Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Solyc01g086980.2_circ_g.6 |
| ID in PlantcircBase | sly_circ_000244 |
| Alias | 1:73662287|73664083 |
| Organism | Solanum lycopersicum |
| Position | chr1: 81901487-81903283 JBrowse» |
| Reference genome | SL2.50.38 |
| Type | e-circRNA |
| Identification method | CIRI |
| Parent gene | Solyc01g086980.2 |
| Parent gene annotation |
protein_coding |
| Parent gene strand | + |
| Alternative splicing | Solyc01g086980.2_circ_g.1 Solyc01g086980.2_circ_g.2 Solyc01g086980.2_circ_g.3 Solyc01g086980.2_circ_g.4 Solyc01g086980.2_circ_g.5 |
| Support reads | 6 |
| Tissues | fruit |
| Exon boundary | Yes-Yes |
| Splicing signals | GT-AG |
| Number of exons covered | Solyc01g086980.2.1:6 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.550764133 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
81901950-81903280(+) |
| Potential amino acid sequence |
MLHDDAVVVYDSASDDEANRGSSAVNRRAFDASRSGAPVKNIGENLLIVEHGIAYNVDDILDKS QKDQAQPTFAPGAPHQPMNIPLSVNTWKSPQYQDARQSFEIENRRSAQSSEGLAEKSDIMLTKE STNPIAVTNGIVKPYVETQKESQKTGFLNHGLYSTGAPTEDADSRTIFVNNVHFAATKDSLSRH FNKFGEVLKVVILTDAGTGQPKGSAYVEFMRKGSAENALSLDGTSFMSRILKRESSSQTTVAAT RRLLQFAVRDAVATNRTSSSTLAPSPSLKRLRSVVSTSVEDSSLPERPQRIRSVARAPTALATA IRAVAEAAKDVTKVRSSAVAEDVQDQSFADASEAYSTYLHRSDYSGKHIGKSMLHDDAVVVYDS ASDDEANRGSSAVNRRAFDASRSGAPVKNIGENLLIVEHGIAYNVDDILDKSQKDQAQPTFAPG APHQPMNIPLSVNTWKSPQYQDARQSFEIENRRSAQSSEGLAEKSDIMLTKESTNPIAVTNGIV KPYVETQKESQKTGFLNHGLYSTGAPTEDADSRTIFVNNVHFAATKDSLSRHFNKFGEVLKVVI LTDAGTGQPKGSAYVEFMRKGSAENALSLDGTSFMSRILKRESSSQTTVAATRRLLQFAVRDAV ATNRTSSSTLAPSPSLKRLRSVVSTSVEDSSLPERPQRIRSVARAPTALATAIRAVAEAAKDVT KVRSSAVAEDVQDQSFADASEAYSTYLHRSDYSGKHIGKSMLHDDAVVVYDSASDDEANRGSSA VNRRAFDASRSGAPVKNIGENLLIVEHGIAYNVDDILDKSQKDQAQPTFAPGAPHQPMNIPLSV NTWKSPQYQDARQSFEIENRRSAQSSEGLAEKSDIMLTKESTNPIAVTNGIVKPYVETQKESQK TGFLNHGLYSTGAPTEDADSRTIFVNNVHFAATKDSLSRHFNKFGEVLKVVILTDAGTGQPKGS AYVEFMRKGSAENALSLDGTSFMSRILKRESSSQTTVAATRRLLQFAVRDAVATNRTSSSTLAP SPSLKRLRSVVSTSVEDSSLPERPQRIRSVARAPTALATAIRAVAEAAKDVTKVRSSAVAEDVQ DQSFADASEAYSTYLHRSDYSGKHIGKSMLHDDAVVVYDSASDDEANRGSSAVNRRAFDASRSG APVKNIGENLLIVEHGIAYNVDDILDKSQKDQAQPTFAPGAPHQPMNIPLSVNTWKSPQYQDAR QSFEIENRRSAQSSEGLAEKSDIMLTKESTNPIAVTNGIVKPYVETQKESQKTGFLNHGLYSTG APTEDADSRTIFVNNVHFAATKDSLSRHFNKFGEVLKVVILTDAGTGQPKGSAYVEFMRKGSAE NALSLDGTSFMSRILK(+) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Yin et al., 2018 |