Detail information of Os06g0367100_circ_g.1


General Information
CircRNA Name Os06g0367100_circ_g.1
ID in PlantcircBase osa_circ_030801
Alias Os_ciR3424
Organism Oryza sativa
Position chr6: 15339696-15342783  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, find_circ
Parent gene Os06g0367100
Parent gene annotation Glycoside hydrolase, subgroup, catalytic core domain containing
protein. (Os06t0367100-01);Similar to starch branching enzyme II
I. (Os06t0367100-02)
Parent gene strand +
Alternative splicing Os06g0367100_circ_g.2 Os06g0367100_circ_g.3
Support reads 3/1
Tissues root/shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os06t0367100-01:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTAGTGGTGCTTCTTGATATTGTCCACTCCTATGCATCAGCAGATGAATTGGTTGGCTTATCCC
TCTTTGATGGTTCTAATGATTGTTACTTCCACAGCGgtgctcgttattgttctgtagtgggtga
ttttaatcagtggtcaactactgaaaattgtgcacgcgaaggtcatttgggacatgatgatttt
ggatattg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTGCTCGTTATTGTTCTGTAGTGGGTGATTTTAATCAGTGGTCAACTACTGAAAATTGTGCACG
CGAAGGTCATTTGGGACATGATGATTTTGGATATTGGACTATCATACTTGAAGATAAACTTAGG
GAAGGGCAAGAACCAGATGAATATTATTTCCAAGAGTACAACTACGCAGATGATTATGACAAAG
GTGATAATGGTGTTGATGTGGAAGAATTGATCCACAGAATGAACGAAGAGTATTGGGAACCTGG
AGAAATTAAGTCACAGAAGTCTCGGTTAGAGGTGGTTGCTAAGCTATATGAGCAAATGTTTGGT
CCAAATGGTCCACAAACAGAGGAGGAACTAGGTGACATACCTGATGCTGAAACAAGATATAATG
AGTGGAAAGCCTTGCAGAAGGATGATTCAGCAAGTTCGTTGCCTTGCTATGATATCATTGATAA
TGGGCAGGAGTTTGACATTTTCAATGTTGCAACCGATCGAGTGTCATTTGAAAAATTTCAAGGA
AAATCACCACCTCTTGCTTACTGGGTTGAAATGAGGAAAGGGCGAAAAGCTTGGTTGGAGAAAT
ATGTTCCAGCAATTTCTCATAAAGACAAGTACCGTGTTTATTTTAACACTCCTGATGGTGGTTT
GGAACGCATTCCTGCTTGGGCTACTTATGTTCTTCCAGGTTCTCCCAACTTATCATTGTAATGA
TATTCTTCTATTATTATAGATTGGCTTGCAATACATGTATTGTCATTGTTACTGTAAGTACTGC
AGTTTGTCTCAGTACAATGCTGACTTAATTGAAAAGGTAGTAAATGACGATACAGATTTAGTAA
AAGATGTTGTCACATTTTTTTTTATTGCTAGATCTTCATAAATGGCTACAGGTTTATTAATGAT
TATTATCATTGGTAATTATAAGGTTTGTTGTGATAAGCTGACATGATTACACAAGTTGCATGTT
GTTTTCTTGCAAAGATTTTTCTTTAGTTTGTAATATTAATAGTTCTACTTTAAATAGCTCTTGC
ACTTTGCACATACATTATTAGATTATTTTGTTAAATGTTAATGCCATCTTTACTTGTCGAGCTC
ACAGCTCTCGTGTTCAATTTTCCAATCCAGGTTAAATAATAATTCAAAATTCTAGTTTTTGTGT
AGATGCTGAAGGGAAGCAGTCCTATGCAGTACACTGGGATCCTCCTCCAGAAGAAATTTATAAA
TGGAGATTTGAACGGCCGAAGGTCAAAGGTTCACTTAGGATATACGAATGTCATGTTGGAATAA
GTGGATCGGAGCAAAAAATATCGTCATTTCAGGAGTTCACATCAAATGTATTTCCTAACACCTG
CCTTTCGGTGTTTTGTGGTTACTCTTAACTTCATTATCAACTTTTGTTTCTTCCATTAGGTCCT
CCCTCATATAAAAGATGCTGGCTATAATGCTATTCAATTGATTGGAATTGTGGAACACAAGGAT
TACTCTTCTGTTGGCTATAAGGTGAGAATTTACTGATTTAAACAGCATATTGTAATAATATACA
ATATTTCTCTGTGGTCTTTTTCTGTAGCAAAGATTGGAGTTCAACCACTCGGTAGCAATAATAT
CACAGAATATAACCCCATAATGGATTCTATCAAACCTTGCTCTCGAACCCATCATGCTTGTAAT
CATGTAGATTCACTTATACTTGGGTGGAATCTTGTTAAACCATCCTTTTCCTTGTTGCCATGTA
ATTGTTTACCCATTCTTGGTACCATTTTCTCTGCAATGTGAGGTAACCTTGTTCCTGCTGTCAG
GTAAACACTTTACTGCTTTGAGTAAGCTATCACAAACTTCAAGTCAACTCCACTGGAGTTCCAA
CAAGACTATAAAGGGCTACCCTTGCCCAAATGGAAGTTAAATTCAATGAACCATTAAAATGCTG
GCTATGCTGATCGCTGATAAAATCAAACGAAATGTGGTGTAACCTTGATTCTACAATTGGAAAC
ATACTTATGGTTTACACCTTTACACTTAACCACACTGAGCAGAGTGATGTACTTTGTAGTCCAA
AACTCCAAATATATCTAAGTGTCTGGGAATATATACAGTGTAAAATGAGATTTTTGAAATATAT
TCTGCTATACCATACAGTCAGACAATAATAATGAACATCGTAAACTTTTACAAACTAATATACA
TGGGATCTAATGATGCTTCAGATAACTTTCTAGCTTTCAGGAGGTTTCGGGAGTTATGGAGGAA
AAAAACTATTCGTTGTAATCAGAGAATTTATGTTGTTAAAATAACTGCCACAATGATTTTTCTC
CGATGTAGAATTACATCCAGAAGCTACACTGTAAATGATTACTGCATTTATAAACAATAGAAAT
CTTCCACTGTATTCAACTCTTTTTAGAATATTCCATTTCTGTATAGTTGTCTTAGAAAAAATGT
GTTGTATTTGCAGGTCACCAATTATTTTTCAGTCAGTAGCAGATTTGGCTCGCCAGATGACTTC
AAAAAACTAGTGGATGAGGCACACGGTTTGCTTCTCAAATATAATTATTTTGAGCAACAATGGA
AATTCACACAGTAATTTAAAAACTCATGCTTATTCATGTGGTAGTCCTGAGCTTACTGCACGCG
TTATATTTGAGGCAGGCCTTGCACAAAACGTTCTTTGCATTAAAATATTTTCTGTTTTCTTGCT
TTTGGCAAAGTTGAATTTCCAGGTCATAGTAAAAAGAGTATCGCATTTTGGTATGTCTAACTGT
GCTACTAGGTAGTGCAAAGTGCAATTTACTCTAAAAATAACAATGAAGTCTTTGTGTTTGATAT
CTTCTTGGTGCTTTTCATGCATTCTGTTATGCATGCAAGTTTGAAATATCACAAGTGGCATATC
TGTAGCAAATTGTCCTATAATTTGGTAGCACTATATTATGAAGTGAAACAGTCACAAGAATTAA
CATCTGTGCCTTTTCACACCCTTGTGGTTTGCTCAGGCCTTGGATTAGTGGTGCTTCTTGATAT
TGTCCACTCCTATGCATCAGCAGATGAATTGGTTGGCTTATCCCTCTTTGATGGTTCTAATGAT
TGTTACTTCCACAGCG
Conservation Information
Conserved circRNAs osi_circ_008296 osi_circ_019045
PMCS 0.457136626
Functional Information
Coding potential Y
Potential coding position 15342716-15339713(+)
15339927-15342780(+)
Potential amino acid sequence MHQQMNWLAYPSLMVLMIVTSTAVLVIVL*(+)
MNEEYWEPGEIKSQKSRLEVVAKLYEQMFGPNGPQTEEELGDIPDAETRYNEWKALQKDDSASS
LPCYDIIDNGQEFDIFNVATDRVSFEKFQGKSPPLAYWVEMRKGRKAWLEKYVPAISHKDKYRV
YFNTPDGGLERIPAWATYVLPDAEGKQSYAVHWDPPPEEIYKWRFERPKVKGSLRIYECHVGIS
GSEQKISSFQEFTSNVLPHIKDAGYNAIQLIGIVEHKDYSSVGYKVTNYFSVSSRFGSPDDFKK
LVDEAHGLGLVVLLDIVHSYASADELVGLSLFDGSNDCYFHSGARYCSVVGDFNQWSTTENCAR
EGHLGHDDFGYWTIILEDKLREGQEPDEYYFQEYNYADDYDKGDNGVDVEELIHRMNEEYWEPG
EIKSQKSRLEVVAKLYEQMFGPNGPQTEEELGDIPDAETRYNEWKALQKDDSASSLPCYDIIDN
GQEFDIFNVATDRVSFEKFQGKSPPLAYWVEMRKGRKAWLEKYVPAISHKDKYRVYFNTPDGGL
ERIPAWATYVLPDAEGKQSYAVHWDPPPEEIYKWRFERPKVKGSLRIYECHVGISGSEQKISSF
QEFTSNVLPHIKDAGYNAIQLIGIVEHKDYSSVGYKVTNYFSVSSRFGSPDDFKKLVDEAHGLG
LVVLLDIVHSYASADELVGLSLFDGSNDCYFHSGARYCSVVGDFNQWSTTENCAREGHLGHDDF
GYWTIILEDKLREGQEPDEYYFQEYNYADDYDKGDNGVDVEELIHRMNEEYWEPGEIKSQKSRL
EVVAKLYEQMFGPNGPQTEEELGDIPDAETRYNEWKALQKDDSASSLPCYDIIDNGQEFDIFNV
ATDRVSFEKFQGKSPPLAYWVEMRKGRKAWLEKYVPAISHKDKYRVYFNTPDGGLERIPAWATY
VLPDAEGKQSYAVHWDPPPEEIYKWRFERPKVKGSLRIYECHVGISGSEQKISSFQEFTSNVLP
HIKDAGYNAIQLIGIVEHKDYSSVGYKVTNYFSVSSRFGSPDDFKKLVDEAHGLGLVVLLDIVH
SYASADELVGLSLFDGSNDCYFHSGARYCSVVGDFNQWSTTENCAREGHLGHDDFGYWTIILED
KLREGQEPDEYYFQEYNYADDYDKGDNGVDVEELIHRMNEEYWEPGEIKSQKSRLEVVAKLYEQ
MFGPNGPQTEEELGDIPDAETRYNEWKALQKDDSASSLPCYDIIDNGQEFDIFNVATDRVSFEK
FQGKSPPLAYWVEMRKGRKAWLEKYVPAISHKDKYRVYFNTPDGGLERIPAWATYVLPDAEGKQ
SYAVHWDPPPEEIYKWRFERPKVKGSLRIYECHVGISGSEQKISSFQEFTSNVLPHIKDAGYNA
IQLIGIVEHKDYSSVGYKVTNYFSVSSRFGSPDDFKKLVDEAHGLGLVVLLDIVHSYASADELV
GLSLFDGSNDCYFHS(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017