Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d045109_circ_g.1 |
ID in PlantcircBase | zma_circ_009848 |
Alias | zma_circ_0003073 |
Organism | Zea mays |
Position | chr9: 13086326-13092498 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d045109 |
Parent gene annotation |
Putative homeodomain-like transcription factor superfamily prote in |
Parent gene strand | + |
Alternative splicing | Zm00001d045109_circ_g.2 Zm00001d045109_circ_g.3 Zm00001d045109_circ_g.4 |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d045109_T012:12 Zm00001d045109_T024:12 Zm00001d045109_T017:12 Zm00001d045109_T031:8 Zm00001d045109_T016:12 Zm00001d045109_T002:12 Zm00001d045109_T010:12 Zm00001d045109_T025:12 Zm00001d045109_T008:12 Zm00001d045109_T003:12 Zm00001d045109_T005:12 Zm00001d045109_T001:12 Zm00001d045109_T011:12 Zm00001d045109_T018:12 Zm00001d045109_T023:11 Zm00001d045109_T022:12 Zm00001d045109_T028:8 Zm00001d045109_T004:12 Zm00001d045109_T032:7 Zm00001d045109_T009:12 Zm00001d045109_T007:12 Zm00001d045109_T033:3 Zm00001d045109_T026:9 Zm00001d045109_T015:12 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.101985979 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
13086555-13086365(+) 13086391-13092496(-) |
Potential amino acid sequence |
MERILDIEVLEAPREDSSSTEPRSKKMERYLIKWKGLSYIHCSWVSEKEYSEAANIHPRLRTRL NNFRRQKEAMKIEAERSGEDIVAIRPEWTTVDRILASRKNLVGDREYYVKWNELTYEECTWENE SDITVFQPEIERFNEIQFRRKKSGDKGKATREPRQFKESPTFLSGGTLHPYQLEGLNFLRYSWF HNKRVILGDEMGLGKTIQSIAFLASLFEDKFGPHLVVAPLSTLRNWEREFATWAPQMNVVMYFG AAASRDIIRKYEFYYPKEKLKKLKKKKSSPSNEDKKQSRIRFDVLLTSYEMINMDSSILKNIEW ECLVVDEGHRLKNKDSKLFGQLKDYNTKHRVLLTGTPVQNNLDELFMLMHFLEGESFGSITDLQ EEFKDINQDKQIEKLHGMLKPHLLRRFKKDVMKELPPKKELILRVELTRKQKEYYKAILTKNYE VLARRNGGHTSLINVVMELRKLCCHGFMIDEPDLEPANPEEGLRKKKLASAVEKVII*(+) MYMLNKRLDYHFFHSAGKLLLS*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |