Plant Circular RNA Database

Detail information of Os05g0132500_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os05g0132500_circ_g.1
					
						ID in PlantcircBase
						osa_circ_026444
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr5: 1893045-1894617  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os05g0132500						
					
						Parent gene annotation
						
							Protein of unknown function DUF246, plant family protein. (Os05t
0132500-01);Similar to auxin-independent growth promoter protein
. (Os05t0132500-02)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os05g0132500_circ_g.2 Os05g0132500_circ_g.3 Os05g0132500_circ_g.4 Os05g0132500_circ_g.5 						
					
						Support reads
						1
					
						Tissues
						shoot
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os05t0132500-01:6
Os05t0132500-02:6

General Information
CircRNA Name	Os05g0132500_circ_g.1
ID in PlantcircBase	osa_circ_026444
Alias	NA
Organism	Oryza sativa
Position	chr5: 1893045-1894617 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ue-circRNA
Identification method	CIRCexplorer
Parent gene	Os05g0132500
Parent gene annotation	Protein of unknown function DUF246, plant family protein. (Os05t 0132500-01);Similar to auxin-independent growth promoter protein . (Os05t0132500-02)
Parent gene strand	-
Alternative splicing	Os05g0132500_circ_g.2 Os05g0132500_circ_g.3 Os05g0132500_circ_g.4 Os05g0132500_circ_g.5
Support reads	1
Tissues	shoot
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os05t0132500-01:6 Os05t0132500-02:6

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CACCAGCAGCGATAGCATCGACAGCACGATGCCAATCGCTGTGGCCAACTTGAATTTGCTCTTG
AGGAGCATCTTATTTCATTAATCTCAGCTCCAGATCctgctaactatttggttcccgagagcac
gaatttctggacggaacttcaaagcatggaaggctaccctgcatctaagcctctgaaattcctc
caaggttg

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 780
Transcript exons: 1893045-1893157,1893235-1893478,1893592-1893680,1893756-
1893823,1894189-1894273,1894437-1894617
CTGCTAACTATTTGGTTCCCGAGAGCACGAATTTCTGGACGGAACTTCAAAGCATGGAAGGCTA
CCCTGCATCTAAGCCTCTGAAATTCCTCCAAGGTTGCTGGAAGGATTGACTGGAGACATTTGCC
TCCATTAATGATTATCCCAATAACTTTTGACTTGGAAAGTTTTGGCAGGACTTCTGTCACGTAA
TATTCTGGAGTAGCCGAGTTTTTAGGTGATACTGTGGGAAATTTTATCTTTTTTCTAGCCTCCC
TGAGATCCTTTGGCAAACCACGCACAATAGCTACATCACTGGAAAGTGCGGAAATGAACTGATC
TTCATCATATAGATATGAAAAGCTCTTGAATTTTGAACTGATGCCTTTTGCACGTGTCGTTGCT
TGAATCTCAGGAATAACTAGGGTGGCATTTAAGAGCCTGGCAACGGCGACAAGATCACAGATTG
AAGATTGTATCTTCTCAAAGCCACCATAGATCTTTGCATAAATAAAACCATTATGATAATCCAG
AGCAGGGTAGATTTTTCTAGGTTTCGCATAAGGGTGTAAATGATCAAGTGTACTCAACGAACCC
CACAATCTCCGGGGTCGAGGCCTTGGTCCAAACGGAAGGACATCATCCATATGCAGACTATATC
TTGTGATTCCCCCAGCAGAATAATTCGCAAGGAAAAGGTGCACCAGCAGCGATAGCATCGACAG
CACGATGCCAATCGCTGTGGCCAACTTGAATTTGCTCTTGAGGAGCATCTTATTTCATTAATCT
CAGCTCCAGATC
						
					

						Genomic sequence
						
							CTGCTAACTATTTGGTTCCCGAGAGCACGAATTTCTGGACGGAACTTCAAAGCATGGAAGGCTA
CCCTGCATCTAAGCCTCTGAAATTCCTCCAAGGTTGCTGGAAGGATTGACTGCAGATGTAAAAG
TTCTAAGTCCACAATTAGCCGCAGAAAGAAACAAAATAGTGTTAGTGCGGCCTGGAAGATACCT
GGAGACATTTGCCTCCATTAATGATTATCCCAATAACTTTTGACTTGGAAAGTTTTGGCAGGAC
TTCTGTCACGTAATATTCTGGAGTAGCCGAGTTTTTAGGTGATACTGTGGGAAATTTTATCTTT
TTTCTAGCCTCCCTGAGATCCTTTGGCAAACCACGCACAATAGCTACATCACTGGAAAGTGCGG
AAATGAACTGATCTTCATCATATAGATATGAAAAGCTCTTGAATTTTGAACTGCAAGATCAAAA
CAAGAGAAAAAAAAAAGAAAAACTATAGTTAGAGGTCAAGCCTAAAAGGGACAAAGAAATAAAT
GTATCACAAAAACAAATAACAAAGGAGACAGGGACCTGATGCCTTTTGCACGTGTCGTTGCTTG
AATCTCAGGAATAACTAGGGTGGCATTTAAGAGCCTGGCAACGGCGACAAGATCACAGATCTAA
CAAAAGGAAATATGTCATGGACCTACAGGCTAAAGAACACATGAATGTGAACTTTACACAAGGA
AACTTACTGAAGATTGTATCTTCTCAAAGCCACCATAGATCTTTGCATAAATAAAACCATTATG
ATAATCCAGAGCTGCAAGGCAAGTCAAAAAATTTTTTGATCAAGGTTTGAGTTCCAGGTTTTAC
AAGTATGCAGTGACATTGAAAACAGATCAGTCAGCATATTTATCCACAACCATATGCAGGAAAA
GGAAAATCATGGAATTAATGTCTAAGGTCCAACCACACAGCACTGGAACACTCGGGATCGATCA
TTATAAATGAGCCGCAAAAACAAAACAATAGAATGTAAAATAAAAGTTTGGTCACTCATTCAGA
ATCAGAATAAAGGTAGGCTGCTCAAATTAAGCTATTGAACTAACTGAATAAATAGATTTGGAAA
CATAAGATGAAAAAAAATATGCAAGCATGGTAAGCAAAGGATGGATGCAAAATTACCAGGGTAG
ATTTTTCTAGGTTTCGCATAAGGGTGTAAATGATCAAGTGTACTCAACGAACCCCACAATCTCC
GGGGTCGAGGCCTCTGCGTAAATCATGAAGCAATAAAAAAAGGATATCATCAATTTGTATTCAA
CTGATGCTTGAAACTCATGGTCTCTCAAAGTGTAATTCGCCGTCAAACTTATACACTGAAGATA
CTGAATGTAACAATTGATAGTTGAACGTAGTCACAACTTATGACTTACTGGTCCAAACGGAAGG
ACATCATCCATATGCAGACTATATCTTGTGATTCCCCCAGCAGAATAATTCGCAAGGAAAAGGT
GCACCAGCAGCGATAGCATCGACAGCACGATGCCAATCGCTGTGGCCAACTTGAATTTGCTCTT
GAGGAGCATCTTATTTCATTAATCTCAGCTCCAGATC
						
					

			
		

Sequences
Splice junction sequence	CACCAGCAGCGATAGCATCGACAGCACGATGCCAATCGCTGTGGCCAACTTGAATTTGCTCTTG AGGAGCATCTTATTTCATTAATCTCAGCTCCAGATCctgctaactatttggttcccgagagcac gaatttctggacggaacttcaaagcatggaaggctaccctgcatctaagcctctgaaattcctc caaggttg
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 780 Transcript exons: 1893045-1893157,1893235-1893478,1893592-1893680,1893756- 1893823,1894189-1894273,1894437-1894617 CTGCTAACTATTTGGTTCCCGAGAGCACGAATTTCTGGACGGAACTTCAAAGCATGGAAGGCTA CCCTGCATCTAAGCCTCTGAAATTCCTCCAAGGTTGCTGGAAGGATTGACTGGAGACATTTGCC TCCATTAATGATTATCCCAATAACTTTTGACTTGGAAAGTTTTGGCAGGACTTCTGTCACGTAA TATTCTGGAGTAGCCGAGTTTTTAGGTGATACTGTGGGAAATTTTATCTTTTTTCTAGCCTCCC TGAGATCCTTTGGCAAACCACGCACAATAGCTACATCACTGGAAAGTGCGGAAATGAACTGATC TTCATCATATAGATATGAAAAGCTCTTGAATTTTGAACTGATGCCTTTTGCACGTGTCGTTGCT TGAATCTCAGGAATAACTAGGGTGGCATTTAAGAGCCTGGCAACGGCGACAAGATCACAGATTG AAGATTGTATCTTCTCAAAGCCACCATAGATCTTTGCATAAATAAAACCATTATGATAATCCAG AGCAGGGTAGATTTTTCTAGGTTTCGCATAAGGGTGTAAATGATCAAGTGTACTCAACGAACCC CACAATCTCCGGGGTCGAGGCCTTGGTCCAAACGGAAGGACATCATCCATATGCAGACTATATC TTGTGATTCCCCCAGCAGAATAATTCGCAAGGAAAAGGTGCACCAGCAGCGATAGCATCGACAG CACGATGCCAATCGCTGTGGCCAACTTGAATTTGCTCTTGAGGAGCATCTTATTTCATTAATCT CAGCTCCAGATC
Genomic sequence	CTGCTAACTATTTGGTTCCCGAGAGCACGAATTTCTGGACGGAACTTCAAAGCATGGAAGGCTA CCCTGCATCTAAGCCTCTGAAATTCCTCCAAGGTTGCTGGAAGGATTGACTGCAGATGTAAAAG TTCTAAGTCCACAATTAGCCGCAGAAAGAAACAAAATAGTGTTAGTGCGGCCTGGAAGATACCT GGAGACATTTGCCTCCATTAATGATTATCCCAATAACTTTTGACTTGGAAAGTTTTGGCAGGAC TTCTGTCACGTAATATTCTGGAGTAGCCGAGTTTTTAGGTGATACTGTGGGAAATTTTATCTTT TTTCTAGCCTCCCTGAGATCCTTTGGCAAACCACGCACAATAGCTACATCACTGGAAAGTGCGG AAATGAACTGATCTTCATCATATAGATATGAAAAGCTCTTGAATTTTGAACTGCAAGATCAAAA CAAGAGAAAAAAAAAAGAAAAACTATAGTTAGAGGTCAAGCCTAAAAGGGACAAAGAAATAAAT GTATCACAAAAACAAATAACAAAGGAGACAGGGACCTGATGCCTTTTGCACGTGTCGTTGCTTG AATCTCAGGAATAACTAGGGTGGCATTTAAGAGCCTGGCAACGGCGACAAGATCACAGATCTAA CAAAAGGAAATATGTCATGGACCTACAGGCTAAAGAACACATGAATGTGAACTTTACACAAGGA AACTTACTGAAGATTGTATCTTCTCAAAGCCACCATAGATCTTTGCATAAATAAAACCATTATG ATAATCCAGAGCTGCAAGGCAAGTCAAAAAATTTTTTGATCAAGGTTTGAGTTCCAGGTTTTAC AAGTATGCAGTGACATTGAAAACAGATCAGTCAGCATATTTATCCACAACCATATGCAGGAAAA GGAAAATCATGGAATTAATGTCTAAGGTCCAACCACACAGCACTGGAACACTCGGGATCGATCA TTATAAATGAGCCGCAAAAACAAAACAATAGAATGTAAAATAAAAGTTTGGTCACTCATTCAGA ATCAGAATAAAGGTAGGCTGCTCAAATTAAGCTATTGAACTAACTGAATAAATAGATTTGGAAA CATAAGATGAAAAAAAATATGCAAGCATGGTAAGCAAAGGATGGATGCAAAATTACCAGGGTAG ATTTTTCTAGGTTTCGCATAAGGGTGTAAATGATCAAGTGTACTCAACGAACCCCACAATCTCC GGGGTCGAGGCCTCTGCGTAAATCATGAAGCAATAAAAAAAGGATATCATCAATTTGTATTCAA CTGATGCTTGAAACTCATGGTCTCTCAAAGTGTAATTCGCCGTCAAACTTATACACTGAAGATA CTGAATGTAACAATTGATAGTTGAACGTAGTCACAACTTATGACTTACTGGTCCAAACGGAAGG ACATCATCCATATGCAGACTATATCTTGTGATTCCCCCAGCAGAATAATTCGCAAGGAAAAGGT GCACCAGCAGCGATAGCATCGACAGCACGATGCCAATCGCTGTGGCCAACTTGAATTTGCTCTT GAGGAGCATCTTATTTCATTAATCTCAGCTCCAGATC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.298053581

Conservation Information
Conserved circRNAs	NA
PMCS	0.298053581

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							1894591-1894607(-)
						
						Potential amino acid sequence
						
							MLLKSKFKLATAIGIVLSMLSLLVHLFLANYSAGGITRYSLHMDDVLPFGPRPRPRRLWGSLST
LDHLHPYAKPRKIYPALDYHNGFIYAKIYGGFEKIQSSICDLVAVARLLNATLVIPEIQATTRA
KGISSKFKSFSYLYDEDQFISALSSDVAIVRGLPKDLREARKKIKFPTVSPKNSATPEYYVTEV
LPKLSKSKVIGIIINGGKCLQSILPATLEEFQRLRCRVAFHALKFRPEIRALGNQIVSRIWS*(
-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	1894591-1894607(-)
Potential amino acid sequence	MLLKSKFKLATAIGIVLSMLSLLVHLFLANYSAGGITRYSLHMDDVLPFGPRPRPRRLWGSLST LDHLHPYAKPRKIYPALDYHNGFIYAKIYGGFEKIQSSICDLVAVARLLNATLVIPEIQATTRA KGISSKFKSFSYLYDEDQFISALSSDVAIVRGLPKDLREARKKIKFPTVSPKNSATPEYYVTEV LPKLSKSKVIGIIINGGKCLQSILPATLEEFQRLRCRVAFHALKFRPEIRALGNQIVSRIWS*( -)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os05g0132500_circ_g.1

Address

Any questions?

Supported by