Plant Circular RNA Database

Detail information of AT5G40450_circ_g.9

			
						 General Information
					
						CircRNA Name
						AT5G40450_circ_g.9
					
						ID in PlantcircBase
						ath_circ_041718
					
						Alias
						5:16186805-16190013
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr5: 16186805-16190013  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						find_circ; CIRI2
					
						Parent gene
						
							AT5G40450						
					
						Parent gene annotation
						
							unknown protein
							
						Parent gene strand
						-
					
						Alternative splicing
						
							AT5G40450_circ_g.1 AT5G40450_circ_g.2 AT5G40450_circ_g.3 5_circ_ag.4 AT5G40450_circ_g.5 AT5G40450_circ_g.6 AT5G40450_circ_g.7 AT5G40450_circ_g.8 AT5G40450_circ_g.10 AT5G40450_circ_g.11 AT5G40450_circ_g.12 AT5G40450_circ_g.13 AT5G40450_circ_g.14 AT5G40450_circ_g.15 AT5G40450_circ_g.16 AT5G40450_circ_g.17 AT5G40450_circ_g.18 AT5G40450_circ_g.19 AT5G40450_circ_g.20 AT5G40450_circ_g.21 AT5G40450_circ_g.22 AT5G40450_circ_g.23 AT5G40450_circ_g.24 AT5G40450_circ_g.25 AT5G40450_circ_g.26 AT5G40480_circ_g.1 AT5G40480_circ_g.2 AT5G40480_circ_g.3 AT5G40480_circ_g.4 AT5G40480_circ_g.5 AT5G40480_circ_g.6 AT5G40480_circ_g.7 AT5G40480_circ_g.8 AT5G40490_circ_g.1 AT5G40530_circ_g.1 AT5G40530_circ_g.2 AT5G40530_circ_g.3 AT5G40530_circ_g.4 AT5G40530_circ_g.5 AT5G40550_circ_g.1 AT5G40580_circ_g.1 AT5G40580_circ_g.2 AT5G40600_circ_g.1 AT5G40610_circ_g.1 AT5G40630_circ_g.1 AT5G40640_circ_g.1 AT5G40645_circ_g.1 AT5G40670_circ_g.1 AT5G40670_circ_g.2 AT5G40690_circ_g.1 AT5G40710_circ_g.1 AT5G40740_circ_g.1 AT5G40740_circ_g.2 						
					
						Support reads
						2
					
						Tissues
						flower
					
						Exon boundary  
						
							No-No							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						AT5G40450.1:2
AT5G40450.2:2

General Information
CircRNA Name	AT5G40450_circ_g.9
ID in PlantcircBase	ath_circ_041718
Alias	5:16186805-16190013
Organism	Arabidpsis thaliana
Position	chr5: 16186805-16190013 JBrowse»
Reference genome	TAIR10.38
Type	e-circRNA
Identification method	find_circ; CIRI2
Parent gene	AT5G40450
Parent gene annotation	unknown protein
Parent gene strand	-
Alternative splicing	AT5G40450_circ_g.1 AT5G40450_circ_g.2 AT5G40450_circ_g.3 5_circ_ag.4 AT5G40450_circ_g.5 AT5G40450_circ_g.6 AT5G40450_circ_g.7 AT5G40450_circ_g.8 AT5G40450_circ_g.10 AT5G40450_circ_g.11 AT5G40450_circ_g.12 AT5G40450_circ_g.13 AT5G40450_circ_g.14 AT5G40450_circ_g.15 AT5G40450_circ_g.16 AT5G40450_circ_g.17 AT5G40450_circ_g.18 AT5G40450_circ_g.19 AT5G40450_circ_g.20 AT5G40450_circ_g.21 AT5G40450_circ_g.22 AT5G40450_circ_g.23 AT5G40450_circ_g.24 AT5G40450_circ_g.25 AT5G40450_circ_g.26 AT5G40480_circ_g.1 AT5G40480_circ_g.2 AT5G40480_circ_g.3 AT5G40480_circ_g.4 AT5G40480_circ_g.5 AT5G40480_circ_g.6 AT5G40480_circ_g.7 AT5G40480_circ_g.8 AT5G40490_circ_g.1 AT5G40530_circ_g.1 AT5G40530_circ_g.2 AT5G40530_circ_g.3 AT5G40530_circ_g.4 AT5G40530_circ_g.5 AT5G40550_circ_g.1 AT5G40580_circ_g.1 AT5G40580_circ_g.2 AT5G40600_circ_g.1 AT5G40610_circ_g.1 AT5G40630_circ_g.1 AT5G40640_circ_g.1 AT5G40645_circ_g.1 AT5G40670_circ_g.1 AT5G40670_circ_g.2 AT5G40690_circ_g.1 AT5G40710_circ_g.1 AT5G40740_circ_g.1 AT5G40740_circ_g.2
Support reads	2
Tissues	flower
Exon boundary	No-No "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	AT5G40450.1:2 AT5G40450.2:2

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GCCTCTGGTTCACTAATATTGGTCTCCAAAGTCTTTAAGATCGCAGCTTCTTCGACTGTTGAAG
TATCTACCGCCTCAGCTTTAAGGGTCTCACATTGTGaaatcacatgctcttgctcctcagcaga
caatggagaagatgaaatcagaatttcctctctaggtaacacttgtgcaatctccctagtttcc
tcttgtac

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							AAATCACATGCTCTTGCTCCTCAGCAGACAATGGAGAAGATGAAATCAGAATTTCCTCTCTAGG
TAACACTTGTGCAATCTCCCTAGTTTCCTCTTGTACCTTTACCTCTTCTTTATGTTCCTCTTGC
AAATTGATTTCTTCTATTGGAAGAGATTTCCCTGCAAGACCGCTTTCTTCCTTGATTTTTTCAG
CTTCTCCACTTTTATCTCCGTGTAATCTTTTTGCTTCTAAGATATCAGAAACAAAATCTTTTTC
ATTTGATTCAACCACATCATCACCTTTCTTTTCTTCTTGATCTGCAGGCTCTTTTATCATGCTT
ACTTCCGATGATGCAGAATCATTGATTGCTCTCTCAGTCTCCAATGTAGTTTGGAGTTGTGTCA
AGATTCCAACAACTGGAAGAGTTGAGTAAGTCTCATCTCCATGCTCTGCCTCCTCTGTAGGATA
ATCATTTTCTAACCCAGCCACTTCAACATCCGTTTTCTTTGTACTTTCATCCTCAACCTGATCA
TCTGATTTTTCTGCTCCTTCGGCTTGTGATTCTTTTGGTTTTGTTTCTCCTACCTTCTCTTCTG
TTTCTGCAGAAACATGTCGTTCCTCTTGTGTGTTAGCTGCATAATCGCCTTCTTGTGGAGTCAC
TGGTTCGTCTTCCCCAGAAGCAAGCATGGAAACTGGAGCTTCAATGAATGATTCTTTTGGAACG
GTTTCCGTAGAAAAGATATCTTCAGCTTGTACCTTGTGTGTTTCCTTTGTTTCTTCTTCAAGAA
TTTCCTCAACTTGCTTTGGAGTTTGGTCATCCTTATCTGAAACTAAGGATGGAGTCTGATCTGC
TTGTGAAGTTCCAATTGGAAGAGTCTGATCAATAGTAGTTTCTGTTGCTTTGGCAGTCTCAGGA
ATTTCTTGGCTCTTCTCGTCCTTTGTCTCCTCTAACTTTGGAGCTTCATGGTTCACAAACTCTT
CTTCATGGTCCAAAGCCACTGTTCTCTCTGTTTCATTAATTTCTTCATTTCCTTTCTTTGCCTC
TGCAATCAGAGTCTCACTATCATTCTCCTCCAAGATTATTGGTGCGGTTGGAGTCTCGACATGT
GCATCCCTTATTTCATCTTCATGCTCTTTTGGTTTTGTTTCTCCTACACTCTCTTCTGTTTCCA
CAGAAATAGATCGTTCCTCTTGTATGTCATTTGTTTCTCTAACGTCATCTGCACAATTATCTTC
TTGAAGAGCCACTTTATCATCTTCCCTAGAAGCCAACATGGAAACTAGAGCTTCATCAGATGAT
TCTCTTGGAATAATTTCGGTAGGGAGGATTTCTCCAGCCTGTAACTTGTGTTCTTCCTTTGTTT
CTGACACTAACTGAGAGGACAGAGTATTATCTGCATCGGATGTTTCAACTGGAAGATTCCGTTC
ACTCGTAGCTTCTACATCGTGTGCTTCCTTTGGTTCTTCCTCATGAATCTCCTCAACCTTCTTA
GGACTCTGGTCATCTTGTTCTGACACTAATTCAGATGATAGAGTATTATCTGTATGTGATGTTT
CGATGGGAAGAGTCTGATCACTAGTAGCTTCAATTTCTTCGATGGTCTCAGAAATTTCTTGGCT
CTTGTCTTCTTTTGACTCCTCTGGCTTTGGAACTTCAAGTGTCCCAGACTCTTCTTGTTGCATG
CATACATCTTCTGATGTCTTTGAAGTCTGAGTTTCATTATCATTTTTCTCTGATAACATTGGCG
AGGTTGAAGAATCGACATGTTCATCCGGTTTATCATCTTCAGCTTCACTTGATTTTGTTTCTCC
TTTTTCTGTTGAAGTAACTTTTTCCTGCTCATCCAATGGCAATGCAACTGATGGAATATGAATT
TCATCGACATCCTCTTTCTGATCAACGGATGGAAGACTCAGATGTGTTGTTTCAGCAATGTCAA
GACCTCTCTCCCTCATATCTCCTATTGGTTCTGCATCCTTCACTTTTTCATCGTCTGTCTTCTC
GGAAACAGTCTCATGTTCTTTCTCCTCGGAAGATGATGGCAATGAGCTATGCGCTTCAACTATT
TCACCTGTTTCAAAACTTTTCTGGATCTTGTCTGCTACTTGTTCTTCCCCAATCTTTTCGGCTT
CAACAACGGTCTCATATTCTGGTCCCTCTGAAAGTGATGCAGACGAAACTTGTATAACTTCATT
AGATATTTCTTCAACAGGACTCTGCTGGTCATTAGAAACTTCTTCCTTCGTTGGTTCATGCTTG
TCTACTTGCTCTTCCTGCAACTTTGTTTCGTTTTCTTGCTCATTTGCCAGGCATAATTCTTCTT
GCTGGGGTTGTTCTCCGAGCTCCCTACTTTCTAGTACTGAAACTGCCTCATCTTTTGTGTCTAA
TCCATAAGAACCTTCCTCTCGACCTTCTTGATGCAATGTTACTTCTTCTTTTGGTTTATCTTCG
ATCTTCTCATCTATGGTTTTGCTTGTTTCCTCTTCAGAAGGAGTATCAAGAGATTGCTTCACCA
CTGATTCTACATCCAGAAGAGTTTGGTTGTGTGTGGTCTCATCTAATCCAGCACCTTCAACAAC
AGATGGAATTTCTTCAAATTTATCTCCGTTTTCTGTCTTCGAGACTAGAGATATATCAGGTTCA
TTTTCTTGATACTTCTCTGATTCTCCAGATTGTACATCAAGCATATTCACATCCTTCTCCTCAC
TGCTTTCGCCTTGAACAGTCTCCTTAGATTTTACCTCAACAGATTCTTCGCTTCCCTGGCTTTC
ATCTTTTATCTCTGAGCTACAAGGTTCGGTATGTTCACCAAATTCCTCTGCTTGAGCATCGGAA
GTTCCCACCTGTTGATTGAAAGAATCAATATTTTTGATGCAGAGAATCAAAAGACTTTATAGGC
AGAACCAACATAGTCAAAACTTGTAAATTTTAAGCTTTTCATAGTGTTCATTGTGTCTTAGTTC
TAACCATATCATCAATTCCACACACATAAAGTGCCAACGCAAGATAAAATCAATATCTATGGAG
ATCATATCTTTACCTCATTAGAAAAAATGACAGTCTTTACTGTTTCTGCTTCTTTTTGTTCTTT
GTCCACTTTCAGGTCCAGACTGGTTTCACTATGCATTGCCTCTGGTTCACTAATATTGGTCTCC
AAAGTCTTTAAGATCGCAGCTTCTTCGACTGTTGAAGTATCTACCGCCTCAGCTTTAAGGGTCT
CACATTGTG
						
					

			
		

Sequences
Splice junction sequence	GCCTCTGGTTCACTAATATTGGTCTCCAAAGTCTTTAAGATCGCAGCTTCTTCGACTGTTGAAG TATCTACCGCCTCAGCTTTAAGGGTCTCACATTGTGaaatcacatgctcttgctcctcagcaga caatggagaagatgaaatcagaatttcctctctaggtaacacttgtgcaatctccctagtttcc tcttgtac
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	AAATCACATGCTCTTGCTCCTCAGCAGACAATGGAGAAGATGAAATCAGAATTTCCTCTCTAGG TAACACTTGTGCAATCTCCCTAGTTTCCTCTTGTACCTTTACCTCTTCTTTATGTTCCTCTTGC AAATTGATTTCTTCTATTGGAAGAGATTTCCCTGCAAGACCGCTTTCTTCCTTGATTTTTTCAG CTTCTCCACTTTTATCTCCGTGTAATCTTTTTGCTTCTAAGATATCAGAAACAAAATCTTTTTC ATTTGATTCAACCACATCATCACCTTTCTTTTCTTCTTGATCTGCAGGCTCTTTTATCATGCTT ACTTCCGATGATGCAGAATCATTGATTGCTCTCTCAGTCTCCAATGTAGTTTGGAGTTGTGTCA AGATTCCAACAACTGGAAGAGTTGAGTAAGTCTCATCTCCATGCTCTGCCTCCTCTGTAGGATA ATCATTTTCTAACCCAGCCACTTCAACATCCGTTTTCTTTGTACTTTCATCCTCAACCTGATCA TCTGATTTTTCTGCTCCTTCGGCTTGTGATTCTTTTGGTTTTGTTTCTCCTACCTTCTCTTCTG TTTCTGCAGAAACATGTCGTTCCTCTTGTGTGTTAGCTGCATAATCGCCTTCTTGTGGAGTCAC TGGTTCGTCTTCCCCAGAAGCAAGCATGGAAACTGGAGCTTCAATGAATGATTCTTTTGGAACG GTTTCCGTAGAAAAGATATCTTCAGCTTGTACCTTGTGTGTTTCCTTTGTTTCTTCTTCAAGAA TTTCCTCAACTTGCTTTGGAGTTTGGTCATCCTTATCTGAAACTAAGGATGGAGTCTGATCTGC TTGTGAAGTTCCAATTGGAAGAGTCTGATCAATAGTAGTTTCTGTTGCTTTGGCAGTCTCAGGA ATTTCTTGGCTCTTCTCGTCCTTTGTCTCCTCTAACTTTGGAGCTTCATGGTTCACAAACTCTT CTTCATGGTCCAAAGCCACTGTTCTCTCTGTTTCATTAATTTCTTCATTTCCTTTCTTTGCCTC TGCAATCAGAGTCTCACTATCATTCTCCTCCAAGATTATTGGTGCGGTTGGAGTCTCGACATGT GCATCCCTTATTTCATCTTCATGCTCTTTTGGTTTTGTTTCTCCTACACTCTCTTCTGTTTCCA CAGAAATAGATCGTTCCTCTTGTATGTCATTTGTTTCTCTAACGTCATCTGCACAATTATCTTC TTGAAGAGCCACTTTATCATCTTCCCTAGAAGCCAACATGGAAACTAGAGCTTCATCAGATGAT TCTCTTGGAATAATTTCGGTAGGGAGGATTTCTCCAGCCTGTAACTTGTGTTCTTCCTTTGTTT CTGACACTAACTGAGAGGACAGAGTATTATCTGCATCGGATGTTTCAACTGGAAGATTCCGTTC ACTCGTAGCTTCTACATCGTGTGCTTCCTTTGGTTCTTCCTCATGAATCTCCTCAACCTTCTTA GGACTCTGGTCATCTTGTTCTGACACTAATTCAGATGATAGAGTATTATCTGTATGTGATGTTT CGATGGGAAGAGTCTGATCACTAGTAGCTTCAATTTCTTCGATGGTCTCAGAAATTTCTTGGCT CTTGTCTTCTTTTGACTCCTCTGGCTTTGGAACTTCAAGTGTCCCAGACTCTTCTTGTTGCATG CATACATCTTCTGATGTCTTTGAAGTCTGAGTTTCATTATCATTTTTCTCTGATAACATTGGCG AGGTTGAAGAATCGACATGTTCATCCGGTTTATCATCTTCAGCTTCACTTGATTTTGTTTCTCC TTTTTCTGTTGAAGTAACTTTTTCCTGCTCATCCAATGGCAATGCAACTGATGGAATATGAATT TCATCGACATCCTCTTTCTGATCAACGGATGGAAGACTCAGATGTGTTGTTTCAGCAATGTCAA GACCTCTCTCCCTCATATCTCCTATTGGTTCTGCATCCTTCACTTTTTCATCGTCTGTCTTCTC GGAAACAGTCTCATGTTCTTTCTCCTCGGAAGATGATGGCAATGAGCTATGCGCTTCAACTATT TCACCTGTTTCAAAACTTTTCTGGATCTTGTCTGCTACTTGTTCTTCCCCAATCTTTTCGGCTT CAACAACGGTCTCATATTCTGGTCCCTCTGAAAGTGATGCAGACGAAACTTGTATAACTTCATT AGATATTTCTTCAACAGGACTCTGCTGGTCATTAGAAACTTCTTCCTTCGTTGGTTCATGCTTG TCTACTTGCTCTTCCTGCAACTTTGTTTCGTTTTCTTGCTCATTTGCCAGGCATAATTCTTCTT GCTGGGGTTGTTCTCCGAGCTCCCTACTTTCTAGTACTGAAACTGCCTCATCTTTTGTGTCTAA TCCATAAGAACCTTCCTCTCGACCTTCTTGATGCAATGTTACTTCTTCTTTTGGTTTATCTTCG ATCTTCTCATCTATGGTTTTGCTTGTTTCCTCTTCAGAAGGAGTATCAAGAGATTGCTTCACCA CTGATTCTACATCCAGAAGAGTTTGGTTGTGTGTGGTCTCATCTAATCCAGCACCTTCAACAAC AGATGGAATTTCTTCAAATTTATCTCCGTTTTCTGTCTTCGAGACTAGAGATATATCAGGTTCA TTTTCTTGATACTTCTCTGATTCTCCAGATTGTACATCAAGCATATTCACATCCTTCTCCTCAC TGCTTTCGCCTTGAACAGTCTCCTTAGATTTTACCTCAACAGATTCTTCGCTTCCCTGGCTTTC ATCTTTTATCTCTGAGCTACAAGGTTCGGTATGTTCACCAAATTCCTCTGCTTGAGCATCGGAA GTTCCCACCTGTTGATTGAAAGAATCAATATTTTTGATGCAGAGAATCAAAAGACTTTATAGGC AGAACCAACATAGTCAAAACTTGTAAATTTTAAGCTTTTCATAGTGTTCATTGTGTCTTAGTTC TAACCATATCATCAATTCCACACACATAAAGTGCCAACGCAAGATAAAATCAATATCTATGGAG ATCATATCTTTACCTCATTAGAAAAAATGACAGTCTTTACTGTTTCTGCTTCTTTTTGTTCTTT GTCCACTTTCAGGTCCAGACTGGTTTCACTATGCATTGCCTCTGGTTCACTAATATTGGTCTCC AAAGTCTTTAAGATCGCAGCTTCTTCGACTGTTGAAGTATCTACCGCCTCAGCTTTAAGGGTCT CACATTGTG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.152603695

Conservation Information
Conserved circRNAs	NA
PMCS	0.152603695

			
						 Functional Information
					
						Coding potential
						NA
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	NA
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Philips et al., 2020

circRNA

Detail information of AT5G40450_circ_g.9

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