Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os06g0367100_circ_g.1 |
ID in PlantcircBase | osa_circ_030801 |
Alias | Os_ciR3424 |
Organism | Oryza sativa |
Position | chr6: 15339696-15342783 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, find_circ |
Parent gene | Os06g0367100 |
Parent gene annotation |
Glycoside hydrolase, subgroup, catalytic core domain containing protein. (Os06t0367100-01);Similar to starch branching enzyme II I. (Os06t0367100-02) |
Parent gene strand | + |
Alternative splicing | Os06g0367100_circ_g.2 Os06g0367100_circ_g.3 |
Support reads | 3/1 |
Tissues | root/shoot |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os06t0367100-01:5 |
Conservation Information | |
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Conserved circRNAs | osi_circ_008296 osi_circ_019045 |
PMCS | 0.457136626 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
15342716-15339713(+) 15339927-15342780(+) |
Potential amino acid sequence |
MHQQMNWLAYPSLMVLMIVTSTAVLVIVL*(+) MNEEYWEPGEIKSQKSRLEVVAKLYEQMFGPNGPQTEEELGDIPDAETRYNEWKALQKDDSASS LPCYDIIDNGQEFDIFNVATDRVSFEKFQGKSPPLAYWVEMRKGRKAWLEKYVPAISHKDKYRV YFNTPDGGLERIPAWATYVLPDAEGKQSYAVHWDPPPEEIYKWRFERPKVKGSLRIYECHVGIS GSEQKISSFQEFTSNVLPHIKDAGYNAIQLIGIVEHKDYSSVGYKVTNYFSVSSRFGSPDDFKK LVDEAHGLGLVVLLDIVHSYASADELVGLSLFDGSNDCYFHSGARYCSVVGDFNQWSTTENCAR EGHLGHDDFGYWTIILEDKLREGQEPDEYYFQEYNYADDYDKGDNGVDVEELIHRMNEEYWEPG EIKSQKSRLEVVAKLYEQMFGPNGPQTEEELGDIPDAETRYNEWKALQKDDSASSLPCYDIIDN GQEFDIFNVATDRVSFEKFQGKSPPLAYWVEMRKGRKAWLEKYVPAISHKDKYRVYFNTPDGGL ERIPAWATYVLPDAEGKQSYAVHWDPPPEEIYKWRFERPKVKGSLRIYECHVGISGSEQKISSF QEFTSNVLPHIKDAGYNAIQLIGIVEHKDYSSVGYKVTNYFSVSSRFGSPDDFKKLVDEAHGLG LVVLLDIVHSYASADELVGLSLFDGSNDCYFHSGARYCSVVGDFNQWSTTENCAREGHLGHDDF GYWTIILEDKLREGQEPDEYYFQEYNYADDYDKGDNGVDVEELIHRMNEEYWEPGEIKSQKSRL EVVAKLYEQMFGPNGPQTEEELGDIPDAETRYNEWKALQKDDSASSLPCYDIIDNGQEFDIFNV ATDRVSFEKFQGKSPPLAYWVEMRKGRKAWLEKYVPAISHKDKYRVYFNTPDGGLERIPAWATY VLPDAEGKQSYAVHWDPPPEEIYKWRFERPKVKGSLRIYECHVGISGSEQKISSFQEFTSNVLP HIKDAGYNAIQLIGIVEHKDYSSVGYKVTNYFSVSSRFGSPDDFKKLVDEAHGLGLVVLLDIVH SYASADELVGLSLFDGSNDCYFHSGARYCSVVGDFNQWSTTENCAREGHLGHDDFGYWTIILED KLREGQEPDEYYFQEYNYADDYDKGDNGVDVEELIHRMNEEYWEPGEIKSQKSRLEVVAKLYEQ MFGPNGPQTEEELGDIPDAETRYNEWKALQKDDSASSLPCYDIIDNGQEFDIFNVATDRVSFEK FQGKSPPLAYWVEMRKGRKAWLEKYVPAISHKDKYRVYFNTPDGGLERIPAWATYVLPDAEGKQ SYAVHWDPPPEEIYKWRFERPKVKGSLRIYECHVGISGSEQKISSFQEFTSNVLPHIKDAGYNA IQLIGIVEHKDYSSVGYKVTNYFSVSSRFGSPDDFKKLVDEAHGLGLVVLLDIVHSYASADELV GLSLFDGSNDCYFHS(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ye et al., 2015;Chu et al., 2017 |