Detail information of Solyc01g086980.2_circ_g.2


General Information
CircRNA Name Solyc01g086980.2_circ_g.2
ID in PlantcircBase sly_circ_000240
Alias NA
Organism Solanum lycopersicum
Position chr1: 81898867-81903283  JBrowse»
Reference genome SL2.50.38
Type   ei-circRNA
Identification method CIRI; find_circ
Parent gene Solyc01g086980.2
Parent gene annotation protein_coding
Parent gene strand +
Alternative splicing Solyc01g086980.2_circ_g.1 Solyc01g086980.2_circ_g.3 Solyc01g086980.2_circ_g.4 Solyc01g086980.2_circ_g.5 Solyc01g086980.2_circ_g.6
Support reads NA
Tissues leaf
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered Solyc01g086980.2.1:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACATAACGACAGGTCAGCTTATGTAGAGTTCATGAGAAAAGGATCTGCAGAGAATGCTTTATCT
CTTGATGGAACATCATTCATGTCACGCATTCTGAAGggaatatgtcatagtcttgttaaaaaat
ggtaggcgtaaagaagaagcaagaaatgaattgaatgtttttcttggagaagacagtgtctcct
ttgttgat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGAATATGTCATAGTCTTGTTAAAAAATGGTAGGCGTAAAGAAGAAGCAAGAAATGAATTGAAT
GTTTTTCTTGGAGAAGACAGTGTCTCCTTTGTTGATTGGTAAAATAACAGCCATATTTCGCTTA
ACAGTATGTGTTCTGAGCTAAGTATTTATTTTACTATTCTGATTCTTGGTAATGCTATTTAGGC
TATGGGATCACCTGGGATCAAATATAGATCTGTATGTGCAACGAAAGGATTATGATACAGGAGG
GACAAAAACGAAACCTGCTATTGCAGAGCAGCCTGCAAAGAATGATATGCACCACCAGGACACT
GTTGCTGATAAAGAGAAATTAAATAAATCTAAAAGCCGTACTCGAAGGGAGTGGAAAGGGCTTG
TTAGCGATGGACACCCTTCTCTACGTAGTTCTTTGGCCGAAAACATTCCCGAGGAGGAAGCTCA
TCGAAAAGTTGGTCATGCAAAGCGATCCCTATCCCCTCAGCCAGAACATGTGAGAAAAAGAAGC
AGACCTGAAGAAAAGCCAAAAAAGGTTTCTAGAATCTCTATGCGTTGCTTGTTTCGAGAATCAA
AAGAATGCTACTGAGTTCTCATAATGTCATGACGGATAATTTCGTAATTGAATAATTTGAAACT
TGTCATGTTTTTAAGCTGAATGTCGTGCTGATTTTTTACTTTTTGATTATTTCCGCTCCAAAGT
TGCATGCCTGTTCTGACTCTTTCATTTAGCTAGCTCCTATGTAACTCATATTGTGGACAACCAT
TGTTAGATCTTTTACTTGTCTGTCTGGGAATAACTATACATATAGTCATGTTAGCAAGACACTA
AGTAAAAGTTTGTGGCTTTTTCTGTTTCGATATTTGGGCTCAGAAATGCTGTCTTTCCTCATTA
TGGATGGTGGAGAAGAAGGCGTTTGTACTTGAATAGAAGCTTGGGGTTCCATTTCCTACTGTAT
TTATTGATGCGAAGTAAGAAGTTGCCTTTTACTTTATGGAGAGCAGAAAATTCAGTTAAGACCC
ACCTATCCACGTGGTTTATGGAGTGATTGGTTTATTGAGCTGGTTTTGCTGTTCTATATTTGTC
ATGCTAATTCGGTCTTGGCTTCCATGGAGAAATCAGTCTGTCCCTTCATTTGTTTGACTGTTTC
TCGATTGTAACTGAAGGTGATAATGGGGGTGATTAAATTTTCTATGGATTTAATGTAAGTTGGT
ATAGATAGTGGGTATCTTGAGTTTTATTTGCAAAATTATTTTTGATATCACATACCGTTTGATG
CACATAAATTCTTGAAAGCCCTTAAGTCCGAAACTTTTCCACCCATTGATCGCTCCAGAGAAAC
ATTCCAGATTGTTGTATTTTTACAGGTTTTGAAATGTATATAGTTTATCGTAACATCTTGCCTG
GTTGTGTATTTCGTTGATCCATGGTTGATAATGCCATTTGCATAATCACTCTTCTCTAATCACT
CAAGTGCATGACCTAGTGGTCAATGAAGCGAGTGTAAACCTTGGAGACCATGATTTAAATCTAA
GCAGAGACAAAAGCCATCAAGTGAGCTCTTCCCATATGTCTAACCTTGGTAGGCATAGTTACTT
GGTACATGCGCGGGAGGGAGGTAGCAAGTACCTGGTGGAATAATGAGGTTTGCACAAGTTGGCC
CGGAGACCACCATAATAAAAAATTCTCTTTACTTCACTTTTCCCATTTGTTTTAACAAAGTTTT
AAGTTCACTTGTGTGAAGCTTTACATGACTTAGTCGTTGTTGACAATACTGATGTAGGTTACAA
ACAATAACTAACTTGTGTCCTTGCAATTTTTATTAATTGTTTCTGATGATTGGGCTGTATAAAG
GTTTGTTGGCAGCATCATTAGGGTAAAAGCTTCATTTCTAATTATTTTCGTGTCATGGTTTGTA
TTTAGAATGCCATATCGATTAGATCATGTCTCCCTTCCTCTGTGTGTGGGCTGGATTTGGAGTG
TTTTTCTGCAATCAGTTTCTCTTGTTTCTAGTATTATTTATCTTATACTTTTACCCTCCATGAT
ATTTTCTTCACTTTGGTGGGTTGTCTTCCTTCAGAAATTCATGTTGGTTGAATTCCAATGCCAA
TTAGAACAAAGTTTAAAATGAATTACCCTGTGATTTGCTTTGGTTGTATCCCACGCTACTGTCT
TTTGAAAATTTCAGGAATTTTGTTGATTTTTAGTGAGTTGGTACTTTTTACTTATTGTGGTTAG
TTAGTAGCCTTTCCAATGTTATTGTATTCACAGTGCTAACAATACTTCTTTTCAAAATCCTTAT
CTTGCTGTTCGTAGACAGACTCTATCATATGATACCATGTAATACATGGTTATGCATTATTTTT
GCTCTTTTTTTTTGTATCCGTCTGTGGCCCGCTCCTTTGGATTACTTTTTTGAACAAGGATTGA
GTAAAATAACTAGGGATTGCAAGAGGAATTGCATACAAACTGATTTCAGTTCAGTACTAGAGTA
CTTCTATATAACATCTAATTCATGAAAGCAAGAGAAAATATGATTCAAGTTATCCTTTTGGTTT
TGTATTCCAAATTACTACTTCACGTCATCAGCTTTTGATTAATTTGCTTGCTTTTGATAGAGGG
AAAGCAGTAGTCAAACAACAGTTGCTGCTACTCGGAGGTTGCTGCAATTTGCAGTAAGAGATGC
CGTGGCTACTAATAGGACATCCAGTTCCACTCTAGCTCCCTCACCTTCACTAAAGCGTCTTCGC
TCTGTGGTCTCTACATCTGTGGAGGACTCATCCCTTCCAGAACGCCCACAGAGGATACGGTCGG
TTGCAAGAGCACCAACTGCCTTGGCCACTGCTATTAGAGCTGTTGCAGAAGCTGCAAAAGATGT
AACAAAAGTTAGATCGTCAGGTAATGTGTTTGATAGGCTGGGTCGTGCTGGAGATGTTCCTGAT
CATTCAATCCCTTCACTGGATGAATCCAGGCAAGCTGTTGCTGAAGATGTACAAGATCAATCTT
TTGCTGATGCAAGCGAGGCGTACTCAACTTACCTTCACAGAAGTGATTATAGTGGAAAGCATAT
TGGGAAATCTATGTTGCATGATGATGCTGTGGTTGTTTATGATTCAGCATCGGATGATGAGGCT
AATCGTGGTAGCAGTGCTGTGAATAGAAGGGCTTTTGATGCCTCTAGATCTGGTGCACCTGTTA
AAAACATAGGTGAGAATCTGCTTATAGTCGAGCATGGCATTGCTTACAATGTGGATGATATTTT
GGACAAGTCACAGAAGGACCAGGCTCAACCTACATTTGCTCCTGGTGCTCCTCACCAGCCAATG
AATATCCCGTTAAGTGTGAATACCTGGAAATCACCTCAGTATCAGGATGCAAGACAGTCATTTG
AGATAGAGAATCGGAGATCTGCCCAAAGCAGTGAAGGCTTGGCCGAGAAATCTGATATAATGTT
GACAAAAGAGAGCACTAATCCTATTGCAGTTACTAACGGAATTGTATGATATCTATACACTGTT
ATGATCTCATTATGTGCTAAAATCTTTGTAGTCTCCAGAAAATACTTAAATGAATATGTTCTTT
GTTAGGTCAAACCATATGTGGAGACGCAGAAGGAGTCTCAGAAGACAGGTTTTCTTAATCACGG
TGAGTTTGATCTTCCCTAGTTGCATGTGCTTCTACTTTCTAGGCATGATAAAAGCACTTCGAAA
CTACTTCTAGATAAATAGTAAGATTAATTTGTTATAAGATTAGTTTGTTAAGGTAATATTAGGA
TTAAGGTTAGGCTTTATTGCTTTCGTTATGCTTTGTCTGAGATAATCTTAACTTGTGAGGCAAA
TTATTGGTCTAATCACTGGTTTAATATGTGTAGTACTCCCAGTATGCTATTCCCTAGTTACCTT
CTTTGTTTCTTTATCTTATATCTAGGTACCTTCTTTGTTTCTTTATCTTATATCTAGGTCATTT
TCTGGTATATTAGGTTTGTATTCTACTGGTGCACCTACAGAAGATGCTGATTCACGAACCATCT
TTGTTAACAATGTAAGTTCTGTCAACTAACTATTGGTCTGATTTGCCAGGTATATTCTTTGTCG
CTCAATTGTTTAAAAACATTTAATTTGTCTTCATTGTTGGTGTCAGGTTCATTTTGCTGCTACA
AAGGATAGCCTTTCTCGGCACTTTAATAAATTTGGAGAAGTGCTTAAAGTGGTAATCCTGACTG
ATGCTGGAACTGGGCAACCCAAAGGGTCAGTTACTATTTTCATCACCTTTTATTAATCTTTTGT
TTGATATTCTTCAGTGCTAATCTCTAAATACATAACGACAGGTCAGCTTATGTAGAGTTCATGA
GAAAAGGATCTGCAGAGAATGCTTTATCTCTTGATGGAACATCATTCATGTCACGCATTCTGAA
G
Conservation Information
Conserved circRNAs NA
PMCS 0.133532424
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Yang et al., 2020