Detail information of AT2G43410_circ_g.9


General Information
CircRNA Name AT2G43410_circ_g.9
ID in PlantcircBase ath_circ_018148
Alias At_ciR1066, Ath_circ_FC1661, Ath_circ_FC1662, Ath_circ_FC1663, AT2G43410_C2
Organism Arabidpsis thaliana
Position chr2: 18027929-18029348  JBrowse»
Reference genome TAIR10.38
Type   ue-circRNA
Identification method CIRCexplorer, PcircRNA_finder, find_circ, CIRI2
Parent gene AT2G43410
Parent gene annotation Flowering time control protein FPA
Parent gene strand -
Alternative splicing AT2G43410_circ_g.1 AT2G43410_circ_g.2 AT2G43410_circ_g.3 AT2G43410_circ_g.4 AT2G43410_circ_g.5 AT2G43410_circ_g.6 AT2G43410_circ_g.7 AT2G43410_circ_g.8 AT2G43410_circ_g.10 AT2G43410_circ_g.11
Support reads 5/10
Tissues leaf/root, aerial, inflorescences, seed, whole_plant
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G43410.5:3
AT2G43410.2:3
AT2G43410.1:4
AT2G43410.6:4
AT2G43410.3:3
AT2G43410.4:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AATCCTCGATTTTCCCAAACTTGCTGAACTCTTCCTCCAGGTCATCCTTGGAGACATTAGGGCC
GATTCCACCCACCCATAGACTCTTACAAGGTTTTGCagtttagtttcaatcccctttcccatag
gtacacaacgagcacaacagacgggagttccacccttggcaatcattcctctccatatgtgatc
agaatcag
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1004
Transcript exons: 18027929-18028319,18028449-18028761,18028848-18028904,18
029106-18029348
AGTTTAGTTTCAATCCCCTTTCCCATAGGTACACAACGAGCACAACAGACGGGAGTTCCACCCT
TGGCAATCATTCCTCTCCATATGTGATCAGAATCAGGGGGGCCACGGATAGGTCTAGCAGCAAC
TGAACCTCGACCAAATGACCTCTCATCGACACCCATTGGAGTAAAACCGTCCACTGATCCATCT
CTTCTGGTTCGTTTACTTTCTCTGACCAACTGAGCAGGATCATATCCTTCCCAAGAATCGGGGT
TTGACCTCATAGGGCGCCTCGTACCTTGTGCAGGAGATGGGAGGATTCCAGGTCCTGTTGGAGA
TGGGAGTATTCCAGTTCCATTTGCAGATGGCCTCCTCCAGTTTGGCTCCTTACCAACAACGTCA
TTGTATTCAGAGTAAAAACTAGTATCGTCTTGCTCAGGAGGCAACTCATCGTTTGAGTACATAA
TTTTGATTCTAGGATTATTGAATAACCTCCCCTGTAGGCCTTCCTTGCATTGGCGAGCTTCCTC
CGCGCTCCTAAACTCCACAAGTGCAAAATTCCTTGATGGGTAACTTTTTACCCTCTCGATCTCA
CCAAAGAGTATCATCGCATTGTGCAGAATTTGCTCATCATTGCATTGTGTAGCAGTAGGAGGGA
ACCCAATCCACAGAACCTTACTTGGCTGGACATCTCCTTTAAAGTCTTCATATGAGTGAGGATA
CTGCGGTTTATGATTCATATTGCCATTTCTGTTATCGTAAGAGCCAGCCCATTGTTCTTTTTTT
GGCGCTTGTGACCGGAGAAAATCAACACGCAAAAAGCTACCACCCATAGGCTTTCCATTCATGC
TCTTAGCCTGTAAAGCATCATCCATCTCATAATAATCAATGAAAGCTGTCTTGCGTTCTCTGAG
AAACCTAAAATCCTCGATTTTCCCAAACTTGCTGAACTCTTCCTCCAGGTCATCCTTGGAGACA
TTAGGGCCGATTCCACCCACCCATAGACTCTTACAAGGTTTTGC

Transcript length: 1133
Transcript exons: 18027929-18028761,18028848-18028904,18029106-18029348
AGTTTAGTTTCAATCCCCTTTCCCATAGGTACACAACGAGCACAACAGACGGGAGTTCCACCCT
TGGCAATCATTCCTCTCCATATGTGATCAGAATCAGGGGGGCCACGGATAGGTCTAGCAGCAAC
TGAACCTCGACCAAATGACCTCTCATCGACACCCATTGGAGTAAAACCGTCCACTGATCCATCT
CTTCTGGTTCGTTTACTTTCTCTGACCAACTGAGCAGGATCATATCCTTCCCAAGAATCGGGGT
TTGACCTCATAGGGCGCCTCGTACCTTGTGCAGGAGATGGGAGGATTCCAGGTCCTGTTGGAGA
TGGGAGTATTCCAGTTCCATTTGCAGATGGCCTCCTCCAGTTTGGCTCCTTACCAACAACGTCA
TTGTATTCTGCACCATTATATGAACGCTCATTTGTACCTCTGAGGGGCCTCATAGACCCAGGAA
TTCCAGTAGAATGAGGAGAAGATACAAATGAAGGATCATTATTGAACATATCTGTCCTTGACCG
TTTCATACCAGAGTAAAAACTAGTATCGTCTTGCTCAGGAGGCAACTCATCGTTTGAGTACATA
ATTTTGATTCTAGGATTATTGAATAACCTCCCCTGTAGGCCTTCCTTGCATTGGCGAGCTTCCT
CCGCGCTCCTAAACTCCACAAGTGCAAAATTCCTTGATGGGTAACTTTTTACCCTCTCGATCTC
ACCAAAGAGTATCATCGCATTGTGCAGAATTTGCTCATCATTGCATTGTGTAGCAGTAGGAGGG
AACCCAATCCACAGAACCTTACTTGGCTGGACATCTCCTTTAAAGTCTTCATATGAGTGAGGAT
ACTGCGGTTTATGATTCATATTGCCATTTCTGTTATCGTAAGAGCCAGCCCATTGTTCTTTTTT
TGGCGCTTGTGACCGGAGAAAATCAACACGCAAAAAGCTACCACCCATAGGCTTTCCATTCATG
CTCTTAGCCTGTAAAGCATCATCCATCTCATAATAATCAATGAAAGCTGTCTTGCGTTCTCTGA
GAAACCTAAAATCCTCGATTTTCCCAAACTTGCTGAACTCTTCCTCCAGGTCATCCTTGGAGAC
ATTAGGGCCGATTCCACCCACCCATAGACTCTTACAAGGTTTTGC

Transcript length: 183
Transcript exons: 18027929-18027983,18029221-18029348
AGTTTAGTTTCAATCCCCTTTCCCATAGGTACACAACGAGCACAACAGACGGGAGGCTGTCTTG
CGTTCTCTGAGAAACCTAAAATCCTCGATTTTCCCAAACTTGCTGAACTCTTCCTCCAGGTCAT
CCTTGGAGACATTAGGGCCGATTCCACCCACCCATAGACTCTTACAAGGTTTTGC

Transcript length: 270
Transcript exons: 18027929-18028068,18029219-18029348
AGTTTAGTTTCAATCCCCTTTCCCATAGGTACACAACGAGCACAACAGACGGGAGTTCCACCCT
TGGCAATCATTCCTCTCCATATGTGATCAGAATCAGGGGGGCCACGGATAGGTCTAGCAGCAAC
TGAACCTCGACCAAGCTGTCTTGCGTTCTCTGAGAAACCTAAAATCCTCGATTTTCCCAAACTT
GCTGAACTCTTCCTCCAGGTCATCCTTGGAGACATTAGGGCCGATTCCACCCACCCATAGACTC
TTACAAGGTTTTGC

Genomic sequence AGTTTAGTTTCAATCCCCTTTCCCATAGGTACACAACGAGCACAACAGACGGGAGTTCCACCCT
TGGCAATCATTCCTCTCCATATGTGATCAGAATCAGGGGGGCCACGGATAGGTCTAGCAGCAAC
TGAACCTCGACCAAATGACCTCTCATCGACACCCATTGGAGTAAAACCGTCCACTGATCCATCT
CTTCTGGTTCGTTTACTTTCTCTGACCAACTGAGCAGGATCATATCCTTCCCAAGAATCGGGGT
TTGACCTCATAGGGCGCCTCGTACCTTGTGCAGGAGATGGGAGGATTCCAGGTCCTGTTGGAGA
TGGGAGTATTCCAGTTCCATTTGCAGATGGCCTCCTCCAGTTTGGCTCCTTACCAACAACGTCA
TTGTATTCTGCACCATTATATGAACGCTCATTTGTACCTCTGAGGGGCCTCATAGACCCAGGAA
TTCCAGTAGAATGAGGAGAAGATACAAATGAAGGATCATTATTGAACATATCTGTCCTTGACCG
TTTCATACCAGAGTAAAAACTAGTATCGTCTTGCTCAGGAGGCAACTCATCGTTTGAGTACATA
ATTTTGATTCTAGGATTATTGAATAACCTCCCCTGTAGGCCTTCCTTGCATTGGCGAGCTTCCT
CCGCGCTCCTAAACTCCACAAGTGCAAAATTCCTTGATGGGTAACTTTTTACCCTCTCGATCTC
ACCAAAGAGTATCATCGCATTGTGCAGAATTTGCTCATCATTGCATTGTGTAGCAGTAGGAGGG
AACCCAATCCACAGAACCTTACTTGGCTGGACATCTCCTTTAAAGTCTTCATATGAGTGAGGAT
ACTGTAAGAATATAACAAAACGTCAAAACCAGTAACCTATACATATCACTAGTAACAAGAGACA
TACTTTCAACATTCAAGACTAACCTGCGGTTTATGATTCATATTGCCATTTCTGTTATCGTAAG
AGCCAGCCCATTGTTCCTGAAGATAACACAAAGGTAACTTGATTTCAGACTTAAGAAGTTGAGC
CTACTCTACAATGAAATAGAGACGAGTAAATACTGCTCCTAGGGGCACAAGACAGAGCTCAGCC
CTATCAGTTTGACGCAAATTATGAAACTAAACAAAATGTTTACTGGAGCGTTTTCAAAAGTAAA
AATCAAATGCCACAAGAGTGCTTACTTTTTTTGGCGCTTGTGACCGGAGAAAATCAACACGCAA
AAAGCTACCACCCATAGGCTTTCCATTCATGCTCTTAGCCTGTAAAGCATCATCCATCTCATAA
TAATCAATGAAAGCTGTCTTGCGTTCTCTGAGAAACCTAAAATCCTCGATTTTCCCAAACTTGC
TGAACTCTTCCTCCAGGTCATCCTTGGAGACATTAGGGCCGATTCCACCCACCCATAGACTCTT
ACAAGGTTTTGC
Conservation Information
Conserved circRNAs NA
PMCS 0.420199754
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description response to drought stress