Detail information of Os08g0307400_circ_g.5


General Information
CircRNA Name Os08g0307400_circ_g.5
ID in PlantcircBase osa_circ_036653
Alias Os_ciR4432
Organism Oryza sativa
Position chr8: 12856578-12864756  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer, find_circ
Parent gene Os08g0307400
Parent gene annotation Similar to Phosphatidylinositol 3-kinase 1. (Os08t0307400-01);Si
milar to Phosphatidylinositol 3-kinase, root isoform (EC 2.7.1.1
37) (PI3- kinase) (PtdIns-3-kinase) (PI3K) (SPI3K-5). (Os08t0307
400-02);Similar to Phosphatidylinositol 3-kinase 1. (Os08t030740
0-03)
Parent gene strand -
Alternative splicing Os08g0307400_circ_g.1 Os08g0307400_circ_g.2 Os08g0307400_circ_g.3 Os08g0307400_circ_g.4 Os08g0307400_circ_g.6 Os08g0307400_circ_g.7 Os08g0307400_circ_g.8 Os08g0307400_circ_g.9
Support reads 5/1
Tissues root/root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os08t0307400-03:10
Os08t0307400-02:10
Os08t0307400-01:10
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGATTCGCCCAATCTCAGGATCACATGCAATAACAAGTTTATTCTTAGATATATCCACTAAGGA
TGAAGGGACTGATGTATGCAACTTTGCTCCATATTCctttcagtaccacccatggcctcaacca
tttctttgcataatttcatcggtggtgatggtggtgcaaatcgatgtggttgttccccaagcat
atacgaga
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1492
Transcript exons: 12856578-12856730,12858088-12858242,12860561-12860698,12
860787-12860957,12861120-12861301,12861411-12861532,1286
2859-12862994,12863350-12863445,12864088-12864235,128645
66-12864756
CTTTCAGTACCACCCATGGCCTCAACCATTTCTTTGCATAATTTCATCGGTGGTGATGGTGGTG
CAAATCGATGTGGTTGTTCCCCAAGCATATACGAGAAGTCAACATGGAAAAGTCTTCCATCGTC
TTGTAGGAGAAGGTTGTCAAGATGCCTGTCTCCAATCCCCAGTATGTATGTAATGACACTGTAG
CCAGCACAACTTTTTATAAAAGTTTCCAAACATTGGGCAGTTATACCAAAAGGGCCATCTTCAT
CCGGATTACACTTTTGTAGGTAACTTTCTATACTGCCCGTTTTTTGTATAATCTTTGCAACAGA
AATTGAAGGAATAAACTCAACCAACCCTTCTTCTAGACCAGTCGCAAGAACTTGATAAGGAGTA
AGGTGTAAGTCTAGATTATCTGACTTGAGCAACCGATCCATCAAAGAGATTATTTGAATAACCA
ACTGATCCTTGCGGAGATTATCTCCCTTCTTGAAAATCATTTTCGATGTACCCCCATTCACAGT
ACTAAATGCTATACACAATGGATAATTAGCACTTTTGAATACCAATGACTCTTCAGGCACAATT
CCGTCAAGGAGGACAGTCGGTGTTAATGGAGATGGAATTGGCTCACTGAAGTTTTTAAGCTCAC
TGAAAATTCCGGAGAATAACTGTTCTAATATCCTGCCTTTAGTTTGTGCGTCATGTTTGACATT
TGATAGTTCCTTCATTATAGAACGTAACTGAGCAGTGAGTTCTGCCTGCTCTATCAAACTCTGC
CACACTTGAAATCCATTTTCCTCCTTATGTATCTCATTATAGCATCTTCAAGCATCTCATATGT
ACATAGATACCTTCTTGCATGAGAAGGATCATGAAGCTCAACAACTAAATACCAGCGAAGAAAG
CTAGCAAGTTCGTAATTTGACAAAGCCCGATTCACAAGGAAGTGTGCTAGACGAGATCTGTCAG
ATCTTTCAAACCGCAGGCCTTGTACAAGTTGCAGCAAATAGCATTGCAGTTCTTCGTCGCTGGC
CCTTTCAAACACGCCGACAGCATAAGCACGAACTTCCTCATTTTGAAAAACTGGTGAAAGAAGC
CCCAATGCATCAGCCACATCAATAGATTCCCACCTTGGAATCAACGCAACAGCTTGTTTGGCTT
CCTGGATGTCACTCCATTCCACAGAGAGGAGGAACTTTACAAGAGCTTTCTTCTCAGATGTCAA
ATAGAAACGAAATTTCCACAACAATTGCTTTTCATCCACATTTAAAGTGCGTGTGGGTGGATAC
TTGAGGATGTTTTGTATTAACTTTTGGTCAACTGAGCTTGGCTTCATCTCTCTATCATTTACTC
CACGAGCCAAGCTCCAAGCAAGCACAGAGTGTTTATGCTCAGATGGATTGATTCGCCCAATCTC
AGGATCACATGCAATAACAAGTTTATTCTTAGATATATCCACTAAGGATGAAGGGACTGATGTA
TGCAACTTTGCTCCATATTC

Transcript length: 1496
Transcript exons: 12856578-12856730,12858088-12858242,12860561-12860698,12
860787-12860957,12861120-12861305,12861411-12861532,1286
2859-12862994,12863350-12863445,12864088-12864235,128645
66-12864756
CTTTCAGTACCACCCATGGCCTCAACCATTTCTTTGCATAATTTCATCGGTGGTGATGGTGGTG
CAAATCGATGTGGTTGTTCCCCAAGCATATACGAGAAGTCAACATGGAAAAGTCTTCCATCGTC
TTGTAGGAGAAGGTTGTCAAGATGCCTGTCTCCAATCCCCAGTATGTATGTAATGACACTGTAG
CCAGCACAACTTTTTATAAAAGTTTCCAAACATTGGGCAGTTATACCAAAAGGGCCATCTTCAT
CCGGATTACACTTTTGTAGGTAACTTTCTATACTGCCCGTTTTTTGTATAATCTTTGCAACAGA
AATTGAAGGAATAAACTCAACCAACCCTTCTTCTAGACCAGTCGCAAGAACTTGATAAGGAGTA
AGGTGTAAGTCTAGATTATCTGACTTGAGCAACCGATCCATCAAAGAGATTATTTGAATAACCA
ACTGATCCTTGCGGAGATTATCTCCCTTCTTGAAAATCATTTTCGATGTACCCCCATTCACAGT
ACTAAATGCTATACACAATGGATAATTAGCACTTTTGAATACCAATGACTCTTCAGGCACAATT
CCGTCAAGGAGGACAGTCGGTGTTAATGGAGATGGAATTGGCTCACTGAAGTTTTTAAGCTCAC
TGAAAATTCCGGAGAATAACTGTTCTAATATCCTGCCTTTAGTTTGTGCGTCATGTTTGACATT
TGATAGTTCCTTCATTATAGAACGTAACTGAGCAGTGAGTTCTGCCTGCTCTATCAAACTCTGC
CACACTTGAAATCCATTTTCCTCCTTATGTACTGATCTCATTATAGCATCTTCAAGCATCTCAT
ATGTACATAGATACCTTCTTGCATGAGAAGGATCATGAAGCTCAACAACTAAATACCAGCGAAG
AAAGCTAGCAAGTTCGTAATTTGACAAAGCCCGATTCACAAGGAAGTGTGCTAGACGAGATCTG
TCAGATCTTTCAAACCGCAGGCCTTGTACAAGTTGCAGCAAATAGCATTGCAGTTCTTCGTCGC
TGGCCCTTTCAAACACGCCGACAGCATAAGCACGAACTTCCTCATTTTGAAAAACTGGTGAAAG
AAGCCCCAATGCATCAGCCACATCAATAGATTCCCACCTTGGAATCAACGCAACAGCTTGTTTG
GCTTCCTGGATGTCACTCCATTCCACAGAGAGGAGGAACTTTACAAGAGCTTTCTTCTCAGATG
TCAAATAGAAACGAAATTTCCACAACAATTGCTTTTCATCCACATTTAAAGTGCGTGTGGGTGG
ATACTTGAGGATGTTTTGTATTAACTTTTGGTCAACTGAGCTTGGCTTCATCTCTCTATCATTT
ACTCCACGAGCCAAGCTCCAAGCAAGCACAGAGTGTTTATGCTCAGATGGATTGATTCGCCCAA
TCTCAGGATCACATGCAATAACAAGTTTATTCTTAGATATATCCACTAAGGATGAAGGGACTGA
TGTATGCAACTTTGCTCCATATTC

Transcript length: 232
Transcript exons: 12856578-12856661,12864609-12864756
CTTTCAGTACCACCCATGGCCTCAACCATTTCTTTGCATAATTTCATCGGTGGTGATGGTGGTG
CAAATCGATGTGGTTGTTCCCACGAGCCAAGCTCCAAGCAAGCACAGAGTGTTTATGCTCAGAT
GGATTGATTCGCCCAATCTCAGGATCACATGCAATAACAAGTTTATTCTTAGATATATCCACTA
AGGATGAAGGGACTGATGTATGCAACTTTGCTCCATATTC

Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs NA
PMCS 0.193949928
Functional Information
Coding potential Y
Potential coding position 12864222-12858112(+)
12864721-12856615(+)
12864737-12858123(+)
12864593-12864716(-)
Potential amino acid sequence MFCINFWSTELGFISLSFTPRAKLQASTECLCSDGLIRPISGSHAITSLFLDISTKDEGTDVCN
FAPYSFQYHPWPQPFLCIISSVVMVVQIDVVVPQAYTRSQHGKVFHRLVGEGCQDACLQSPVCM
*(+)
MKGLMYATLLHIPFSTTHGLNHFFA*(+)
MQLCSIFLSVPPMASTISLHNFIGGDGGANRCGCSPSIYEKSTWKSLPSSCRRRLSRCLSPIPS
MYVMTL*(+)
MKPSSVDQKLIQNILKYPPTRTLNVDEKQLLWKFRFYLTSEKKALVKFLLSVEWSDIQEAKQAV
ALIPRWESIDVADALGLLSPVFQNEEVRAYAVGVFERASDEELQCYLLQLVQGLRFERSDRSRL
AHFLVNRALSNYELASFLRWYLVVELHDPSHARRYLCTYEMLEDAIMRSVHKEENGFQVWQSLI
EQAELTAQLRSIMKELSNVKHDAQTKGRILEQLFSGIFSELKNFSEPIPSPLTPTVLLDGIVPE
ESLVFKSANYPLCIAFSTVNGGTSKMIFKKGDNLRKDQLVIQIISLMDRLLKSDNLDLHLTPYQ
VLATGLEEGLVEFIPSISVAKIIQKTGSIESYLQKCNPDEDGPFGITAQCLETFIKSCAGYSVI
TYILGIGDRHLDNLLLQDDGRLFHVDFSYMLGEQPHRFAPPSPPMKLCKEMVEAMGGTERNMEQ
SCIHQSLHP*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017