Detail information of Csa4G064050_circ_g.1


General Information
CircRNA Name Csa4G064050_circ_g.1
ID in PlantcircBase csa_circ_002395
Alias Chr4:5152118_5154735
Organism Cucumis sativus
Position chrChr4: 5152118-5154735  JBrowse»
Reference genome Cucumis sativus v1.5
Type   e-circRNA
Identification method CIRI2
Parent gene Csa4G064050
Parent gene annotation NA
Parent gene strand +
Alternative splicing Csa4G064050_circ_g.2
Support reads NA
Tissues leaf,root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Csa4G064050.1:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTCTGTGAAGAAAAGAGACTATGATGAGCAATTGAGAAAGGAGGAATCGAAGACTAAAAGTGTC
TGCCAGAGGTCCCAGTCCTATGGGACTTCACAACAGggagctgcaggagttgctgttcaatatc
tgggttacactcctggactttttattgtggggctctttgctattctagtcttgtggatgtatgc
taactttt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 810
Transcript exons: 5152118-5152247,5153174-5153661,5154422-5154502,5154625-
5154735
GGAGCTGCAGGAGTTGCTGTTCAATATCTGGGTTACACTCCTGGACTTTTTATTGTGGGGCTCT
TTGCTATTCTAGTCTTGTGGATGTATGCTAACTTTTGGATTACAGGGACGTTGTTTATAGTTGG
AGGTTATTTATTCTCTCTTAATCATGCACGGTTGGTGGTCTTGATGGCAACTGTATATGCTATA
TATTGTGTCAAAGTTCGTGTTGGATGGCCGGGTGTCTTTCTCTCAATAAATCTTGCATTTCTAT
CCAATGATGCATTAAATTATTTGCTCCAATGGTGTGATAAGGCGAGTGAGAGCTCACATTTTGA
AGAGCAGAAACAATCTGAAACAGTTTCGGGAGATGAATTCTCAGGAGAGTGTGAATACTCTATT
CCTACCAGTGAGTCGGAGAAGGTTCATCCATGCAAGTCAGCCAGCCCAACTGTTGTGACATCTG
TTGTTGATAACCAAAAAGAGGCTTCTTGTAGCAAGGTGACCAAAGATCAGACTGATTCAGTTGA
TGAGATGAAAAGGATTTTGGATAGTGGGGACCATTATGAAGCGCTGGGATTTACACGTCACAAG
AAGATTGATGTCATAGTTTTAAAAAAGGAATACAGAAAAAAGGCCGTGCTTGTGCATCCTGATA
AAAATATGGGAAGTCCATTGGCGAGTGAGTCATTTAAGAAGCTTCAATGTGCATATGAGGTTCT
TTCTGACTCTGTGAAGAAAAGAGACTATGATGAGCAATTGAGAAAGGAGGAATCGAAGACTAAA
AGTGTCTGCCAGAGGTCCCAGTCCTATGGGACTTCACAACAG

Genomic sequence GGAGCTGCAGGAGTTGCTGTTCAATATCTGGGTTACACTCCTGGACTTTTTATTGTGGGGCTCT
TTGCTATTCTAGTCTTGTGGATGTATGCTAACTTTTGGATTACAGGGACGTTGTTTATAGTTGG
AGGTACAAACTTCTTTCCATAAATTGGGCTCTTTGTAATTACCAGTTTAGTCTCATATTCATTT
AGATTAGGGTCTGCCCTTGTTGATAGGGTTGAGACTCCATTTCTTTTCCCTCCCTATGATATGT
GTTACTTTTCACATTTCTCATTCTCGGTTTCCTACACAGACACATATCTTAATAGTTAATACTG
TGTTACAGAGTTGACTACTAGATCTTTTCCATGGTTGTGGTTTGCGTGTCTTCATAGTAGCCAA
TAGCCATAGTTTACTTCTATTTTTTGTGATTGAAGGTTCAATGTTCCAATCTGTGTATGGCTTT
CCACAATGCAATTATTTTTTCTGTAGTCAACGGGGTAAAAAGGAAAAAACAACCACATATATTT
CATAAATAAGTCTATTGAAGCTATTGGGGGAAGGTGAATTATGGCAACGTTTCACCATATTAGA
TGTTATATTGACTGAAAAAGTGCTATTTTGCATACAAATGTTGTCTCTGCATCTTCCAAGACTG
ATATCTTATCTGTGAATTGTCACGAGGGTGTTACAAAAGTATCAACTAATTTCTCCGTTTGTAT
GGAGTTACATGTACTAATAAAATGTCTATAGTACTGGGAAGGAAAATGTTTATGGGCATATTAT
CTCTAAAATAAATATTTTAAATTTAGAAATGACATGTAGAGAAAGATAGATGTTTCCAATACTT
TCCAATTTTACTGCACACTGCTCATGGTGGTTGCAATAAGAGATCTATATGAACTTTTTATACT
TCTGCACACCACTATTCACCCTTATGCCCACTTTAGTATCCGTTTCCCTTAAGGGTAAATTTTC
TTGATGAATCTATACTCCACTTCAATCAAATTGCTATTTGAATCTTGAAATTCTGTCAGTTGAT
TTGGGTTTTTGGTTATCCTTTCTTATTTGCAGGTTATTTATTCTCTCTTAATCATGCACGGTTG
GTGGTCTTGATGGCAACTGTATATGCTATATATTGTGTCAAAGTTCGTGTTGGATGGCCGGGTG
TCTTTCTCTCAATAAATCTTGCATTTCTATCCAATGATGCATTAAATTATTTGCTCCAATGGTG
TGATAAGGCGAGTGAGAGCTCACATTTTGAAGAGCAGAAACAATCTGAAACAGTTTCGGGAGAT
GAATTCTCAGGAGAGTGTGAATACTCTATTCCTACCAGTGAGTCGGAGAAGGTTCATCCATGCA
AGTCAGCCAGCCCAACTGTTGTGACATCTGTTGTTGATAACCAAAAAGAGGCTTCTTGTAGCAA
GGTGACCAAAGATCAGACTGATTCAGTTGATGAGATGAAAAGGATTTTGGATAGTGGGGACCAT
TATGAAGCGCTGGGATTTACACGTCACAAGAAGATTGATGTCATAGTTTTAAAAAAGGAATACA
GAAAAAAGGTGACGTGGTGTGCTCATTATTTTGGAACACAATTTCCCTTTTTCACATTTGAAAA
ATAATGGGGGTCTAATTATGTAATTTAGTCATTGGGATCACTCTCAAACACATTTTTCTTGTGA
ATTATAAAAATATATCTTGAAGGGGAACTGACTTGCAGTATGTGAATGAAACGTTACTATATTC
CTTAGATATTTTTCCTGTTAGGCATGTTCCTCAGGAAAATTCTTAAAACCATCACTATCTAGTG
GAAATTGACCTATAATTGTAACAGAATTCTTATCTATATTGAGACATATGTCAGATGTAGTAAC
ATGTTGATTTTCTAACTTAATATTTAAATATATAGTGATCTATTCGTGATTTTATGTCATGTGA
CTCATGTCTATGCTATTTCATATGAAAAGATGCTACACTTCATTTTTTGTATCATATTAACATA
TTTATATAACTCTTAATCAGTTTTGGTACATTGGTATACTGCTTTTTTTTTAAAGAACATATTT
AGGGTATGTTTTGAAATTGATCACTGTTTGGGTGAAACAATATCAAAGAAGTTAGATAAATTTG
CCTGGAAAAATTATTGTACTCCCATGGTCTCAGTCCCGGCTACATAGCTGAGAATATTATATGG
GAAAAGTAAAATGATGTCAGAGGCTAATGAAATTCCTTTCCATTTGCTCTTGATGCCAACATTC
TAGTATTAGTCACTCCTAGAATCTCTTGAGGAAAAATTGTACTAATGTTTGTCTTTTCTTTTAG
GCCGTGCTTGTGCATCCTGATAAAAATATGGGAAGTCCATTGGCGAGTGAGTCATTTAAGAAGC
TTCAATGTGCATATGAGGTAATGTTAACTTTTTTGTCTTAGCTTTCTGTTTCTTCAATCATATC
TGCCGCGAGAGTTGTGAGTGGCTTTCAACTCTATGGCCATTATCATCTCTTACTCATGTTTGCA
TGGAAAATTAGGTTCTTTCTGACTCTGTGAAGAAAAGAGACTATGATGAGCAATTGAGAAAGGA
GGAATCGAAGACTAAAAGTGTCTGCCAGAGGTCCCAGTCCTATGGGACTTCACAACAG
Conservation Information
Conserved circRNAs NA
PMCS 0.482907789
Functional Information
Coding potential Y
Potential coding position 5152203-5154732(+)
5154720-5152190(+)
Potential amino acid sequence MYANFWITGTLFIVGGYLFSLNHARLVVLMATVYAIYCVKVRVGWPGVFLSINLAFLSNDALNY
LLQWCDKASESSHFEEQKQSETVSGDEFSGECEYSIPTSESEKVHPCKSASPTVVTSVVDNQKE
ASCSKVTKDQTDSVDEMKRILDSGDHYEALGFTRHKKIDVIVLKKEYRKKAVLVHPDKNMGSPL
ASESFKKLQCAYEVLSDSVKKRDYDEQLRKEESKTKSVCQRSQSYGTSQQGAAGVAVQYLGYTP
GLFIVGLFAILVLWMYANFWITGTLFIVGGYLFSLNHARLVVLMATVYAIYCVKVRVGWPGVFL
SINLAFLSNDALNYLLQWCDKASESSHFEEQKQSETVSGDEFSGECEYSIPTSESEKVHPCKSA
SPTVVTSVVDNQKEASCSKVTKDQTDSVDEMKRILDSGDHYEALGFTRHKKIDVIVLKKEYRKK
AVLVHPDKNMGSPLASESFKKLQCAYEVLSDSVKKRDYDEQLRKEESKTKSVCQRSQSYGTSQQ
GAAGVAVQYLGYTPGLFIVGLFAILVLWMYANFWITGTLFIVGGYLFSLNHARLVVLMATVYAI
YCVKVRVGWPGVFLSINLAFLSNDALNYLLQWCDKASESSHFEEQKQSETVSGDEFSGECEYSI
PTSESEKVHPCKSASPTVVTSVVDNQKEASCSKVTKDQTDSVDEMKRILDSGDHYEALGFTRHK
KIDVIVLKKEYRKKAVLVHPDKNMGSPLASESFKKLQCAYEVLSDSVKKRDYDEQLRKEESKTK
SVCQRSQSYGTSQQGAAGVAVQYLGYTPGLFIVGLFAILVLWMYANFWITGTLFIVGGYLFSLN
HARLVVLMATVYAIYCVKVRVGWPGVFLSINLAFLSNDALNYLLQWCDKASESSHFEEQKQSET
VSGDEFSGECEYSIPTSESEKVHPCKSASPTVVTSVVDNQKEASCSKVTKDQTDSVDEMKRILD
SGDHYEALGFTRHKKIDVIVLKKEYRKKAVLVHPDKNMGSPLASESFKKLQCAYEVLSDSVKKR
DYDEQLRKEESKTKSVCQRSQSYGTSQQ
MGLHNRELQELLFNIWVTLLDFLLWGSLLF*
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description responsive to salt stress in root
Other Information
References Zhu et al., 2019