Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT2G43410_circ_g.9 |
ID in PlantcircBase | ath_circ_018148 |
Alias | At_ciR1066, Ath_circ_FC1661, Ath_circ_FC1662, Ath_circ_FC1663, AT2G43410_C2 |
Organism | Arabidpsis thaliana |
Position | chr2: 18027929-18029348 JBrowse» |
Reference genome | TAIR10.38 |
Type | ue-circRNA |
Identification method | CIRCexplorer, PcircRNA_finder, find_circ, CIRI2 |
Parent gene | AT2G43410 |
Parent gene annotation |
Flowering time control protein FPA |
Parent gene strand | - |
Alternative splicing | AT2G43410_circ_g.1 AT2G43410_circ_g.2 AT2G43410_circ_g.3 AT2G43410_circ_g.4 AT2G43410_circ_g.5 AT2G43410_circ_g.6 AT2G43410_circ_g.7 AT2G43410_circ_g.8 AT2G43410_circ_g.10 AT2G43410_circ_g.11 |
Support reads | 5/10 |
Tissues | leaf/root, aerial, inflorescences, seed, whole_plant |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT2G43410.5:3 AT2G43410.2:3 AT2G43410.1:4 AT2G43410.6:4 AT2G43410.3:3 AT2G43410.4:3 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.420199754 |
Functional Information | |
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Coding potential | N |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | response to drought stress |
Other Information | |
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References | Ye et al., 2015;Chu et al., 2017;Chen et al., 2017a;Zhang et al., 2019 |