Detail information of Solyc01g086980.2_circ_g.6


General Information
CircRNA Name Solyc01g086980.2_circ_g.6
ID in PlantcircBase sly_circ_000244
Alias 1:73662287|73664083
Organism Solanum lycopersicum
Position chr1: 81901487-81903283  JBrowse»
Reference genome SL2.50.38
Type   e-circRNA
Identification method CIRI
Parent gene Solyc01g086980.2
Parent gene annotation protein_coding
Parent gene strand +
Alternative splicing Solyc01g086980.2_circ_g.1 Solyc01g086980.2_circ_g.2 Solyc01g086980.2_circ_g.3 Solyc01g086980.2_circ_g.4 Solyc01g086980.2_circ_g.5
Support reads 6
Tissues fruit
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Solyc01g086980.2.1:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACATAACGACAGGTCAGCTTATGTAGAGTTCATGAGAAAAGGATCTGCAGAGAATGCTTTATCT
CTTGATGGAACATCATTCATGTCACGCATTCTGAAGagggaaagcagtagtcaaacaacagttg
ctgctactcggaggttgctgcaatttgcagtaagagatgccgtggctactaataggacatccag
ttccactc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1116
Transcript exons: 81901487-81901766,81901845-81902365,81902456-81902513,81
902848-81902909,81903009-81903115,81903196-81903283
AGGGAAAGCAGTAGTCAAACAACAGTTGCTGCTACTCGGAGGTTGCTGCAATTTGCAGTAAGAG
ATGCCGTGGCTACTAATAGGACATCCAGTTCCACTCTAGCTCCCTCACCTTCACTAAAGCGTCT
TCGCTCTGTGGTCTCTACATCTGTGGAGGACTCATCCCTTCCAGAACGCCCACAGAGGATACGG
TCGGTTGCAAGAGCACCAACTGCCTTGGCCACTGCTATTAGAGCTGTTGCAGAAGCTGCAAAAG
ATGTAACAAAAGTTAGATCGTCAGCTGTTGCTGAAGATGTACAAGATCAATCTTTTGCTGATGC
AAGCGAGGCGTACTCAACTTACCTTCACAGAAGTGATTATAGTGGAAAGCATATTGGGAAATCT
ATGTTGCATGATGATGCTGTGGTTGTTTATGATTCAGCATCGGATGATGAGGCTAATCGTGGTA
GCAGTGCTGTGAATAGAAGGGCTTTTGATGCCTCTAGATCTGGTGCACCTGTTAAAAACATAGG
TGAGAATCTGCTTATAGTCGAGCATGGCATTGCTTACAATGTGGATGATATTTTGGACAAGTCA
CAGAAGGACCAGGCTCAACCTACATTTGCTCCTGGTGCTCCTCACCAGCCAATGAATATCCCGT
TAAGTGTGAATACCTGGAAATCACCTCAGTATCAGGATGCAAGACAGTCATTTGAGATAGAGAA
TCGGAGATCTGCCCAAAGCAGTGAAGGCTTGGCCGAGAAATCTGATATAATGTTGACAAAAGAG
AGCACTAATCCTATTGCAGTTACTAACGGAATTGTCAAACCATATGTGGAGACGCAGAAGGAGT
CTCAGAAGACAGGTTTTCTTAATCACGGTTTGTATTCTACTGGTGCACCTACAGAAGATGCTGA
TTCACGAACCATCTTTGTTAACAATGTTCATTTTGCTGCTACAAAGGATAGCCTTTCTCGGCAC
TTTAATAAATTTGGAGAAGTGCTTAAAGTGGTAATCCTGACTGATGCTGGAACTGGGCAACCCA
AAGGGTCAGCTTATGTAGAGTTCATGAGAAAAGGATCTGCAGAGAATGCTTTATCTCTTGATGG
AACATCATTCATGTCACGCATTCTGAAG

Genomic sequence AGGGAAAGCAGTAGTCAAACAACAGTTGCTGCTACTCGGAGGTTGCTGCAATTTGCAGTAAGAG
ATGCCGTGGCTACTAATAGGACATCCAGTTCCACTCTAGCTCCCTCACCTTCACTAAAGCGTCT
TCGCTCTGTGGTCTCTACATCTGTGGAGGACTCATCCCTTCCAGAACGCCCACAGAGGATACGG
TCGGTTGCAAGAGCACCAACTGCCTTGGCCACTGCTATTAGAGCTGTTGCAGAAGCTGCAAAAG
ATGTAACAAAAGTTAGATCGTCAGGTAATGTGTTTGATAGGCTGGGTCGTGCTGGAGATGTTCC
TGATCATTCAATCCCTTCACTGGATGAATCCAGGCAAGCTGTTGCTGAAGATGTACAAGATCAA
TCTTTTGCTGATGCAAGCGAGGCGTACTCAACTTACCTTCACAGAAGTGATTATAGTGGAAAGC
ATATTGGGAAATCTATGTTGCATGATGATGCTGTGGTTGTTTATGATTCAGCATCGGATGATGA
GGCTAATCGTGGTAGCAGTGCTGTGAATAGAAGGGCTTTTGATGCCTCTAGATCTGGTGCACCT
GTTAAAAACATAGGTGAGAATCTGCTTATAGTCGAGCATGGCATTGCTTACAATGTGGATGATA
TTTTGGACAAGTCACAGAAGGACCAGGCTCAACCTACATTTGCTCCTGGTGCTCCTCACCAGCC
AATGAATATCCCGTTAAGTGTGAATACCTGGAAATCACCTCAGTATCAGGATGCAAGACAGTCA
TTTGAGATAGAGAATCGGAGATCTGCCCAAAGCAGTGAAGGCTTGGCCGAGAAATCTGATATAA
TGTTGACAAAAGAGAGCACTAATCCTATTGCAGTTACTAACGGAATTGTATGATATCTATACAC
TGTTATGATCTCATTATGTGCTAAAATCTTTGTAGTCTCCAGAAAATACTTAAATGAATATGTT
CTTTGTTAGGTCAAACCATATGTGGAGACGCAGAAGGAGTCTCAGAAGACAGGTTTTCTTAATC
ACGGTGAGTTTGATCTTCCCTAGTTGCATGTGCTTCTACTTTCTAGGCATGATAAAAGCACTTC
GAAACTACTTCTAGATAAATAGTAAGATTAATTTGTTATAAGATTAGTTTGTTAAGGTAATATT
AGGATTAAGGTTAGGCTTTATTGCTTTCGTTATGCTTTGTCTGAGATAATCTTAACTTGTGAGG
CAAATTATTGGTCTAATCACTGGTTTAATATGTGTAGTACTCCCAGTATGCTATTCCCTAGTTA
CCTTCTTTGTTTCTTTATCTTATATCTAGGTACCTTCTTTGTTTCTTTATCTTATATCTAGGTC
ATTTTCTGGTATATTAGGTTTGTATTCTACTGGTGCACCTACAGAAGATGCTGATTCACGAACC
ATCTTTGTTAACAATGTAAGTTCTGTCAACTAACTATTGGTCTGATTTGCCAGGTATATTCTTT
GTCGCTCAATTGTTTAAAAACATTTAATTTGTCTTCATTGTTGGTGTCAGGTTCATTTTGCTGC
TACAAAGGATAGCCTTTCTCGGCACTTTAATAAATTTGGAGAAGTGCTTAAAGTGGTAATCCTG
ACTGATGCTGGAACTGGGCAACCCAAAGGGTCAGTTACTATTTTCATCACCTTTTATTAATCTT
TTGTTTGATATTCTTCAGTGCTAATCTCTAAATACATAACGACAGGTCAGCTTATGTAGAGTTC
ATGAGAAAAGGATCTGCAGAGAATGCTTTATCTCTTGATGGAACATCATTCATGTCACGCATTC
TGAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.550764133
Functional Information
Coding potential Y
Potential coding position 81901950-81903280(+)
Potential amino acid sequence MLHDDAVVVYDSASDDEANRGSSAVNRRAFDASRSGAPVKNIGENLLIVEHGIAYNVDDILDKS
QKDQAQPTFAPGAPHQPMNIPLSVNTWKSPQYQDARQSFEIENRRSAQSSEGLAEKSDIMLTKE
STNPIAVTNGIVKPYVETQKESQKTGFLNHGLYSTGAPTEDADSRTIFVNNVHFAATKDSLSRH
FNKFGEVLKVVILTDAGTGQPKGSAYVEFMRKGSAENALSLDGTSFMSRILKRESSSQTTVAAT
RRLLQFAVRDAVATNRTSSSTLAPSPSLKRLRSVVSTSVEDSSLPERPQRIRSVARAPTALATA
IRAVAEAAKDVTKVRSSAVAEDVQDQSFADASEAYSTYLHRSDYSGKHIGKSMLHDDAVVVYDS
ASDDEANRGSSAVNRRAFDASRSGAPVKNIGENLLIVEHGIAYNVDDILDKSQKDQAQPTFAPG
APHQPMNIPLSVNTWKSPQYQDARQSFEIENRRSAQSSEGLAEKSDIMLTKESTNPIAVTNGIV
KPYVETQKESQKTGFLNHGLYSTGAPTEDADSRTIFVNNVHFAATKDSLSRHFNKFGEVLKVVI
LTDAGTGQPKGSAYVEFMRKGSAENALSLDGTSFMSRILKRESSSQTTVAATRRLLQFAVRDAV
ATNRTSSSTLAPSPSLKRLRSVVSTSVEDSSLPERPQRIRSVARAPTALATAIRAVAEAAKDVT
KVRSSAVAEDVQDQSFADASEAYSTYLHRSDYSGKHIGKSMLHDDAVVVYDSASDDEANRGSSA
VNRRAFDASRSGAPVKNIGENLLIVEHGIAYNVDDILDKSQKDQAQPTFAPGAPHQPMNIPLSV
NTWKSPQYQDARQSFEIENRRSAQSSEGLAEKSDIMLTKESTNPIAVTNGIVKPYVETQKESQK
TGFLNHGLYSTGAPTEDADSRTIFVNNVHFAATKDSLSRHFNKFGEVLKVVILTDAGTGQPKGS
AYVEFMRKGSAENALSLDGTSFMSRILKRESSSQTTVAATRRLLQFAVRDAVATNRTSSSTLAP
SPSLKRLRSVVSTSVEDSSLPERPQRIRSVARAPTALATAIRAVAEAAKDVTKVRSSAVAEDVQ
DQSFADASEAYSTYLHRSDYSGKHIGKSMLHDDAVVVYDSASDDEANRGSSAVNRRAFDASRSG
APVKNIGENLLIVEHGIAYNVDDILDKSQKDQAQPTFAPGAPHQPMNIPLSVNTWKSPQYQDAR
QSFEIENRRSAQSSEGLAEKSDIMLTKESTNPIAVTNGIVKPYVETQKESQKTGFLNHGLYSTG
APTEDADSRTIFVNNVHFAATKDSLSRHFNKFGEVLKVVILTDAGTGQPKGSAYVEFMRKGSAE
NALSLDGTSFMSRILK(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Yin et al., 2018