Plant Circular RNA Database

Detail information of Os06g0367100_circ_g.2

			
						 General Information
					
						CircRNA Name
						Os06g0367100_circ_g.2
					
						ID in PlantcircBase
						osa_circ_030802
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr6: 15340850-15342783  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os06g0367100						
					
						Parent gene annotation
						
							Glycoside hydrolase, subgroup, catalytic core domain containing 
protein. (Os06t0367100-01);Similar to starch branching enzyme II
I. (Os06t0367100-02)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os06g0367100_circ_g.1 Os06g0367100_circ_g.3 						
					
						Support reads
						1
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os06t0367100-01:4

General Information
CircRNA Name	Os06g0367100_circ_g.2
ID in PlantcircBase	osa_circ_030802
Alias	NA
Organism	Oryza sativa
Position	chr6: 15340850-15342783 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os06g0367100
Parent gene annotation	Glycoside hydrolase, subgroup, catalytic core domain containing protein. (Os06t0367100-01);Similar to starch branching enzyme II I. (Os06t0367100-02)
Parent gene strand	+
Alternative splicing	Os06g0367100_circ_g.1 Os06g0367100_circ_g.3
Support reads	1
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os06t0367100-01:4

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TTAGTGGTGCTTCTTGATATTGTCCACTCCTATGCATCAGCAGATGAATTGGTTGGCTTATCCC
TCTTTGATGGTTCTAATGATTGTTACTTCCACAGCGatgctgaagggaagcagtcctatgcagt
acactgggatcctcctccagaagaaatttataaatggagatttgaacggccgaaggtcaaaggt
tcacttag

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 447
Transcript exons: 15340850-15341022,15341099-15341188,15342141-15342216,15
342676-15342783
ATGCTGAAGGGAAGCAGTCCTATGCAGTACACTGGGATCCTCCTCCAGAAGAAATTTATAAATG
GAGATTTGAACGGCCGAAGGTCAAAGGTTCACTTAGGATATACGAATGTCATGTTGGAATAAGT
GGATCGGAGCAAAAAATATCGTCATTTCAGGAGTTCACATCAAATGTCCTCCCTCATATAAAAG
ATGCTGGCTATAATGCTATTCAATTGATTGGAATTGTGGAACACAAGGATTACTCTTCTGTTGG
CTATAAGGTCACCAATTATTTTTCAGTCAGTAGCAGATTTGGCTCGCCAGATGACTTCAAAAAA
CTAGTGGATGAGGCACACGGCCTTGGATTAGTGGTGCTTCTTGATATTGTCCACTCCTATGCAT
CAGCAGATGAATTGGTTGGCTTATCCCTCTTTGATGGTTCTAATGATTGTTACTTCCACAGCG
						
					

						Genomic sequence
						
							ATGCTGAAGGGAAGCAGTCCTATGCAGTACACTGGGATCCTCCTCCAGAAGAAATTTATAAATG
GAGATTTGAACGGCCGAAGGTCAAAGGTTCACTTAGGATATACGAATGTCATGTTGGAATAAGT
GGATCGGAGCAAAAAATATCGTCATTTCAGGAGTTCACATCAAATGTATTTCCTAACACCTGCC
TTTCGGTGTTTTGTGGTTACTCTTAACTTCATTATCAACTTTTGTTTCTTCCATTAGGTCCTCC
CTCATATAAAAGATGCTGGCTATAATGCTATTCAATTGATTGGAATTGTGGAACACAAGGATTA
CTCTTCTGTTGGCTATAAGGTGAGAATTTACTGATTTAAACAGCATATTGTAATAATATACAAT
ATTTCTCTGTGGTCTTTTTCTGTAGCAAAGATTGGAGTTCAACCACTCGGTAGCAATAATATCA
CAGAATATAACCCCATAATGGATTCTATCAAACCTTGCTCTCGAACCCATCATGCTTGTAATCA
TGTAGATTCACTTATACTTGGGTGGAATCTTGTTAAACCATCCTTTTCCTTGTTGCCATGTAAT
TGTTTACCCATTCTTGGTACCATTTTCTCTGCAATGTGAGGTAACCTTGTTCCTGCTGTCAGGT
AAACACTTTACTGCTTTGAGTAAGCTATCACAAACTTCAAGTCAACTCCACTGGAGTTCCAACA
AGACTATAAAGGGCTACCCTTGCCCAAATGGAAGTTAAATTCAATGAACCATTAAAATGCTGGC
TATGCTGATCGCTGATAAAATCAAACGAAATGTGGTGTAACCTTGATTCTACAATTGGAAACAT
ACTTATGGTTTACACCTTTACACTTAACCACACTGAGCAGAGTGATGTACTTTGTAGTCCAAAA
CTCCAAATATATCTAAGTGTCTGGGAATATATACAGTGTAAAATGAGATTTTTGAAATATATTC
TGCTATACCATACAGTCAGACAATAATAATGAACATCGTAAACTTTTACAAACTAATATACATG
GGATCTAATGATGCTTCAGATAACTTTCTAGCTTTCAGGAGGTTTCGGGAGTTATGGAGGAAAA
AAACTATTCGTTGTAATCAGAGAATTTATGTTGTTAAAATAACTGCCACAATGATTTTTCTCCG
ATGTAGAATTACATCCAGAAGCTACACTGTAAATGATTACTGCATTTATAAACAATAGAAATCT
TCCACTGTATTCAACTCTTTTTAGAATATTCCATTTCTGTATAGTTGTCTTAGAAAAAATGTGT
TGTATTTGCAGGTCACCAATTATTTTTCAGTCAGTAGCAGATTTGGCTCGCCAGATGACTTCAA
AAAACTAGTGGATGAGGCACACGGTTTGCTTCTCAAATATAATTATTTTGAGCAACAATGGAAA
TTCACACAGTAATTTAAAAACTCATGCTTATTCATGTGGTAGTCCTGAGCTTACTGCACGCGTT
ATATTTGAGGCAGGCCTTGCACAAAACGTTCTTTGCATTAAAATATTTTCTGTTTTCTTGCTTT
TGGCAAAGTTGAATTTCCAGGTCATAGTAAAAAGAGTATCGCATTTTGGTATGTCTAACTGTGC
TACTAGGTAGTGCAAAGTGCAATTTACTCTAAAAATAACAATGAAGTCTTTGTGTTTGATATCT
TCTTGGTGCTTTTCATGCATTCTGTTATGCATGCAAGTTTGAAATATCACAAGTGGCATATCTG
TAGCAAATTGTCCTATAATTTGGTAGCACTATATTATGAAGTGAAACAGTCACAAGAATTAACA
TCTGTGCCTTTTCACACCCTTGTGGTTTGCTCAGGCCTTGGATTAGTGGTGCTTCTTGATATTG
TCCACTCCTATGCATCAGCAGATGAATTGGTTGGCTTATCCCTCTTTGATGGTTCTAATGATTG
TTACTTCCACAGCG
						
					

			
		

Sequences
Splice junction sequence	TTAGTGGTGCTTCTTGATATTGTCCACTCCTATGCATCAGCAGATGAATTGGTTGGCTTATCCC TCTTTGATGGTTCTAATGATTGTTACTTCCACAGCGatgctgaagggaagcagtcctatgcagt acactgggatcctcctccagaagaaatttataaatggagatttgaacggccgaaggtcaaaggt tcacttag
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 447 Transcript exons: 15340850-15341022,15341099-15341188,15342141-15342216,15 342676-15342783 ATGCTGAAGGGAAGCAGTCCTATGCAGTACACTGGGATCCTCCTCCAGAAGAAATTTATAAATG GAGATTTGAACGGCCGAAGGTCAAAGGTTCACTTAGGATATACGAATGTCATGTTGGAATAAGT GGATCGGAGCAAAAAATATCGTCATTTCAGGAGTTCACATCAAATGTCCTCCCTCATATAAAAG ATGCTGGCTATAATGCTATTCAATTGATTGGAATTGTGGAACACAAGGATTACTCTTCTGTTGG CTATAAGGTCACCAATTATTTTTCAGTCAGTAGCAGATTTGGCTCGCCAGATGACTTCAAAAAA CTAGTGGATGAGGCACACGGCCTTGGATTAGTGGTGCTTCTTGATATTGTCCACTCCTATGCAT CAGCAGATGAATTGGTTGGCTTATCCCTCTTTGATGGTTCTAATGATTGTTACTTCCACAGCG
Genomic sequence	ATGCTGAAGGGAAGCAGTCCTATGCAGTACACTGGGATCCTCCTCCAGAAGAAATTTATAAATG GAGATTTGAACGGCCGAAGGTCAAAGGTTCACTTAGGATATACGAATGTCATGTTGGAATAAGT GGATCGGAGCAAAAAATATCGTCATTTCAGGAGTTCACATCAAATGTATTTCCTAACACCTGCC TTTCGGTGTTTTGTGGTTACTCTTAACTTCATTATCAACTTTTGTTTCTTCCATTAGGTCCTCC CTCATATAAAAGATGCTGGCTATAATGCTATTCAATTGATTGGAATTGTGGAACACAAGGATTA CTCTTCTGTTGGCTATAAGGTGAGAATTTACTGATTTAAACAGCATATTGTAATAATATACAAT ATTTCTCTGTGGTCTTTTTCTGTAGCAAAGATTGGAGTTCAACCACTCGGTAGCAATAATATCA CAGAATATAACCCCATAATGGATTCTATCAAACCTTGCTCTCGAACCCATCATGCTTGTAATCA TGTAGATTCACTTATACTTGGGTGGAATCTTGTTAAACCATCCTTTTCCTTGTTGCCATGTAAT TGTTTACCCATTCTTGGTACCATTTTCTCTGCAATGTGAGGTAACCTTGTTCCTGCTGTCAGGT AAACACTTTACTGCTTTGAGTAAGCTATCACAAACTTCAAGTCAACTCCACTGGAGTTCCAACA AGACTATAAAGGGCTACCCTTGCCCAAATGGAAGTTAAATTCAATGAACCATTAAAATGCTGGC TATGCTGATCGCTGATAAAATCAAACGAAATGTGGTGTAACCTTGATTCTACAATTGGAAACAT ACTTATGGTTTACACCTTTACACTTAACCACACTGAGCAGAGTGATGTACTTTGTAGTCCAAAA CTCCAAATATATCTAAGTGTCTGGGAATATATACAGTGTAAAATGAGATTTTTGAAATATATTC TGCTATACCATACAGTCAGACAATAATAATGAACATCGTAAACTTTTACAAACTAATATACATG GGATCTAATGATGCTTCAGATAACTTTCTAGCTTTCAGGAGGTTTCGGGAGTTATGGAGGAAAA AAACTATTCGTTGTAATCAGAGAATTTATGTTGTTAAAATAACTGCCACAATGATTTTTCTCCG ATGTAGAATTACATCCAGAAGCTACACTGTAAATGATTACTGCATTTATAAACAATAGAAATCT TCCACTGTATTCAACTCTTTTTAGAATATTCCATTTCTGTATAGTTGTCTTAGAAAAAATGTGT TGTATTTGCAGGTCACCAATTATTTTTCAGTCAGTAGCAGATTTGGCTCGCCAGATGACTTCAA AAAACTAGTGGATGAGGCACACGGTTTGCTTCTCAAATATAATTATTTTGAGCAACAATGGAAA TTCACACAGTAATTTAAAAACTCATGCTTATTCATGTGGTAGTCCTGAGCTTACTGCACGCGTT ATATTTGAGGCAGGCCTTGCACAAAACGTTCTTTGCATTAAAATATTTTCTGTTTTCTTGCTTT TGGCAAAGTTGAATTTCCAGGTCATAGTAAAAAGAGTATCGCATTTTGGTATGTCTAACTGTGC TACTAGGTAGTGCAAAGTGCAATTTACTCTAAAAATAACAATGAAGTCTTTGTGTTTGATATCT TCTTGGTGCTTTTCATGCATTCTGTTATGCATGCAAGTTTGAAATATCACAAGTGGCATATCTG TAGCAAATTGTCCTATAATTTGGTAGCACTATATTATGAAGTGAAACAGTCACAAGAATTAACA TCTGTGCCTTTTCACACCCTTGTGGTTTGCTCAGGCCTTGGATTAGTGGTGCTTCTTGATATTG TCCACTCCTATGCATCAGCAGATGAATTGGTTGGCTTATCCCTCTTTGATGGTTCTAATGATTG TTACTTCCACAGCG

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_019044 						
					
						PMCS
						0.32457045

Conservation Information
Conserved circRNAs	osi_circ_019044
PMCS	0.32457045

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							15342716-15340972(+)
						
						Potential amino acid sequence
						
							MHQQMNWLAYPSLMVLMIVTSTAMLKGSSPMQYTGILLQKKFINGDLNGRRSKVHLGYTNVMLE
*(+)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	15342716-15340972(+)
Potential amino acid sequence	MHQQMNWLAYPSLMVLMIVTSTAMLKGSSPMQYTGILLQKKFINGDLNGRRSKVHLGYTNVMLE *(+)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os06g0367100_circ_g.2

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