Detail information of Os06g0106800_circ_g.4


General Information
CircRNA Name Os06g0106800_circ_g.4
ID in PlantcircBase osa_circ_029333
Alias Os_ciR10711
Organism Oryza sativa
Position chr6: 440163-440267  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method find_circ
Parent gene Os06g0106800
Parent gene annotation Similar to glycoside hydrolase, family 28. (Os06t0106800-01);Sim
ilar to glycoside hydrolase, family 28. (Os06t0106800-02)
Parent gene strand -
Alternative splicing Os06g0106800_circ_g.2 Os06g0106800_circ_g.3
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Os06t0106800-02:1
Os06t0106800-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCCCCTGCCCGTCGATCGTCCCGTTCGCGCCGGTGATCACCACGTCCGTCAGgtacccacgcgt
gtacttgagcttgttcgaatggaacttggaccaccacatcg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTACCCACGCGTGTACTTGAGCTTGTTCGAATGGAACTTGGACCACCACATCGCCCCCTGCCCG
TCGATCGTCCCGTTCGCGCCGGTGATCACCACGTCCGTCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.326459286
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015