Detail information of AT2G45140_circ_g.3


General Information
CircRNA Name AT2G45140_circ_g.3
ID in PlantcircBase ath_circ_018454
Alias NA
Organism Arabidpsis thaliana
Position chr2: 18612010-18612506  JBrowse»
Reference genome TAIR10.38
Type   i-circRNA
Identification method CIRCexplorer, CIRI
Parent gene AT2G45140
Parent gene annotation Vesicle-associated protein 1-2
Parent gene strand +
Alternative splicing 2_circ_igg.3 2_circ_igg.4 2_circ_ag.5 2_circ_ag.6 AT2G44860_circ_g.1 AT2G44860_circ_g.2 AT2G44860_circ_g.3 AT2G44870_circ_g.1 AT2G44900_circ_g.1 AT2G44900_circ_g.2 AT2G44910_circ_g.1 AT2G44910_circ_g.2 AT2G44920_circ_g.1 AT2G44920_circ_g.2 AT2G44920_circ_g.3 AT2G44950_circ_g.1 AT2G44950_circ_g.2 AT2G44950_circ_g.3 AT2G44950_circ_g.4 AT2G44950_circ_g.5 AT2G44950_circ_g.6 AT2G44950_circ_g.7 AT2G44970_circ_g.1 AT2G44970_circ_g.2 AT2G44970_circ_g.3 AT2G44970_circ_g.4 AT2G44970_circ_g.5 AT2G44980_circ_g.1 AT2G45000_circ_g.1 AT2G45000_circ_g.2 AT2G45000_circ_g.3 AT2G45023_circ_g.1 AT2G45030_circ_g.1 AT2G45030_circ_g.2 AT2G45030_circ_g.3 AT2G45060_circ_g.1 AT2G45060_circ_g.2 AT2G45060_circ_g.3 AT2G45060_circ_g.4 AT2G45060_circ_g.5 AT2G45100_circ_g.1 AT2G45135_circ_g.1 AT2G45140_circ_g.1 AT2G45140_circ_g.2 AT2G45160_circ_g.1 AT2G45170_circ_g.1 AT2G45170_circ_g.2 AT2G45170_circ_g.3 AT2G45170_circ_g.4 AT2G45180_circ_g.1 AT2G45180_circ_g.2 AT2G45180_circ_g.3 AT2G45180_circ_g.4 AT2G45180_circ_g.5 AT2G45180_circ_g.6 AT2G45180_circ_g.7 AT2G45180_circ_g.8 AT2G45180_circ_g.9 AT2G45180_circ_g.10 AT2G45180_circ_g.11 AT2G45180_circ_g.12 AT2G45180_circ_g.13 AT2G45180_circ_g.14 AT2G45180_circ_g.15 AT2G45180_circ_g.16 AT2G45190_circ_g.1 AT2G45190_circ_g.2 AT2G45190_circ_g.3 AT2G45200_circ_g.1 AT2G45200_circ_g.2 AT2G45200_circ_g.3 AT2G45200_circ_g.4 AT2G45200_circ_g.5 AT2G45200_circ_g.6 AT2G45240_circ_g.1 AT2G45240_circ_g.2 AT2G45240_circ_g.3 AT2G45240_circ_g.4 AT2G45240_circ_g.5 AT2G45240_circ_g.6 AT2G45240_circ_g.7 AT2G45240_circ_g.8 AT2G45240_circ_g.9 2_circ_ag.10 AT2G45250_circ_g.1 AT2G45250_circ_g.2
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATGCAATTGAATTGGTCTAAGCTGCAACATATCTACTAGCTATTAATTGGCACATTTTAGCATT
GAAGTTACGAGACCTGAGTGATCATTCTATTACAATgtaatttaataacccatctgacgcttca
tgtaactgagctaacttggcatgataaagagtggatgagttttacactattacgctacctacat
tagtttac
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 497
Transcript exons: 18612010-18612506
GTAATTTAATAACCCATCTGACGCTTCATGTAACTGAGCTAACTTGGCATGATAAAGAGTGGAT
GAGTTTTACACTATTACGCTACCTACATTAGTTTACCATTCAACCCTATGGAATTCTCTTTCTT
GTCAGGTTGTTTAGAGCAGTTTAGTCTTTTTTTTGTTGAAGTTCAGATCATTCCAGTTATTAGC
AACTTAATGGCTCTTTTATTGTACACTGCTTGATGTGAAATTCTCAAACCTATTAGGCCAATAA
TCTTAACTTTTTGTTTATTACTGAAGAATTCTGAATAATCTTAACCTTGTTTGAATGAAGCTTT
AACTAATTTCTGAAAATACTGTCGTCCAGAAGAATATTGTTTCCTCTGCTGTAGTTTTAGCTTT
TTACTGATTATGCATGCAATTGAATTGGTCTAAGCTGCAACATATCTACTAGCTATTAATTGGC
ACATTTTAGCATTGAAGTTACGAGACCTGAGTGATCATTCTATTACAAT

Genomic sequence GTAATTTAATAACCCATCTGACGCTTCATGTAACTGAGCTAACTTGGCATGATAAAGAGTGGAT
GAGTTTTACACTATTACGCTACCTACATTAGTTTACCATTCAACCCTATGGAATTCTCTTTCTT
GTCAGGTTGTTTAGAGCAGTTTAGTCTTTTTTTTGTTGAAGTTCAGATCATTCCAGTTATTAGC
AACTTAATGGCTCTTTTATTGTACACTGCTTGATGTGAAATTCTCAAACCTATTAGGCCAATAA
TCTTAACTTTTTGTTTATTACTGAAGAATTCTGAATAATCTTAACCTTGTTTGAATGAAGCTTT
AACTAATTTCTGAAAATACTGTCGTCCAGAAGAATATTGTTTCCTCTGCTGTAGTTTTAGCTTT
TTACTGATTATGCATGCAATTGAATTGGTCTAAGCTGCAACATATCTACTAGCTATTAATTGGC
ACATTTTAGCATTGAAGTTACGAGACCTGAGTGATCATTCTATTACAAT
Conservation Information
Conserved circRNAs NA
PMCS 0.515537419
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017