Plant Circular RNA Database

Detail information of AT2G43410_circ_g.3

			
						 General Information
					
						CircRNA Name
						AT2G43410_circ_g.3
					
						ID in PlantcircBase
						ath_circ_018142
					
						Alias
						At_ciR577, Ath_circ_FC1660, AT2G43410_C1
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr2: 18026359-18029348  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							u-circRNA							
									
						Identification method
						CIRCexplorer, KNIFE, MapSplice, PcircRNA_finder, circRNA_finder, find_circ, CIRI2
					
						Parent gene
						
							AT2G43410						
					
						Parent gene annotation
						
							Flowering time control protein FPA
							
						Parent gene strand
						-
					
						Alternative splicing
						
							AT2G43410_circ_g.1 AT2G43410_circ_g.2 AT2G43410_circ_g.4 AT2G43410_circ_g.5 AT2G43410_circ_g.6 AT2G43410_circ_g.7 AT2G43410_circ_g.8 AT2G43410_circ_g.9 AT2G43410_circ_g.10 AT2G43410_circ_g.11 						
					
						Support reads
						6/16
					
						Tissues
						leaf/aerial, inflorescences, whole_plant
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						AT2G43410.5:4
AT2G43410.6:5
AT2G43410.4:4
AT2G43410.1:5
AT2G43410.2:4
AT2G43410.3:4

General Information
CircRNA Name	AT2G43410_circ_g.3
ID in PlantcircBase	ath_circ_018142
Alias	At_ciR577, Ath_circ_FC1660, AT2G43410_C1
Organism	Arabidpsis thaliana
Position	chr2: 18026359-18029348 JBrowse»
Reference genome	TAIR10.38
Type	u-circRNA
Identification method	CIRCexplorer, KNIFE, MapSplice, PcircRNA_finder, circRNA_finder, find_circ, CIRI2
Parent gene	AT2G43410
Parent gene annotation	Flowering time control protein FPA
Parent gene strand	-
Alternative splicing	AT2G43410_circ_g.1 AT2G43410_circ_g.2 AT2G43410_circ_g.4 AT2G43410_circ_g.5 AT2G43410_circ_g.6 AT2G43410_circ_g.7 AT2G43410_circ_g.8 AT2G43410_circ_g.9 AT2G43410_circ_g.10 AT2G43410_circ_g.11
Support reads	6/16
Tissues	leaf/aerial, inflorescences, whole_plant
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	AT2G43410.5:4 AT2G43410.6:5 AT2G43410.4:4 AT2G43410.1:5 AT2G43410.2:4 AT2G43410.3:4

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							AATCCTCGATTTTCCCAAACTTGCTGAACTCTTCCTCCAGGTCATCCTTGGAGACATTAGGGCC
GATTCCACCCACCCATAGACTCTTACAAGGTTTTGCcttgaagattatgattatgatggagagt
ggagctagtttcaaggcccctgtccagccggagtacctgaagactgttgctgctgtttctgctg
tatctgga

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 163
Transcript exons: 18026359-18026422,18029250-18029348
CTTGAAGATTATGATTATGATGGAGAGTGGAGCTAGTTTCAAGGCCCCTGTCCAGCCGGAGTAC
ATCCTCGATTTTCCCAAACTTGCTGAACTCTTCCTCCAGGTCATCCTTGGAGACATTAGGGCCG
ATTCCACCCACCCATAGACTCTTACAAGGTTTTGC
Transcript length: 2345
Transcript exons: 18026359-18027699,18027929-18028319,18028449-18028761,18
028848-18028904,18029106-18029348
CTTGAAGATTATGATTATGATGGAGAGTGGAGCTAGTTTCAAGGCCCCTGTCCAGCCGGAGTAC
CTGAAGACTGTTGCTGCTGTTTCTGCTGTATCTGGAGAAGAAGGTTTGCTGCAAATTGTAGTGT
TGACTGGTATCTCTGATTCTTATCGACCTCCCCATCTGTTGTACCCTGACCATCCCCAGAGATC
ATAGGCTGCAATCGTAGTGCTTGGTTTTGTGGCTCTAAATTTGCCTTATCTGCTGGTGGTTGCA
TGGCAGCTTGAAATTGGGAAGGGTTTAAGTTCTGTGCCTGATTTGTTGTTACGCCATGAAAATT
AGCTTGCTGATAACTTGGAATTGGACCATAGTTTTGGTTTGGCATGGACGCTTCTGGTTGGTAT
TGCTGGACCATGGGCTGAGAAACAGGATGATTTGACGAACCCTGAGTGTACATGGAATAATTAT
TATGAGGCATATTTGGTAACGGAGACAGCTGAGGCATGTTAACAGATTGGCTCTGGTATTGCAT
GTTGCCATGGACCATTCCACTAGTGTAGTTGGGGTTGTTTGAAGCTGGAGGGTAACGCGAAGGA
GGAGGAGGTAGTTGCCCAGCTGGAGTGTACTGATTTCCGTATTGTTGGAATGACTGATTTGACG
CATCATGAACTGTTTGTGGACCTCTTTTCCAAGCTTGAGACGGTGCTTCTCCATTGTACAGTCC
ATTGGACTGATGTGCTGTGGAAACAACTGTTGAAGGTCCTGACATAGGTTGGTGACTCTCAGGG
GCAGCAGGTTGAGAAGTTGCAGGGAGAATAGATGCCAGAGTGGCTAAAAGCTCCGGAGTTAAAC
TAACCCCAGCTTGAGGCGCTGCATTATTAGGTATTCTGAGAGGCTCGCTAACAGATGGTTTTGA
AGCAGCTGTCAAATGTTCTGGTGCACCCCTAATGTAATTTTCCCTAGGAGGATATAAACTGTGA
CTAGCATTGGCAGGTGAATCCCGGGCTTGATCCATATAATGCAGAGGATTGGACTGAGATTCTT
GTCTGTATGATGCTGTAACAGGAACGGCTGGCGGGGGTAACTTGAGAACAACACCATATAGCCG
TTCTTGACGGGTCACTTGGAGTACATCAGTTAAGAAATCTGATGGAGGCACCAAGAATAAAGTT
GTACCATCATCTAATTTGGCAACACCCGCCCGATCTTTTGAGCTAAGGTACCGGAGAAATTCAG
TGTAAGACGCAAAATCTTCTTCCCTGTCTGGTACGAAAAAAACGATCTCACATCCAATGGCAAC
GGCGTAATGTTTAGCGAGCATATTCAAATCAGTTCTTGCTGAACAATTGACGACCTCAGGCAGT
TTAGTTTCAATCCCCTTTCCCATAGGTACACAACGAGCACAACAGACGGGAGTTCCACCCTTGG
CAATCATTCCTCTCCATATGTGATCAGAATCAGGGGGGCCACGGATAGGTCTAGCAGCAACTGA
ACCTCGACCAAATGACCTCTCATCGACACCCATTGGAGTAAAACCGTCCACTGATCCATCTCTT
CTGGTTCGTTTACTTTCTCTGACCAACTGAGCAGGATCATATCCTTCCCAAGAATCGGGGTTTG
ACCTCATAGGGCGCCTCGTACCTTGTGCAGGAGATGGGAGGATTCCAGGTCCTGTTGGAGATGG
GAGTATTCCAGTTCCATTTGCAGATGGCCTCCTCCAGTTTGGCTCCTTACCAACAACGTCATTG
TATTCAGAGTAAAAACTAGTATCGTCTTGCTCAGGAGGCAACTCATCGTTTGAGTACATAATTT
TGATTCTAGGATTATTGAATAACCTCCCCTGTAGGCCTTCCTTGCATTGGCGAGCTTCCTCCGC
GCTCCTAAACTCCACAAGTGCAAAATTCCTTGATGGGTAACTTTTTACCCTCTCGATCTCACCA
AAGAGTATCATCGCATTGTGCAGAATTTGCTCATCATTGCATTGTGTAGCAGTAGGAGGGAACC
CAATCCACAGAACCTTACTTGGCTGGACATCTCCTTTAAAGTCTTCATATGAGTGAGGATACTG
CGGTTTATGATTCATATTGCCATTTCTGTTATCGTAAGAGCCAGCCCATTGTTCTTTTTTTGGC
GCTTGTGACCGGAGAAAATCAACACGCAAAAAGCTACCACCCATAGGCTTTCCATTCATGCTCT
TAGCCTGTAAAGCATCATCCATCTCATAATAATCAATGAAAGCTGTCTTGCGTTCTCTGAGAAA
CCTAAAATCCTCGATTTTCCCAAACTTGCTGAACTCTTCCTCCAGGTCATCCTTGGAGACATTA
GGGCCGATTCCACCCACCCATAGACTCTTACAAGGTTTTGC
Transcript length: 2474
Transcript exons: 18026359-18027699,18027929-18028761,18028848-18028904,18
029106-18029348
CTTGAAGATTATGATTATGATGGAGAGTGGAGCTAGTTTCAAGGCCCCTGTCCAGCCGGAGTAC
CTGAAGACTGTTGCTGCTGTTTCTGCTGTATCTGGAGAAGAAGGTTTGCTGCAAATTGTAGTGT
TGACTGGTATCTCTGATTCTTATCGACCTCCCCATCTGTTGTACCCTGACCATCCCCAGAGATC
ATAGGCTGCAATCGTAGTGCTTGGTTTTGTGGCTCTAAATTTGCCTTATCTGCTGGTGGTTGCA
TGGCAGCTTGAAATTGGGAAGGGTTTAAGTTCTGTGCCTGATTTGTTGTTACGCCATGAAAATT
AGCTTGCTGATAACTTGGAATTGGACCATAGTTTTGGTTTGGCATGGACGCTTCTGGTTGGTAT
TGCTGGACCATGGGCTGAGAAACAGGATGATTTGACGAACCCTGAGTGTACATGGAATAATTAT
TATGAGGCATATTTGGTAACGGAGACAGCTGAGGCATGTTAACAGATTGGCTCTGGTATTGCAT
GTTGCCATGGACCATTCCACTAGTGTAGTTGGGGTTGTTTGAAGCTGGAGGGTAACGCGAAGGA
GGAGGAGGTAGTTGCCCAGCTGGAGTGTACTGATTTCCGTATTGTTGGAATGACTGATTTGACG
CATCATGAACTGTTTGTGGACCTCTTTTCCAAGCTTGAGACGGTGCTTCTCCATTGTACAGTCC
ATTGGACTGATGTGCTGTGGAAACAACTGTTGAAGGTCCTGACATAGGTTGGTGACTCTCAGGG
GCAGCAGGTTGAGAAGTTGCAGGGAGAATAGATGCCAGAGTGGCTAAAAGCTCCGGAGTTAAAC
TAACCCCAGCTTGAGGCGCTGCATTATTAGGTATTCTGAGAGGCTCGCTAACAGATGGTTTTGA
AGCAGCTGTCAAATGTTCTGGTGCACCCCTAATGTAATTTTCCCTAGGAGGATATAAACTGTGA
CTAGCATTGGCAGGTGAATCCCGGGCTTGATCCATATAATGCAGAGGATTGGACTGAGATTCTT
GTCTGTATGATGCTGTAACAGGAACGGCTGGCGGGGGTAACTTGAGAACAACACCATATAGCCG
TTCTTGACGGGTCACTTGGAGTACATCAGTTAAGAAATCTGATGGAGGCACCAAGAATAAAGTT
GTACCATCATCTAATTTGGCAACACCCGCCCGATCTTTTGAGCTAAGGTACCGGAGAAATTCAG
TGTAAGACGCAAAATCTTCTTCCCTGTCTGGTACGAAAAAAACGATCTCACATCCAATGGCAAC
GGCGTAATGTTTAGCGAGCATATTCAAATCAGTTCTTGCTGAACAATTGACGACCTCAGGCAGT
TTAGTTTCAATCCCCTTTCCCATAGGTACACAACGAGCACAACAGACGGGAGTTCCACCCTTGG
CAATCATTCCTCTCCATATGTGATCAGAATCAGGGGGGCCACGGATAGGTCTAGCAGCAACTGA
ACCTCGACCAAATGACCTCTCATCGACACCCATTGGAGTAAAACCGTCCACTGATCCATCTCTT
CTGGTTCGTTTACTTTCTCTGACCAACTGAGCAGGATCATATCCTTCCCAAGAATCGGGGTTTG
ACCTCATAGGGCGCCTCGTACCTTGTGCAGGAGATGGGAGGATTCCAGGTCCTGTTGGAGATGG
GAGTATTCCAGTTCCATTTGCAGATGGCCTCCTCCAGTTTGGCTCCTTACCAACAACGTCATTG
TATTCTGCACCATTATATGAACGCTCATTTGTACCTCTGAGGGGCCTCATAGACCCAGGAATTC
CAGTAGAATGAGGAGAAGATACAAATGAAGGATCATTATTGAACATATCTGTCCTTGACCGTTT
CATACCAGAGTAAAAACTAGTATCGTCTTGCTCAGGAGGCAACTCATCGTTTGAGTACATAATT
TTGATTCTAGGATTATTGAATAACCTCCCCTGTAGGCCTTCCTTGCATTGGCGAGCTTCCTCCG
CGCTCCTAAACTCCACAAGTGCAAAATTCCTTGATGGGTAACTTTTTACCCTCTCGATCTCACC
AAAGAGTATCATCGCATTGTGCAGAATTTGCTCATCATTGCATTGTGTAGCAGTAGGAGGGAAC
CCAATCCACAGAACCTTACTTGGCTGGACATCTCCTTTAAAGTCTTCATATGAGTGAGGATACT
GCGGTTTATGATTCATATTGCCATTTCTGTTATCGTAAGAGCCAGCCCATTGTTCTTTTTTTGG
CGCTTGTGACCGGAGAAAATCAACACGCAAAAAGCTACCACCCATAGGCTTTCCATTCATGCTC
TTAGCCTGTAAAGCATCATCCATCTCATAATAATCAATGAAAGCTGTCTTGCGTTCTCTGAGAA
ACCTAAAATCCTCGATTTTCCCAAACTTGCTGAACTCTTCCTCCAGGTCATCCTTGGAGACATT
AGGGCCGATTCCACCCACCCATAGACTCTTACAAGGTTTTGC
Transcript length: 320
Transcript exons: 18026359-18026513,18029184-18029348
CTTGAAGATTATGATTATGATGGAGAGTGGAGCTAGTTTCAAGGCCCCTGTCCAGCCGGAGTAC
CTGAAGACTGTTGCTGCTGTTTCTGCTGTATCTGGAGAAGAAGGTTTGCTGCAAATTGTAGTGT
TGACTGGTATCTCTGATTCTTATCGACCTGTAAAGCATCATCCATCTCATAATAATCAATGAAA
GCTGTCTTGCGTTCTCTGAGAAACCTAAAATCCTCGATTTTCCCAAACTTGCTGAACTCTTCCT
CCAGGTCATCCTTGGAGACATTAGGGCCGATTCCACCCACCCATAGACTCTTACAAGGTTTTGC
Transcript length: 326
Transcript exons: 18026359-18026436,18027928-18028007,18029181-18029348
CTTGAAGATTATGATTATGATGGAGAGTGGAGCTAGTTTCAAGGCCCCTGTCCAGCCGGAGTAC
CTGAAGACTGTTGCCAGTTTAGTTTCAATCCCCTTTCCCATAGGTACACAACGAGCACAACAGA
CGGGAGTTCCACCCTTGGCAATCATTCCTCAGCCTGTAAAGCATCATCCATCTCATAATAATCA
ATGAAAGCTGTCTTGCGTTCTCTGAGAAACCTAAAATCCTCGATTTTCCCAAACTTGCTGAACT
CTTCCTCCAGGTCATCCTTGGAGACATTAGGGCCGATTCCACCCACCCATAGACTCTTACAAGG
TTTTGC
						
					

						Genomic sequence
						
							CTTGAAGATTATGATTATGATGGAGAGTGGAGCTAGTTTCAAGGCCCCTGTCCAGCCGGAGTAC
CTGAAGACTGTTGCTGCTGTTTCTGCTGTATCTGGAGAAGAAGGTTTGCTGCAAATTGTAGTGT
TGACTGGTATCTCTGATTCTTATCGACCTCCCCATCTGTTGTACCCTGACCATCCCCAGAGATC
ATAGGCTGCAATCGTAGTGCTTGGTTTTGTGGCTCTAAATTTGCCTTATCTGCTGGTGGTTGCA
TGGCAGCTTGAAATTGGGAAGGGTTTAAGTTCTGTGCCTGATTTGTTGTTACGCCATGAAAATT
AGCTTGCTGATAACTTGGAATTGGACCATAGTTTTGGTTTGGCATGGACGCTTCTGGTTGGTAT
TGCTGGACCATGGGCTGAGAAACAGGATGATTTGACGAACCCTGAGTGTACATGGAATAATTAT
TATGAGGCATATTTGGTAACGGAGACAGCTGAGGCATGTTAACAGATTGGCTCTGGTATTGCAT
GTTGCCATGGACCATTCCACTAGTGTAGTTGGGGTTGTTTGAAGCTGGAGGGTAACGCGAAGGA
GGAGGAGGTAGTTGCCCAGCTGGAGTGTACTGATTTCCGTATTGTTGGAATGACTGATTTGACG
CATCATGAACTGTTTGTGGACCTCTTTTCCAAGCTTGAGACGGTGCTTCTCCATTGTACAGTCC
ATTGGACTGATGTGCTGTGGAAACAACTGTTGAAGGTCCTGACATAGGTTGGTGACTCTCAGGG
GCAGCAGGTTGAGAAGTTGCAGGGAGAATAGATGCCAGAGTGGCTAAAAGCTCCGGAGTTAAAC
TAACCCCAGCTTGAGGCGCTGCATTATTAGGTATTCTGAGAGGCTCGCTAACAGATGGTTTTGA
AGCAGCTGTCAAATGTTCTGGTGCACCCCTAATGTAATTTTCCCTAGGAGGATATAAACTGTGA
CTAGCATTGGCAGGTGAATCCCGGGCTTGATCCATATAATGCAGAGGATTGGACTGAGATTCTT
GTCTGTATGATGCTGTAACAGGAACGGCTGGCGGGGGTAACTTGAGAACAACACCATATAGCCG
TTCTTGACGGGTCACTTGGAGTACATCAGTTAAGAAATCTGATGGAGGCACCAAGAATAAAGTT
GTACCATCATCTAATTTGGCAACACCCGCCCGATCTTTTGAGCTAAGGTACCGGAGAAATTCAG
TGTAAGACGCAAAATCTTCTTCCCTGTCTGGTACGAAAAAAACGATCTCACATCCAATGGCAAC
GGCGTAATGTTTAGCGAGCATATTCAAATCAGTTCTTGCTGAACAATTGACGACCTCAGGCCTA
TAAATCAATTATTAAAAAAAAAACAAAGTCAGTAATTGAGGGCAATGCCAAAAATGAATCAACA
CCATGAAAATCAAGACATCTCAGAAACTAAACAAGTAATAGTAAAATAAAAATGTACTATCTAT
AATAATGTTACTTCCATCGAGAATGAAATGGAAAATATATAAATCGCTCTGAAAAAGAAAACAC
TAGAAGGGTTAAAGTGCTAGAAATTAGTACTCACAGTTTAGTTTCAATCCCCTTTCCCATAGGT
ACACAACGAGCACAACAGACGGGAGTTCCACCCTTGGCAATCATTCCTCTCCATATGTGATCAG
AATCAGGGGGGCCACGGATAGGTCTAGCAGCAACTGAACCTCGACCAAATGACCTCTCATCGAC
ACCCATTGGAGTAAAACCGTCCACTGATCCATCTCTTCTGGTTCGTTTACTTTCTCTGACCAAC
TGAGCAGGATCATATCCTTCCCAAGAATCGGGGTTTGACCTCATAGGGCGCCTCGTACCTTGTG
CAGGAGATGGGAGGATTCCAGGTCCTGTTGGAGATGGGAGTATTCCAGTTCCATTTGCAGATGG
CCTCCTCCAGTTTGGCTCCTTACCAACAACGTCATTGTATTCTGCACCATTATATGAACGCTCA
TTTGTACCTCTGAGGGGCCTCATAGACCCAGGAATTCCAGTAGAATGAGGAGAAGATACAAATG
AAGGATCATTATTGAACATATCTGTCCTTGACCGTTTCATACCAGAGTAAAAACTAGTATCGTC
TTGCTCAGGAGGCAACTCATCGTTTGAGTACATAATTTTGATTCTAGGATTATTGAATAACCTC
CCCTGTAGGCCTTCCTTGCATTGGCGAGCTTCCTCCGCGCTCCTAAACTCCACAAGTGCAAAAT
TCCTTGATGGGTAACTTTTTACCCTCTCGATCTCACCAAAGAGTATCATCGCATTGTGCAGAAT
TTGCTCATCATTGCATTGTGTAGCAGTAGGAGGGAACCCAATCCACAGAACCTTACTTGGCTGG
ACATCTCCTTTAAAGTCTTCATATGAGTGAGGATACTGTAAGAATATAACAAAACGTCAAAACC
AGTAACCTATACATATCACTAGTAACAAGAGACATACTTTCAACATTCAAGACTAACCTGCGGT
TTATGATTCATATTGCCATTTCTGTTATCGTAAGAGCCAGCCCATTGTTCCTGAAGATAACACA
AAGGTAACTTGATTTCAGACTTAAGAAGTTGAGCCTACTCTACAATGAAATAGAGACGAGTAAA
TACTGCTCCTAGGGGCACAAGACAGAGCTCAGCCCTATCAGTTTGACGCAAATTATGAAACTAA
ACAAAATGTTTACTGGAGCGTTTTCAAAAGTAAAAATCAAATGCCACAAGAGTGCTTACTTTTT
TTGGCGCTTGTGACCGGAGAAAATCAACACGCAAAAAGCTACCACCCATAGGCTTTCCATTCAT
GCTCTTAGCCTGTAAAGCATCATCCATCTCATAATAATCAATGAAAGCTGTCTTGCGTTCTCTG
AGAAACCTAAAATCCTCGATTTTCCCAAACTTGCTGAACTCTTCCTCCAGGTCATCCTTGGAGA
CATTAGGGCCGATTCCACCCACCCATAGACTCTTACAAGGTTTTGC
						
					

			
		

Sequences
Splice junction sequence	AATCCTCGATTTTCCCAAACTTGCTGAACTCTTCCTCCAGGTCATCCTTGGAGACATTAGGGCC GATTCCACCCACCCATAGACTCTTACAAGGTTTTGCcttgaagattatgattatgatggagagt ggagctagtttcaaggcccctgtccagccggagtacctgaagactgttgctgctgtttctgctg tatctgga
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 163 Transcript exons: 18026359-18026422,18029250-18029348 CTTGAAGATTATGATTATGATGGAGAGTGGAGCTAGTTTCAAGGCCCCTGTCCAGCCGGAGTAC ATCCTCGATTTTCCCAAACTTGCTGAACTCTTCCTCCAGGTCATCCTTGGAGACATTAGGGCCG ATTCCACCCACCCATAGACTCTTACAAGGTTTTGC Transcript length: 2345 Transcript exons: 18026359-18027699,18027929-18028319,18028449-18028761,18 028848-18028904,18029106-18029348 CTTGAAGATTATGATTATGATGGAGAGTGGAGCTAGTTTCAAGGCCCCTGTCCAGCCGGAGTAC CTGAAGACTGTTGCTGCTGTTTCTGCTGTATCTGGAGAAGAAGGTTTGCTGCAAATTGTAGTGT TGACTGGTATCTCTGATTCTTATCGACCTCCCCATCTGTTGTACCCTGACCATCCCCAGAGATC ATAGGCTGCAATCGTAGTGCTTGGTTTTGTGGCTCTAAATTTGCCTTATCTGCTGGTGGTTGCA TGGCAGCTTGAAATTGGGAAGGGTTTAAGTTCTGTGCCTGATTTGTTGTTACGCCATGAAAATT AGCTTGCTGATAACTTGGAATTGGACCATAGTTTTGGTTTGGCATGGACGCTTCTGGTTGGTAT TGCTGGACCATGGGCTGAGAAACAGGATGATTTGACGAACCCTGAGTGTACATGGAATAATTAT TATGAGGCATATTTGGTAACGGAGACAGCTGAGGCATGTTAACAGATTGGCTCTGGTATTGCAT GTTGCCATGGACCATTCCACTAGTGTAGTTGGGGTTGTTTGAAGCTGGAGGGTAACGCGAAGGA GGAGGAGGTAGTTGCCCAGCTGGAGTGTACTGATTTCCGTATTGTTGGAATGACTGATTTGACG CATCATGAACTGTTTGTGGACCTCTTTTCCAAGCTTGAGACGGTGCTTCTCCATTGTACAGTCC ATTGGACTGATGTGCTGTGGAAACAACTGTTGAAGGTCCTGACATAGGTTGGTGACTCTCAGGG GCAGCAGGTTGAGAAGTTGCAGGGAGAATAGATGCCAGAGTGGCTAAAAGCTCCGGAGTTAAAC TAACCCCAGCTTGAGGCGCTGCATTATTAGGTATTCTGAGAGGCTCGCTAACAGATGGTTTTGA AGCAGCTGTCAAATGTTCTGGTGCACCCCTAATGTAATTTTCCCTAGGAGGATATAAACTGTGA CTAGCATTGGCAGGTGAATCCCGGGCTTGATCCATATAATGCAGAGGATTGGACTGAGATTCTT GTCTGTATGATGCTGTAACAGGAACGGCTGGCGGGGGTAACTTGAGAACAACACCATATAGCCG TTCTTGACGGGTCACTTGGAGTACATCAGTTAAGAAATCTGATGGAGGCACCAAGAATAAAGTT GTACCATCATCTAATTTGGCAACACCCGCCCGATCTTTTGAGCTAAGGTACCGGAGAAATTCAG TGTAAGACGCAAAATCTTCTTCCCTGTCTGGTACGAAAAAAACGATCTCACATCCAATGGCAAC GGCGTAATGTTTAGCGAGCATATTCAAATCAGTTCTTGCTGAACAATTGACGACCTCAGGCAGT TTAGTTTCAATCCCCTTTCCCATAGGTACACAACGAGCACAACAGACGGGAGTTCCACCCTTGG CAATCATTCCTCTCCATATGTGATCAGAATCAGGGGGGCCACGGATAGGTCTAGCAGCAACTGA ACCTCGACCAAATGACCTCTCATCGACACCCATTGGAGTAAAACCGTCCACTGATCCATCTCTT CTGGTTCGTTTACTTTCTCTGACCAACTGAGCAGGATCATATCCTTCCCAAGAATCGGGGTTTG ACCTCATAGGGCGCCTCGTACCTTGTGCAGGAGATGGGAGGATTCCAGGTCCTGTTGGAGATGG GAGTATTCCAGTTCCATTTGCAGATGGCCTCCTCCAGTTTGGCTCCTTACCAACAACGTCATTG TATTCAGAGTAAAAACTAGTATCGTCTTGCTCAGGAGGCAACTCATCGTTTGAGTACATAATTT TGATTCTAGGATTATTGAATAACCTCCCCTGTAGGCCTTCCTTGCATTGGCGAGCTTCCTCCGC GCTCCTAAACTCCACAAGTGCAAAATTCCTTGATGGGTAACTTTTTACCCTCTCGATCTCACCA AAGAGTATCATCGCATTGTGCAGAATTTGCTCATCATTGCATTGTGTAGCAGTAGGAGGGAACC CAATCCACAGAACCTTACTTGGCTGGACATCTCCTTTAAAGTCTTCATATGAGTGAGGATACTG CGGTTTATGATTCATATTGCCATTTCTGTTATCGTAAGAGCCAGCCCATTGTTCTTTTTTTGGC GCTTGTGACCGGAGAAAATCAACACGCAAAAAGCTACCACCCATAGGCTTTCCATTCATGCTCT TAGCCTGTAAAGCATCATCCATCTCATAATAATCAATGAAAGCTGTCTTGCGTTCTCTGAGAAA CCTAAAATCCTCGATTTTCCCAAACTTGCTGAACTCTTCCTCCAGGTCATCCTTGGAGACATTA GGGCCGATTCCACCCACCCATAGACTCTTACAAGGTTTTGC Transcript length: 2474 Transcript exons: 18026359-18027699,18027929-18028761,18028848-18028904,18 029106-18029348 CTTGAAGATTATGATTATGATGGAGAGTGGAGCTAGTTTCAAGGCCCCTGTCCAGCCGGAGTAC CTGAAGACTGTTGCTGCTGTTTCTGCTGTATCTGGAGAAGAAGGTTTGCTGCAAATTGTAGTGT TGACTGGTATCTCTGATTCTTATCGACCTCCCCATCTGTTGTACCCTGACCATCCCCAGAGATC ATAGGCTGCAATCGTAGTGCTTGGTTTTGTGGCTCTAAATTTGCCTTATCTGCTGGTGGTTGCA TGGCAGCTTGAAATTGGGAAGGGTTTAAGTTCTGTGCCTGATTTGTTGTTACGCCATGAAAATT AGCTTGCTGATAACTTGGAATTGGACCATAGTTTTGGTTTGGCATGGACGCTTCTGGTTGGTAT TGCTGGACCATGGGCTGAGAAACAGGATGATTTGACGAACCCTGAGTGTACATGGAATAATTAT TATGAGGCATATTTGGTAACGGAGACAGCTGAGGCATGTTAACAGATTGGCTCTGGTATTGCAT GTTGCCATGGACCATTCCACTAGTGTAGTTGGGGTTGTTTGAAGCTGGAGGGTAACGCGAAGGA GGAGGAGGTAGTTGCCCAGCTGGAGTGTACTGATTTCCGTATTGTTGGAATGACTGATTTGACG CATCATGAACTGTTTGTGGACCTCTTTTCCAAGCTTGAGACGGTGCTTCTCCATTGTACAGTCC ATTGGACTGATGTGCTGTGGAAACAACTGTTGAAGGTCCTGACATAGGTTGGTGACTCTCAGGG GCAGCAGGTTGAGAAGTTGCAGGGAGAATAGATGCCAGAGTGGCTAAAAGCTCCGGAGTTAAAC TAACCCCAGCTTGAGGCGCTGCATTATTAGGTATTCTGAGAGGCTCGCTAACAGATGGTTTTGA AGCAGCTGTCAAATGTTCTGGTGCACCCCTAATGTAATTTTCCCTAGGAGGATATAAACTGTGA CTAGCATTGGCAGGTGAATCCCGGGCTTGATCCATATAATGCAGAGGATTGGACTGAGATTCTT GTCTGTATGATGCTGTAACAGGAACGGCTGGCGGGGGTAACTTGAGAACAACACCATATAGCCG TTCTTGACGGGTCACTTGGAGTACATCAGTTAAGAAATCTGATGGAGGCACCAAGAATAAAGTT GTACCATCATCTAATTTGGCAACACCCGCCCGATCTTTTGAGCTAAGGTACCGGAGAAATTCAG TGTAAGACGCAAAATCTTCTTCCCTGTCTGGTACGAAAAAAACGATCTCACATCCAATGGCAAC GGCGTAATGTTTAGCGAGCATATTCAAATCAGTTCTTGCTGAACAATTGACGACCTCAGGCAGT TTAGTTTCAATCCCCTTTCCCATAGGTACACAACGAGCACAACAGACGGGAGTTCCACCCTTGG CAATCATTCCTCTCCATATGTGATCAGAATCAGGGGGGCCACGGATAGGTCTAGCAGCAACTGA ACCTCGACCAAATGACCTCTCATCGACACCCATTGGAGTAAAACCGTCCACTGATCCATCTCTT CTGGTTCGTTTACTTTCTCTGACCAACTGAGCAGGATCATATCCTTCCCAAGAATCGGGGTTTG ACCTCATAGGGCGCCTCGTACCTTGTGCAGGAGATGGGAGGATTCCAGGTCCTGTTGGAGATGG GAGTATTCCAGTTCCATTTGCAGATGGCCTCCTCCAGTTTGGCTCCTTACCAACAACGTCATTG TATTCTGCACCATTATATGAACGCTCATTTGTACCTCTGAGGGGCCTCATAGACCCAGGAATTC CAGTAGAATGAGGAGAAGATACAAATGAAGGATCATTATTGAACATATCTGTCCTTGACCGTTT CATACCAGAGTAAAAACTAGTATCGTCTTGCTCAGGAGGCAACTCATCGTTTGAGTACATAATT TTGATTCTAGGATTATTGAATAACCTCCCCTGTAGGCCTTCCTTGCATTGGCGAGCTTCCTCCG CGCTCCTAAACTCCACAAGTGCAAAATTCCTTGATGGGTAACTTTTTACCCTCTCGATCTCACC AAAGAGTATCATCGCATTGTGCAGAATTTGCTCATCATTGCATTGTGTAGCAGTAGGAGGGAAC CCAATCCACAGAACCTTACTTGGCTGGACATCTCCTTTAAAGTCTTCATATGAGTGAGGATACT GCGGTTTATGATTCATATTGCCATTTCTGTTATCGTAAGAGCCAGCCCATTGTTCTTTTTTTGG CGCTTGTGACCGGAGAAAATCAACACGCAAAAAGCTACCACCCATAGGCTTTCCATTCATGCTC TTAGCCTGTAAAGCATCATCCATCTCATAATAATCAATGAAAGCTGTCTTGCGTTCTCTGAGAA ACCTAAAATCCTCGATTTTCCCAAACTTGCTGAACTCTTCCTCCAGGTCATCCTTGGAGACATT AGGGCCGATTCCACCCACCCATAGACTCTTACAAGGTTTTGC Transcript length: 320 Transcript exons: 18026359-18026513,18029184-18029348 CTTGAAGATTATGATTATGATGGAGAGTGGAGCTAGTTTCAAGGCCCCTGTCCAGCCGGAGTAC CTGAAGACTGTTGCTGCTGTTTCTGCTGTATCTGGAGAAGAAGGTTTGCTGCAAATTGTAGTGT TGACTGGTATCTCTGATTCTTATCGACCTGTAAAGCATCATCCATCTCATAATAATCAATGAAA GCTGTCTTGCGTTCTCTGAGAAACCTAAAATCCTCGATTTTCCCAAACTTGCTGAACTCTTCCT CCAGGTCATCCTTGGAGACATTAGGGCCGATTCCACCCACCCATAGACTCTTACAAGGTTTTGC Transcript length: 326 Transcript exons: 18026359-18026436,18027928-18028007,18029181-18029348 CTTGAAGATTATGATTATGATGGAGAGTGGAGCTAGTTTCAAGGCCCCTGTCCAGCCGGAGTAC CTGAAGACTGTTGCCAGTTTAGTTTCAATCCCCTTTCCCATAGGTACACAACGAGCACAACAGA CGGGAGTTCCACCCTTGGCAATCATTCCTCAGCCTGTAAAGCATCATCCATCTCATAATAATCA ATGAAAGCTGTCTTGCGTTCTCTGAGAAACCTAAAATCCTCGATTTTCCCAAACTTGCTGAACT CTTCCTCCAGGTCATCCTTGGAGACATTAGGGCCGATTCCACCCACCCATAGACTCTTACAAGG TTTTGC
Genomic sequence	CTTGAAGATTATGATTATGATGGAGAGTGGAGCTAGTTTCAAGGCCCCTGTCCAGCCGGAGTAC CTGAAGACTGTTGCTGCTGTTTCTGCTGTATCTGGAGAAGAAGGTTTGCTGCAAATTGTAGTGT TGACTGGTATCTCTGATTCTTATCGACCTCCCCATCTGTTGTACCCTGACCATCCCCAGAGATC ATAGGCTGCAATCGTAGTGCTTGGTTTTGTGGCTCTAAATTTGCCTTATCTGCTGGTGGTTGCA TGGCAGCTTGAAATTGGGAAGGGTTTAAGTTCTGTGCCTGATTTGTTGTTACGCCATGAAAATT AGCTTGCTGATAACTTGGAATTGGACCATAGTTTTGGTTTGGCATGGACGCTTCTGGTTGGTAT TGCTGGACCATGGGCTGAGAAACAGGATGATTTGACGAACCCTGAGTGTACATGGAATAATTAT TATGAGGCATATTTGGTAACGGAGACAGCTGAGGCATGTTAACAGATTGGCTCTGGTATTGCAT GTTGCCATGGACCATTCCACTAGTGTAGTTGGGGTTGTTTGAAGCTGGAGGGTAACGCGAAGGA GGAGGAGGTAGTTGCCCAGCTGGAGTGTACTGATTTCCGTATTGTTGGAATGACTGATTTGACG CATCATGAACTGTTTGTGGACCTCTTTTCCAAGCTTGAGACGGTGCTTCTCCATTGTACAGTCC ATTGGACTGATGTGCTGTGGAAACAACTGTTGAAGGTCCTGACATAGGTTGGTGACTCTCAGGG GCAGCAGGTTGAGAAGTTGCAGGGAGAATAGATGCCAGAGTGGCTAAAAGCTCCGGAGTTAAAC TAACCCCAGCTTGAGGCGCTGCATTATTAGGTATTCTGAGAGGCTCGCTAACAGATGGTTTTGA AGCAGCTGTCAAATGTTCTGGTGCACCCCTAATGTAATTTTCCCTAGGAGGATATAAACTGTGA CTAGCATTGGCAGGTGAATCCCGGGCTTGATCCATATAATGCAGAGGATTGGACTGAGATTCTT GTCTGTATGATGCTGTAACAGGAACGGCTGGCGGGGGTAACTTGAGAACAACACCATATAGCCG TTCTTGACGGGTCACTTGGAGTACATCAGTTAAGAAATCTGATGGAGGCACCAAGAATAAAGTT GTACCATCATCTAATTTGGCAACACCCGCCCGATCTTTTGAGCTAAGGTACCGGAGAAATTCAG TGTAAGACGCAAAATCTTCTTCCCTGTCTGGTACGAAAAAAACGATCTCACATCCAATGGCAAC GGCGTAATGTTTAGCGAGCATATTCAAATCAGTTCTTGCTGAACAATTGACGACCTCAGGCCTA TAAATCAATTATTAAAAAAAAAACAAAGTCAGTAATTGAGGGCAATGCCAAAAATGAATCAACA CCATGAAAATCAAGACATCTCAGAAACTAAACAAGTAATAGTAAAATAAAAATGTACTATCTAT AATAATGTTACTTCCATCGAGAATGAAATGGAAAATATATAAATCGCTCTGAAAAAGAAAACAC TAGAAGGGTTAAAGTGCTAGAAATTAGTACTCACAGTTTAGTTTCAATCCCCTTTCCCATAGGT ACACAACGAGCACAACAGACGGGAGTTCCACCCTTGGCAATCATTCCTCTCCATATGTGATCAG AATCAGGGGGGCCACGGATAGGTCTAGCAGCAACTGAACCTCGACCAAATGACCTCTCATCGAC ACCCATTGGAGTAAAACCGTCCACTGATCCATCTCTTCTGGTTCGTTTACTTTCTCTGACCAAC TGAGCAGGATCATATCCTTCCCAAGAATCGGGGTTTGACCTCATAGGGCGCCTCGTACCTTGTG CAGGAGATGGGAGGATTCCAGGTCCTGTTGGAGATGGGAGTATTCCAGTTCCATTTGCAGATGG CCTCCTCCAGTTTGGCTCCTTACCAACAACGTCATTGTATTCTGCACCATTATATGAACGCTCA TTTGTACCTCTGAGGGGCCTCATAGACCCAGGAATTCCAGTAGAATGAGGAGAAGATACAAATG AAGGATCATTATTGAACATATCTGTCCTTGACCGTTTCATACCAGAGTAAAAACTAGTATCGTC TTGCTCAGGAGGCAACTCATCGTTTGAGTACATAATTTTGATTCTAGGATTATTGAATAACCTC CCCTGTAGGCCTTCCTTGCATTGGCGAGCTTCCTCCGCGCTCCTAAACTCCACAAGTGCAAAAT TCCTTGATGGGTAACTTTTTACCCTCTCGATCTCACCAAAGAGTATCATCGCATTGTGCAGAAT TTGCTCATCATTGCATTGTGTAGCAGTAGGAGGGAACCCAATCCACAGAACCTTACTTGGCTGG ACATCTCCTTTAAAGTCTTCATATGAGTGAGGATACTGTAAGAATATAACAAAACGTCAAAACC AGTAACCTATACATATCACTAGTAACAAGAGACATACTTTCAACATTCAAGACTAACCTGCGGT TTATGATTCATATTGCCATTTCTGTTATCGTAAGAGCCAGCCCATTGTTCCTGAAGATAACACA AAGGTAACTTGATTTCAGACTTAAGAAGTTGAGCCTACTCTACAATGAAATAGAGACGAGTAAA TACTGCTCCTAGGGGCACAAGACAGAGCTCAGCCCTATCAGTTTGACGCAAATTATGAAACTAA ACAAAATGTTTACTGGAGCGTTTTCAAAAGTAAAAATCAAATGCCACAAGAGTGCTTACTTTTT TTGGCGCTTGTGACCGGAGAAAATCAACACGCAAAAAGCTACCACCCATAGGCTTTCCATTCAT GCTCTTAGCCTGTAAAGCATCATCCATCTCATAATAATCAATGAAAGCTGTCTTGCGTTCTCTG AGAAACCTAAAATCCTCGATTTTCCCAAACTTGCTGAACTCTTCCTCCAGGTCATCCTTGGAGA CATTAGGGCCGATTCCACCCACCCATAGACTCTTACAAGGTTTTGC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.557363665

Conservation Information
Conserved circRNAs	NA
PMCS	0.557363665

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						response to drought stress

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	response to drought stress

			
						 Other Information
					
						References
						Ye et al., 2015;Chu et al., 2017;Chen et al., 2017a;Liu et al., 2017;Zhang et al., 2019

circRNA

Detail information of AT2G43410_circ_g.3

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