Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d045109_circ_g.3 |
ID in PlantcircBase | zma_circ_009850 |
Alias | zma_circ_0003075 |
Organism | Zea mays |
Position | chr9: 13091928-13092498 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d045109 |
Parent gene annotation |
Putative homeodomain-like transcription factor superfamily prote in |
Parent gene strand | + |
Alternative splicing | Zm00001d045109_circ_g.1 Zm00001d045109_circ_g.2 Zm00001d045109_circ_g.4 |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d045109_T015:3 Zm00001d045109_T010:3 Zm00001d045109_T005:3 Zm00001d045109_T003:3 Zm00001d045109_T032:3 Zm00001d045109_T008:3 Zm00001d045109_T023:3 Zm00001d045109_T024:3 Zm00001d045109_T004:3 Zm00001d045109_T017:3 Zm00001d045109_T018:3 Zm00001d045109_T007:3 Zm00001d045109_T028:3 Zm00001d045109_T009:3 Zm00001d045109_T025:3 Zm00001d045109_T031:3 Zm00001d045109_T012:3 Zm00001d045109_T011:3 Zm00001d045109_T001:3 Zm00001d045109_T033:3 Zm00001d045109_T002:3 Zm00001d045109_T022:3 Zm00001d045109_T016:3 Zm00001d045109_T026:3 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.218203824 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
13092004-13091937(+) 13092019-13092282(-) |
Potential amino acid sequence |
MLKPHLLRRFKKDVMKELPPKKELILRVELTRKQKEYYKAILTKNYEVLARRNGGHTSLINVVM ELRKLCCHGFMIDEPDLEPANPEEGLSLGV*(+) MWLQHSMKLLNLLVLVYILELFLEISYTPKLKPSSGLAGSRSGSSIMNPWQQSLRNSITTFIRD VCPPLRRANTS*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |