Detail information of Os06g0106800_circ_g.2


General Information
CircRNA Name Os06g0106800_circ_g.2
ID in PlantcircBase osa_circ_042229
Alias NA
Organism Oryza sativa
Position chr6: 439878-440286  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRI-long
Parent gene Os06g0106800
Parent gene annotation Similar to glycoside hydrolase, family 28. (Os06t0106800-01);Sim
ilar to glycoside hydrolase, family 28. (Os06t0106800-02)
Parent gene strand -
Alternative splicing Os06g0106800_circ_g.3 Os06g0106800_circ_g.4
Support reads NA
Tissues root
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered Os06t0106800-01:1
Os06t0106800-02:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTTCGAATGGAACTTGGACCACCACATCGCCCCCTGCCCGTCGATCGTCCCGTTCGCGCCGGTG
ATCACCACGTCCGTCAGGTTGGACCCGCCGATCAGGcacgatgtgctggctgggcatcccgtac
gcgatcccgtactcgtcccacccggacttgatcgccacgcagtcgtcgccggacacgatgtagc
agtcctcg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 409
Transcript exons: 439878-440286
CACGATGTGCTGGCTGGGCATCCCGTACGCGATCCCGTACTCGTCCCACCCGGACTTGATCGCC
ACGCAGTCGTCGCCGGACACGATGTAGCAGTCCTCGATGCGGACGTGGGAGCACGAGTCCGGGT
TGATGCCGTCGGTGTTGGGCGAGTGCGTCGGTGCCAGGATCGTCACCCCCTGCACCACGATGTT
GCTGCTGTACACCGGGTGGATGTTCCACGCCGGCGAGTTCACCAGCGTCACGTTCGATATCACC
ACCGTGTCCGAGTGCATCACCTCGATCAGGTACCCACGCGTGTACTTGAGCTTGTTCGAATGGA
ACTTGGACCACCACATCGCCCCCTGCCCGTCGATCGTCCCGTTCGCGCCGGTGATCACCACGTC
CGTCAGGTTGGACCCGCCGATCAGG

Genomic sequence CACGATGTGCTGGCTGGGCATCCCGTACGCGATCCCGTACTCGTCCCACCCGGACTTGATCGCC
ACGCAGTCGTCGCCGGACACGATGTAGCAGTCCTCGATGCGGACGTGGGAGCACGAGTCCGGGT
TGATGCCGTCGGTGTTGGGCGAGTGCGTCGGTGCCAGGATCGTCACCCCCTGCACCACGATGTT
GCTGCTGTACACCGGGTGGATGTTCCACGCCGGCGAGTTCACCAGCGTCACGTTCGATATCACC
ACCGTGTCCGAGTGCATCACCTCGATCAGGTACCCACGCGTGTACTTGAGCTTGTTCGAATGGA
ACTTGGACCACCACATCGCCCCCTGCCCGTCGATCGTCCCGTTCGCGCCGGTGATCACCACGTC
CGTCAGGTTGGACCCGCCGATCAGG
Conservation Information
Conserved circRNAs NA
PMCS 0.293380603
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study