Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT5G25040_circ_g.2 |
ID in PlantcircBase | ath_circ_040308 |
Alias | 5:8623706-8623970 |
Organism | Arabidpsis thaliana |
Position | chr5: 8623706-8623970 JBrowse» |
Reference genome | TAIR10.38 |
Type | ue-circRNA |
Identification method | find_circ; CIRI2 |
Parent gene | AT5G25040 |
Parent gene annotation |
Major facilitator superfamily protein |
Parent gene strand | + |
Alternative splicing | 5_circ_ag.2 5_circ_ag.3 AT5G25040_circ_g.1 5_circ_ag.3 5_circ_ag.4 AT5G25050_circ_g.1 AT5G25050_circ_g.2 AT5G25050_circ_g.3 |
Support reads | 1/1 |
Tissues | seedling;flower |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT5G25040.3:1 AT5G25040.1:2 AT5G25040.2:1 AT5G25040.4:1 AT5G25040.5:1 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.336017066 |
Functional Information | |
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Coding potential | NA |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Philips et al., 2020 |