Detail information of AT5G40450_circ_g.13


General Information
CircRNA Name AT5G40450_circ_g.13
ID in PlantcircBase ath_circ_041722
Alias NA
Organism Arabidpsis thaliana
Position chr5: 16189826-16192005  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method PcircRNA_finder
Parent gene AT5G40450
Parent gene annotation unknown protein
Parent gene strand -
Alternative splicing AT5G40450_circ_g.1 AT5G40450_circ_g.2 AT5G40450_circ_g.3 5_circ_ag.4 AT5G40450_circ_g.5 AT5G40450_circ_g.6 AT5G40450_circ_g.7 AT5G40450_circ_g.8 AT5G40450_circ_g.9 AT5G40450_circ_g.10 AT5G40450_circ_g.11 AT5G40450_circ_g.12 AT5G40450_circ_g.14 AT5G40450_circ_g.15 AT5G40450_circ_g.16 AT5G40450_circ_g.17 AT5G40450_circ_g.18 AT5G40450_circ_g.19 AT5G40450_circ_g.20 AT5G40450_circ_g.21 AT5G40450_circ_g.22 AT5G40450_circ_g.23 AT5G40450_circ_g.24 AT5G40450_circ_g.25 AT5G40450_circ_g.26 AT5G40480_circ_g.1 AT5G40480_circ_g.2 AT5G40480_circ_g.3 AT5G40480_circ_g.4 AT5G40480_circ_g.5 AT5G40480_circ_g.6 AT5G40480_circ_g.7 AT5G40480_circ_g.8 AT5G40490_circ_g.1 AT5G40530_circ_g.1 AT5G40530_circ_g.2 AT5G40530_circ_g.3 AT5G40530_circ_g.4 AT5G40530_circ_g.5 AT5G40550_circ_g.1 AT5G40580_circ_g.1 AT5G40580_circ_g.2 AT5G40600_circ_g.1 AT5G40610_circ_g.1 AT5G40630_circ_g.1 AT5G40640_circ_g.1 AT5G40645_circ_g.1 AT5G40670_circ_g.1 AT5G40670_circ_g.2 AT5G40690_circ_g.1 AT5G40710_circ_g.1 AT5G40740_circ_g.1 AT5G40740_circ_g.2
Support reads 43
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT5G40450.2:2
AT5G40450.1:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAACAGATTCTTCTTTTCCATGGCTCTCATCTTTAATCTCCGAGCTACAAGGTTCCGTATGTTC
ACCAAATTGTTCTTCTTGAACAGCAGAAGATCTTACctcattagaaaaaatgacagtctttact
gtttctgcttctttttgttctttgtccactttcaggtccagactggtttcactatgcattgcct
ctggttca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCATTAGAAAAAATGACAGTCTTTACTGTTTCTGCTTCTTTTTGTTCTTTGTCCACTTTCAGG
TCCAGACTGGTTTCACTATGCATTGCCTCTGGTTCACTAATATTGGTCTCCAAAGTCTTTAAGA
TCGCAGCTTCTTCGACTGTTGAAGTATCTACCGCCTCAGCTTTAAGGGTCTCACATTGTGGTAT
GTCTCTCTCCAATACATGTTCATGTTCCTCTGTATCCTTTGAGCTTTGATCTACCTCTTCCTTA
AGTTCTAGTGAGGTTTCAGATTCAATGTCCTCTCCTTGAATTGTTGGTGTTTCGATTACCGTAG
GACCTTCTTGCACCTGCTCAGAAAAAAGATTAATCAGTGTTAATAAAGTTTTCTTAGTAATATT
TTTCTCAGATTTGAGGAATTAAGACAAACCTTTTCTATTTTTTCGGTTATGTCCGCTTCCCTTT
CTGTGTCTACAGTCACTTCACGTGAGATTTGCTCTGCATCATCTAAGTTTTGTGTTGCTTCTAC
TGGTTCTGCATTTTTCTCCTGATGATTATCTCCTTTCAAGCTTTCAGATTCATGAGCTGTAGTT
TCTTCATTATTAACGATCTTAGCGTCTTGGACAACTGTCTTTACAGTCTCTAGTTCCTCTTTCT
CTATCGCATCCAACCTCGGTTCTGCATCTGTCTTCATCTCTGCCTCTTCTTCTTCTTTTCTCAC
TTCAAGAAGAACACTTTTTGTAGTTTCCACATCATCTAGTGATTCACCATTTGTTGCAGTTTCT
TCTTCTGCAGCTTCTACGCTATGCAACGCATACGTTTCATTCACAATGTTCTCACTGTTCGTCG
ATATTTCCTTTTCTTGTTCCTCTTTGGAGCATGCCTCTTTGACTTGTTCCTCTGGCTGATTCTG
ATTGATAGAGCATATTTCAGTCAAAGAAGGTCCAATATCTCTTGCCTGCTCCACTCTAGTCTCA
TGAATTTTTGTTGCATCGTCCTCATTTTTTATTTGGAGCATCGGTACTTCCTCCTTCGCTTTTT
CGTCTACTATTTCCTCAGCAACAGTCACATGATCTTGCTCCTCAGAAGAAAATAGCAATGAACT
AGGAGATTCAACTGTTTGCACAGTCTCAAGACTTTTTTGGATCTTCTCTGCTGCTTGTTCTTCT
TCATTCTCTTTTATGTTTTCAATATTTTCGGCTTCAACAACAGTCTCACCTTCCAGTTCCTTTG
AAGGTGATGCAGATAAAACTTCTATGACTTCATCAGATTTAACTTCTTCATTTGTTGGTTCATG
CTTCTCTAACTTTGTTTCCTTTTCTTGCTCATTTGGTTGGGATGATTCTTCTTGCAGAGGAGTC
AGATCAGTCACACTCCTTTCTTCCTGGGCTATTTCTCCAAGCTCAATACTGTCTGTTTTTTCTT
CGATTTTCTCATCAACGGTTTTGCTTGATTCCTCTAATACTTCAGAAGGAGACTCAAGTGTTGG
CTTCTGCAGAGGAGTCGGATCAATCACACTCCTTTCTTCCTGAGGTTGTTCTTCAAGTTCAATA
CTCTCAGGTACTGAAACTGTCTCTTCTTTTGTCTCTAATCCATAGGAACCGTCCACTTGACCTT
CTTGATAGAGTGTTACTTCTTCTTCTGGTTTTTCTTCGATTTTCTCATCTACGGTTTTGCTTGT
TTCCTCAGATACTTCAGAGGGAGACTCAAGTTTTGGCTTCTGCATCTGCTCCACTGATTTAACA
TCCAGAAGAGAAACCGGCTTTGCAACTAGAATTTCCTCTGTTTCATTGGTTATGTTTTGATCAA
TTTGCTCTGCCTCTGCCCCATTAGAGTCTAAGCCTATCGGTTCCTCCATAATTTGAGTACCATC
AACTTGATCTACATTTATCTTCTCATCATTCAGCTCCTCTTTATCTACATTTAACACAAGATCT
GATGGACTTTTTTCAGATTTCTCATAGCTTCCTGTATTGGAGACTAGAACTGTCTCGGGTTCGT
TGCCTTGATACTTCTCTGATTCTGTAGATGGAACTTTAAGTACATCATGCTTGTCCTCAGTGTT
TTCGTCTTGAACAGTCTCCTGAGATTTGACCTCAACAGATTCTTCTTTTCCATGGCTCTCATCT
TTAATCTCCGAGCTACAAGGTTCCGTATGTTCACCAAATTGTTCTTCTTGAACAGCAGAAGATC
TTAC
Conservation Information
Conserved circRNAs NA
PMCS 0.097256319
Functional Information
Coding potential Y
Potential coding position 16191667-16189828(-)
Potential amino acid sequence MEEPIGLDSNGAEAEQIDQNITNETEEILVAKPVSLLDVKSVEQMQKPKLESPSEVSEETSKTV
DEKIEEKPEEEVTLYQEGQVDGSYGLETKEETVSVPESIELEEQPQEERSVIDPTPLQKPTLES
PSEVLEESSKTVDEKIEEKTDSIELGEIAQEERSVTDLTPLQEESSQPNEQEKETKLEKHEPTN
EEVKSDEVIEVLSASPSKELEGETVVEAENIENIKENEEEQAAEKIQKSLETVQTVESPSSLLF
SSEEQDHVTVAEEIVDEKAKEEVPMLQIKNEDDATKIHETRVEQARDIGPSLTEICSINQNQPE
EQVKEACSKEEQEKEISTNSENIVNETYALHSVEAAEEETATNGESLDDVETTKSVLLEVRKEE
EEAEMKTDAEPRLDAIEKEELETVKTVVQDAKIVNNEETTAHESESLKGDNHQEKNAEPVEATQ
NLDDAEQISREVTVDTEREADITEKIEKVQEGPTVIETPTIQGEDIESETSLELKEEVDQSSKD
TEEHEHVLERDIPQCETLKAEAVDTSTVEEAAILKTLETNISEPEAMHSETSLDLKVDKEQKEA
ETVKTVIFSNEVRSSAVQEEQFGEHTEPCSSEIKDESHGKEESVEVKSQETVQDENTEDKHDVL
KVPSTESEKYQGNEPETVLVSNTGSYEKSEKSPSDLVLNVDKEELNDEKINVDQVDGTQIMEEP
IGLDSNGAEAEQIDQNITNETEEILVAKPVSLLDVKSVEQMQKPKLESPSEVSEETSKTVDEKI
EEKPEEEVTLYQEGQVDGSYGLETKEETVSVPESIELEEQPQEERSVIDPTPLQKPTLESPSEV
LEESSKTVDEKIEEKTDSIELGEIAQEERSVTDLTPLQEESSQPNEQEKETKLEKHEPTNEEVK
SDEVIEVLSASPSKELEGETVVEAENIENIKENEEEQAAEKIQKSLETVQTVESPSSLLFSSEE
QDHVTVAEEIVDEKAKEEVPMLQIKNEDDATKIHETRVEQARDIGPSLTEICSINQNQPEEQVK
EACSKEEQEKEISTNSENIVNETYALHSVEAAEEETATNGESLDDVETTKSVLLEVRKEEEEAE
MKTDAEPRLDAIEKEELETVKTVVQDAKIVNNEETTAHESESLKGDNHQEKNAEPVEATQNLDD
AEQISREVTVDTEREADITEKIEKVQEGPTVIETPTIQGEDIESETSLELKEEVDQSSKDTEEH
EHVLERDIPQCETLKAEAVDTSTVEEAAILKTLETNISEPEAMHSETSLDLKVDKEQKEAETVK
TVIFSNEVRSSAVQEEQFGEHTEPCSSEIKDESHGKEESVEVKSQETVQDENTEDKHDVLKVPS
TESEKYQGNEPETVLVSNTGSYEKSEKSPSDLVLNVDKEELNDEKINVDQVDGTQIMEEPIGLD
SNGAEAEQIDQNITNETEEILVAKPVSLLDVKSVEQMQKPKLESPSEVSEETSKTVDEKIEEKP
EEEVTLYQEGQVDGSYGLETKEETVSVPESIELEEQPQEERSVIDPTPLQKPTLESPSEVLEES
SKTVDEKIEEKTDSIELGEIAQEERSVTDLTPLQEESSQPNEQEKETKLEKHEPTNEEVKSDEV
IEVLSASPSKELEGETVVEAENIENIKENEEEQAAEKIQKSLETVQTVESPSSLLFSSEEQDHV
TVAEEIVDEKAKEEVPMLQIKNEDDATKIHETRVEQARDIGPSLTEICSINQNQPEEQVKEACS
KEEQEKEISTNSENIVNETYALHSVEAAEEETATNGESLDDVETTKSVLLEVRKEEEEAEMKTD
AEPRLDAIEKEELETVKTVVQDAKIVNNEETTAHESESLKGDNHQEKNAEPVEATQNLDDAEQI
SREVTVDTEREADITEKIEKVQEGPTVIETPTIQGEDIESETSLELKEEVDQSSKDTEEHEHVL
ERDIPQCETLKAEAVDTSTVEEAAILKTLETNISEPEAMHSETSLDLKVDKEQKEAETVKTVIF
SNEVRSSAVQEEQFGEHTEPCSSEIKDESHGKEESVEVKSQETVQDENTEDKHDVLKVPSTESE
KYQGNEPETVLVSNTGSYEKSEKSPSDLVLNVDKEELNDEKINVDQVDGTQIMEEPIGLDSNGA
EAEQIDQNITNETEEILVAKPVSLLDVKSVEQMQKPKLESPSEVSEETSKTVDEKIEEKPEEEV
TLYQEGQVDGSYGLETKEETVSVPESIELEEQPQEERSVIDPTPLQKPTLESPSEVLEESSKTV
DEKIEEKTDSIELGEIAQEERSVTDLTPLQEESSQPNEQEKETKLEKHEPTNEEVKSDEVIEVL
SASPSKELEGETVVEAENIENIKENEEEQAAEKIQKSLETVQTVESPSSLLFSSEEQDHVTVAE
EIVDEKAKEEVPMLQIKNEDDATKIHETRVEQARDIGPSLTEICSINQNQPEEQVKEACSKEEQ
EKEISTNSENIVNETYALHSVEAAEEETATNGESLDDVETTKSVLLEVRKEEEEAEMKTDAEPR
LDAIEKEELETVKTVVQDAKIVNNEETTAHESESLKGDNHQEKNAEPVEATQNLDDAEQISREV
TVDTEREADITEKIEKVQEGPTVIETPTIQGEDIESETSLELKEEVDQSSKDTEEHEHVLERDI
PQCETLKAEAVDTSTVEEAAILKTLETNISEPEAMHSETSLDLKVDKEQKEAETVKTVIFSNE(
-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017