Detail information of Zm00001d033155_circ_g.7


General Information
CircRNA Name Zm00001d033155_circ_g.7
ID in PlantcircBase zma_circ_006858
Alias Zm01circ00157, zma_circ_0000486
Organism Zea mays
Position chr1: 252374919-252378144  JBrowse»
Reference genome AGPv4.38
Type   e-circRNA
Identification method CIRI2, find_circ
Parent gene Zm00001d033155
Parent gene annotation DUF21 domain-containing protein chloroplastic
Parent gene strand -
Alternative splicing Zm00001d033155_circ_g.1 Zm00001d033155_circ_g.2 Zm00001d033155_circ_g.3 Zm00001d033155_circ_g.4 Zm00001d033155_circ_g.5 Zm00001d033155_circ_g.6 Zm00001d033155_circ_g.8
Support reads NA
Tissues leaf, endosperm, root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Zm00001d033155_T003:5
Zm00001d033155_T001:5
Zm00001d033155_T002:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAAGTGTTGCGATAGCATCAATTGCTACTACGTCCACCAAAGGCGTCATTACTTCCCTCACATG
TGTATCTTTAATTTCCAGGACATTCTCGATCATATCcttggaatcattctcatcgaagatttca
ccaactatttcttccactacgtcttctagtgttacaatctgcattttttgacaaaattcagcaa
gtaattcc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 441
Transcript exons: 252374919-252374984,252377394-252377485,252377679-252377
742,252377852-252377930,252378005-252378144
CTTGGAATCATTCTCATCGAAGATTTCACCAACTATTTCTTCCACTACGTCTTCTAGTGTTACA
ATACCAATAGTTCCACCATATTCATTGAGGACCACTGCCATATGAACCTGCCTGATCCGGAACT
CTCTTAATAGGTTCCAAACAGACATTGAATCTGGAACAAAGTATGTAGGCATATGTGCGATTTC
CTTCACAGTGATTGCATTCAATTTCTCAACCTCTTCAACATATTCAAGCATGTCCATTGCATAA
GCAATTCCAACAATATTATCTATGCGCTCCTCAAATACAGGAACTCTAGAGTACTGATGAGTTT
CCCACAAGTTTTTGAAATCAATAAGTGTTGCGATAGCATCAATTGCTACTACGTCCACCAAAGG
CGTCATTACTTCCCTCACATGTGTATCTTTAATTTCCAGGACATTCTCGATCATATC

Genomic sequence CTTGGAATCATTCTCATCGAAGATTTCACCAACTATTTCTTCCACTACGTCTTCTAGTGTTACA
ATCTGCATTTTTTGACAAAATTCAGCAAGTAATTCCTAGTGTCCATGCAGTGATAAACATACGA
AATTACAAACTGTGCATAAACATTTTCTAAACGCAATAGAACTTAGTGCTGCAAGTAGTTGGAT
AGATATCACTACATGAAAGGGTAATTGCTCGATGGCTATACTTCCAGGGGTCATGTGTTAGACA
AAGGAGAACATGAGTAGTAGCTTAAATATGGAGTTGTCCAATCATTTGCATCAGTCATGAAAAA
AACAGCTTAAATAATTATCCTTTCAGCAGCAAATGTAATCAAAACATGTTCATTGTGTTAAGGC
CCATTAAGGCCCATATTATTGTCTGCCTATATATATGCTACAGTACCCACGTGGGTAATCATCT
CGCCTAATCAAGGTTAGTCACATGGTATCAGAGGAGGTTAGGGTTAGGGTTTAGTCTAAATCCG
GCCCTGATCCACTTTTTTGGGCGCCGTCGCGCCGTCGCTGTGCTGCCAATCGCGGCCAGCATCC
TGTCCGCCATCGCTGTCCCCGTCCTCGATCCGCCGCCAGGAGATCCGGCCACCTTCCCTGTTCG
CCGCCAGGGCGCGCGGCCTTCCGCCGCCTGGATCCGCCGCCTGGTTGTCCGCCGCCAGGGGTGT
TCGTCGCCAGGATCCGCCGCCGCCAGGGCGGATCTCCCCCATCTCAGCGCCGTCCGCCGCCTGG
ATCCGCCGCCTGGCTGTCCGCGCCAGGGGTGTTCGCCGCCGCCAGGGCTGTCCGCGCCAGGGGT
GTCCGTCGTCCGCGCTAATCCAAGGGGCAGGGCGCCTTCCACTGCCAGGGGCAGTGCGCCAGGG
GCAGGGCTCCCTCTGCTGCCAGGGGCAGTGCGCCAGGGGCAGGGCTGCTCCCTCTGCTGCCAGG
GGCAGTGTGCCAGGGGCAGGGCTCCCTCTGCTGCCAGGGGCAGTGCGCCAGGGGCGGATTTCTA
TCTCTGCCTGCGCCGTTCTACTGCCTGTGACAAGTTCCGCGGATCCCCGTCTGCTGTCGTTGCA
CGCAGGGCTGCAGATCCGCTGCTCCCACCGGAAATCTGCACCGACCGCGGATCTGCGACGTCGC
TGCTCCTAGGTCTTTGGTCTCAGGTTTCCTATTCTCCTTGATTTTGATTCAATTCAATATGACG
ACAAATGCTATTGTGGTCAATATCACTCTTGATGGTCAAAATTATCCGGAGTGGGCTTTCTGTG
TTGAGACTGCACTTCGGGGACATGGATTACTCTTTCATTTGACTGATGCGGCACCCGTTCTTGC
TGATGATCGTCGCAATGCTGCTGATATCAAAACATGGCAGCTTAATGATGGTAAAGTGATGGCT
GCTATGGTGAACAGCGTCAAACCGTCTATGATTATGAGTTTATCTAAATTCAAAACTGCTAAAG
CCATCTGGTCTCATTTGAAGGAGCGTTTTGTTCAGGACAGTGGTGCTTTATTACACACCCTCAT
GCAGCAGACACATGTTATTGAGCAAAATGATATGAGTATTGATGAGTACTACTCAGCCTTTGAT
CGCCTGATGAGTGCTTTGACATCAATGGTGCCTGCTTGTACTACTGATCCATGTCCGGCTCATA
AGTTTATTGAGAAGTTCTTCACTTACAGATTTGTTATGGGTGTTCGGGCTGAGTTTGATTCCCT
TCGTGCTCGTTTACTTCAGGGCTCTGACACTCTCACTATGGCTAAGGCGTTGTCTAATTTACTT
GCTGAAGAGACTCGTCTTAATTCTCTGTCCTCTACTGGTGGTAATCCTCACAGTGTGTTGGCTG
CTGCCCAGAAACCTAAGAATATTTTTAAGCCTTGTGATCATTGTGGCAAGACCAATCATCGATC
TGAGCTTTGTTTTGTCAAGTTTCCTGAGAAGTTGACTGACTCATCAACTACTTCTGAAAACCGA
AACTGTTGACATTGCTGCAGTCATGTAAGCTACGTAGCATGTGTCTGGCCTCTATAAGGAGCGC
TTTGTATTGGGGCTCTTCTTGGTGCCCCACCCATTTTTTCTCTTAATATAATGGGACGCAGTTC
TCCTGCGCTTTTCAAGAAAAAAACGTAGCAAGATCACTTGAAGCATCGCATCACAGGCTTGCGC
TAAAAACATGGCCATTGGTGGAATAAAAGCCAGTAGTGATGCCAATAAATGGTCATCGGAATGT
CACCATGTACTGACTAGCATTCATCAATGGTTAGCCGAACTAACTAGCATGCTTGGAAACTAAA
AATTGATTCGAGTAAATAATGTTGAATCTCATGGTGTGCCATAAGTCAAAATGGACTCAATCGA
GTAACTATCCTTGGATGAAATACATAACTAGAATCATTAACAAGTACTGAACTGTGTCCAGTTT
GTAAACACATAAAGTATAGAAATTGGGTTTCATTGGGACATACACCAATAGTTCCACCATATTC
ATTGAGGACCACTGCCATATGAACCTGCCTGATCCGGAACTCTCTTAATAGGTTCCAAACAGAC
ATTGAATCTGCCAGATGAAACAGATCATATCATATTTTACATCTATGACATGTAGATGGGAGAA
AACATGAGGGAGAAATGATTAATTGTGGCAGCAGCTATAACAGCATTGGAGAAACATCCAGTCT
TATAACTATTGACAGATGCCTTTTTTTGAGTTTATAATGTGACTTGTTTCCACCAATGTTACTA
GCAATTACCTGGAACAAAGTATGTAGGCATATGTGCGATTTCCTTCACAGTGATTGCATTCAAT
TTCTCAACCTTCAAAAGAAAAATACATCTTTTACTTTCCCATTAGAGAAGCATCATGTGGAGCA
AATAAGAATCACTGTGATTAAATTTTACATTAAATGGTAAACAAGAGACGGACCTCTTCAACAT
ATTCAAGCATGTCCATTGCATAAGCAATTCCAACAATATTATCTATGCGCTCCTCAAATACAGG
AACTCTGGAAATAATAAATAGCAGCAGATGTGAACAATAAGACTTGAAAATACATGCGACAATG
ATAGTTGACAATACCTAGAGTACTGATGAGTTTCCCACAAGTTTTTGAAATCAATAAGTGTTGC
GATAGCATCAATTGCTACTACGTCCACCAAAGGCGTCATTACTTCCCTCACATGTGTATCTTTA
ATTTCCAGGACATTCTCGATCATATC
Conservation Information
Conserved circRNAs NA
PMCS 0.130654528
Functional Information
Coding potential Y
Potential coding position 252377702-252374972(+)
252378143-252374921(-)
Potential amino acid sequence MCDFLHSDCIQFLNLFNIFKHVHCISNSNNIIYALLKYRNSRVLMSFPQVFEINKCCDSINCYY
VHQRRHYFPHMCIFNFQDILDHILGIILIEDFTNYFFHYVF*(+)
MIENVLEIKDTHVREVMTPLVDVVAIDAIATLIDFKNLWETHQYSRVPVFEERIDNIVGIAYAM
DMLEYVEEVEKLNAITVKEIAHMPTYFVPDSMSVWNLLREFRIRQVHMAVVLNEYGGTIGIVTL
EDVVEEIVGEIFDENDSKDMIENVLEIKDTHVREVMTPLVDVVAIDAIATLIDFKNLWETHQYS
RVPVFEERIDNIVGIAYAMDMLEYVEEVEKLNAITVKEIAHMPTYFVPDSMSVWNLLREFRIRQ
VHMAVVLNEYGGTIGIVTLEDVVEEIVGEIFDENDSKDMIENVLEIKDTHVREVMTPLVDVVAI
DAIATLIDFKNLWETHQYSRVPVFEERIDNIVGIAYAMDMLEYVEEVEKLNAITVKEIAHMPTY
FVPDSMSVWNLLREFRIRQVHMAVVLNEYGGTIGIVTLEDVVEEIVGEIFDENDSKDMIENVLE
IKDTHVREVMTPLVDVVAIDAIATLIDFKNLWETHQYSRVPVFEERIDNIVGIAYAMDMLEYVE
EVEKLNAITVKEIAHMPTYFVPDSMSVWNLLREFRIRQVHMAVVLNEYGGTIGIVTLEDVVEEI
VGEIFDENDSK(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Han et al., 2020; Ma et al., 2021b