLFK
FVNDLHALISPPAKGTPLPLILLGKSKNALLSTFLFLDQIVWAGRTGIYKNKERAEFLSKIAFY
CFLGSNTCTSIIEVAELQRLSKSMKKLEKELKHQELLKSPAIQYEFTGECKSRSCSAYFIPKQG
*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017