Detail information of Os03g0174900_circ_g.6


General Information
CircRNA Name Os03g0174900_circ_g.6
ID in PlantcircBase osa_circ_018164
Alias Os_ciR9040
Organism Oryza sativa
Position chr3: 4003371-4004198  JBrowse»
Reference genome IRGSP-1.0.38
Type   ei-circRNA
Identification method find_circ
Parent gene Os03g0174900
Parent gene annotation Similar to RAPB protein. (Os03t0174900-01)
Parent gene strand -
Alternative splicing Os03g0174900_circ_g.5
Support reads 2
Tissues root
Exon boundary   Yes-No
Splicing signals   CT-AC
Number of exons covered Os03t0174900-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGTGTTCCAAATGGTGCCTTAGAATTGAACAATATGTTTTCTCTTTTCCTAATGCCTCTTCTCA
TGGGCTTTCTCATCTCTTGCTTTTCAGTTCTACTGTaatagcatgtgtgccataagtcgctaca
gcaccaccatagaacgaatcagcatatggatatgatatgccctgaaaaggtaaagcatctttct
tgactcac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AATAGCATGTGTGCCATAAGTCGCTACAGCACCACCATAGAACGAATCAGCATATGGATATGAT
ATGCCCTGAAAAGGTAAAGCATCTTTCTTGACTCACAGACTTGCCAATGAAGAAATTCAAGTTA
CCAAGATTTATGCCACGTAAAGACACTTACAAAGGGTTGGCTACGGTCAGGTTCCGAATGTGCA
TACACAGTTTCTGATTTGCCCAGAGATAAAGCTGACATCATCTTACCTTCATCACTCTTCGTGT
AACCATCAAGATTACCTAGCATTAGTACAAGAAGAAAAGAAATGTCACATAACTTCAGTAGTGT
AGATGCAAACAAACTTTGCATCCATCAATATTCCTTTTACCCTGGAGGTGCTGTATTGCAATAT
TATTTACTGATACAAAAAATGCATATGGTGTGTCTAGTCCAAACCAGATTGATCATTCTGCTCA
TTGAGGCTTCCTTCGCTCATTCCAGACACTTCACGAGGAGATCCACTAGTTGATTGGGTAGCTG
ATGACTCGTAGTCAGGCATTTTATGACCAAACTGAATCATTACTGTGCCATTTTCTGCAAGAAT
AATGAAGTAGATGTTTTAAATTTAGTTGCATGAAAGCTAGAGATGCAAGAAAATAGACATCTAG
TTAGGAGAGCGGTATTTGCAATATTAGGCCCTATTTAGAATGCAAGAATTTTACAAGCAGTTCA
GATCATACAAAAATTGGAAATTCTCGTGTTCCAAATGGTGCCTTAGAATTGAACAATATGTTTT
CTCTTTTCCTAATGCCTCTTCTCATGGGCTTTCTCATCTCTTGCTTTTCAGTTCTACTGT
Conservation Information
Conserved circRNAs NA
PMCS 0.1258218
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015