Detail information of Os01g0518500_circ_g.4


General Information
CircRNA Name Os01g0518500_circ_g.4
ID in PlantcircBase osa_circ_001959
Alias NA
Organism Oryza sativa
Position chr1: 18398238-18400732  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os01g0518500
Parent gene annotation Glycoside hydrolase, family 27 protein. (Os01t0518500-01);Glycos
ide hydrolase, family 27 protein. (Os01t0518500-02)
Parent gene strand -
Alternative splicing Os01g0518500_circ_g.2 Os01g0518500_circ_g.3 Os01g0518500_circ_g.5
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os01t0518500-02:5
Os01t0518500-01:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CATGTATGTATTTTCATCAACTATCCATGAAAAGGAATCATAGGAATTCCAGCCTCTTGGTGGA
AACTCAGCAAGTTGTTCATTAGCCTCGGAAGTGCCCctagacacgtcaaaatgtgaactaacat
ccttccagttgtcccaatcatcccctgttatcctgtacatgttaacatgttgactgatgttttt
ggctaatg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 807
Transcript exons: 18398238-18398401,18398477-18398538,18398694-18398868,18
400222-18400479,18400585-18400732
CTAGACACGTCAAAATGTGAACTAACATCCTTCCAGTTGTCCCAATCATCCCCTGTTATCCTGT
ACATGTTAACATGTTGACTGATGTTTTTGGCTAATGCTGGAGTCACTTCGGTTCCTGGTGAGAT
GGACAGGATGATGGGGCGGTCAAGCTCTGCCAAGAGCTCTGAAATAGTTATGATTTCTTTTGGG
CTGTAATCCGTACCGAAGATACAATCAACCTTCACAAAATCAACACCCCAATCAGCGTACTGTT
GATAAAGAGATCTTAGGAAGGCCTTTCCAGCTCCAATATCAGTATTTACACTCATAAATCCATG
TGGCATCCATGCACATGTTCTATGTGTAAGACCTATATCACGAGCTGTCCATTGCCGGCCATCC
TCTACGTAGGGTTTTCCCGTTTTAATGTCCAATATGGGTGTGTTTCCATTCACAGCCTGTAAAC
TTATCCCTTTCATTAAATGGATTCCGAATTTCAAGCCCATTCCATGCACCTTGTTCGCAAGTTG
ACTGAACCCTTTATCAATTCTGGATGATGGAAATCTTTGAAGATCAGGAAATGGCCGACCCCAC
TCATCAATGTTATCAAATCCATATGAATCTGTGTATGCCCCATGAACATACTTTCGGTACCAGA
GGTAATCAATAACTGCAAACTCATATCCATGTGGGAGCAATTTTTCTGCCAAGATCTCCGCATT
TTGCATGTATGTATTTTCATCAACTATCCATGAAAAGGAATCATAGGAATTCCAGCCTCTTGGT
GGAAACTCAGCAAGTTGTTCATTAGCCTCGGAAGTGCCC

Genomic sequence CTAGACACGTCAAAATGTGAACTAACATCCTTCCAGTTGTCCCAATCATCCCCTGTTATCCTGT
ACATGTTAACATGTTGACTGATGTTTTTGGCTAATGCTGGAGTCACTTCGGTTCCTGGTGAGAT
GGACAGGATGATGGGGCGGTCAAGCTCTGCCAAGAGCTGCAATTTAGAAATTAGCTTATTCGAA
TAGTGTAATAATTTGAAAGGACATCAACAGGATATGGGGCTACTAACCTCTGAAATAGTTATGA
TTTCTTTTGGGCTGTAATCCGTACCGAAGATACAATCAACCTTCACTGTGAACAGAACAGAATG
GTACAAATGAAACCATCAGAATAAATTTCAGTTTCGGTATGACATGAAAATGATCATCTACTGC
CTAATATATGATCTTTCTACACAGTCCTCACAGTTGTAATAACTAAACTGAAGAATTATGCTAT
AAGAATACCAAAATCAACACCCCAATCAGCGTACTGTTGATAAAGAGATCTTAGGAAGGCCTTT
CCAGCTCCAATATCAGTATTTACACTCATAAATCCATGTGGCATCCATGCACATGTTCTATGTG
TAAGACCTATATCACGAGCTGTCCATTGCCGGCCATCCTCTACGTAGGGTTTTCCCTGAAAAGG
GCCAACAGAACACACTTTGAACAACAAACAGCAGTTCAATGACTTATGTTTCTGGTCATTTTCT
TGCTGTAGTATTTCAACCCCCTTTCTTGCAATTAATTTGAAGAATTTTAGAGAAGTTCCTTTTT
TTCACAGCGAAGAGGAGTTCCATTTTGCAGGGAAAATAAACAGCCAAATATTTGAATCATCAAA
TAATAGCATAGCATTATTTGCACCCATAATGCATAATGGAGCAAATTAGTAATTTTCACTAATG
ATAATATGTTTGTCTGGAAGACTACAACAGGACATTGAAATCCAAAATGGTTATCCCATAACTA
CCAGAACACACATGTTTAAGCTATTTTACAGTATGATCTTAAAAACGTATTGGAGGATAAAGAT
TGGCTGCTGAATAGACATTCTACAACATAATGTTAACATGGATCAATAATAGGATAGCATTGTT
TACGCCCATAACACATAATGGAAAAAAATAGTAATTTCCTCCAATGATAAAATATGTCTTAATG
GAATGAAGCACAGTTCTCCTGCACTCTCAAGAAAAAAAAAGGATAAAATGTTTGTCTGGATGGC
TACAACAGGACATTGAAATCCTACATGACACTCAAAATTTGTGTAAATTGCTGGTAGACATCAT
AAAAACGTATCACAGCTGAAAGACACTCTAAAAAACTGGTAATCTGCTGGAGGACACTTTCGGC
TCAATTGGAGAGAGAAATTCTTCAAAAAGACAAGAATGCCCTTAGGGTCAAAAGCTTTTGAGGT
GAGACTGGAGCCAAGATGGAATATAATCTATACTAGTGATGTATTTGGGGTGATGACAAATTTA
AAGTTGCATAATTTCTATTTCTTCCCCTTAAAATCATGTTTGAAGCATTTGGTCTTAGGGTCAT
TCTCGTCTTTCTTAATAATTTATCAATCCAATTGAGCCAAAAGTGTCATCTAGCAAATTACCAG
TTTTTTAGGATGTCTTTCAGCCGTGACACGTTTTATCAATGTCTATCAGCAAATTACACAAAAT
TTGGATGTCCTATAGCAAAATTTGCCATAATGTTATGTTTATGCTATTTTATAATTTGATCTTA
AAATTGCATTGGAGGTTAAAGATTGACTGTTGTATGTACATTATATAACATATTATCTCCATCC
CAAAATATAAAGGATTTTGACAGTACAAATGCATAGCCAAAATCCCTTATATTTTAGAGCAGAG
GTATGGTAGTAACTTCAACAAAGGATCAATAAGAAAATTGAGGCAGTCTCAAAAAGTGGAGGAA
AAGCATAACTGCCAAAGTGGCTGTAGTTGTTATCCAACTCCATTTGAAGGAAGGAAAACATTAC
CGTTTTAATGTCCAATATGGGTGTGTTTCCATTCACAGCCTGTAAACTTATCCCTTTCATTAAA
TGGATTCCGAATTTCAAGCCCATTCCATGCACCTTGTTCGCAAGTTGACTGAACCCTTTATCAA
TTCTGGATGATGGAAATCTTTGAAGATCAGGAAATGGCCGACCCCACTCATCAATGTTATCAAA
TCCATATGAATCTGTGTATGCCCCATGAACATACTTTCGGTACCAGAGGTAATCAATAACTGCA
AACTACCCACCAATATGATGCAAAATAGTTAAAATGATGATAAAGTTTATATTTTTATATTCAT
TTTGCTATCAAATAAGAAACCGACCAGCAATTTGAATGGTTACCTCATATCCATGTGGGAGCAA
TTTTTCTGCCAAGATCTCCGCATTTTGCATGTATGTATTTTCATCAACTATCCATGAAAAGGAA
TCATAGGAATTCCAGCCTCTTGGTGGAAACTCAGCAAGTTGTTCATTAGCCTCGGAAGTGCCC
Conservation Information
Conserved circRNAs NA
PMCS 0.22196326
Functional Information
Coding potential Y
Potential coding position 18400637-18398240(-)
18398288-18400655(-)
Potential amino acid sequence MQNAEILAEKLLPHGYEFAVIDYLWYRKYVHGAYTDSYGFDNIDEWGRPFPDLQRFPSSRIDKG
FSQLANKVHGMGLKFGIHLMKGISLQAVNGNTPILDIKTGKPYVEDGRQWTARDIGLTHRTCAW
MPHGFMSVNTDIGAGKAFLRSLYQQYADWGVDFVKVDCIFGTDYSPKEIITISELLAELDRPII
LSISPGTEVTPALAKNISQHVNMYRITGDDWDNWKDVSSHFDVSRGTSEANEQLAEFPPRGWNS
YDSFSWIVDENTYMQNAEILAEKLLPHGYEFAVIDYLWYRKYVHGAYTDSYGFDNIDEWGRPFP
DLQRFPSSRIDKGFSQLANKVHGMGLKFGIHLMKGISLQAVNGNTPILDIKTGKPYVEDGRQWT
ARDIGLTHRTCAWMPHGFMSVNTDIGAGKAFLRSLYQQYADWGVDFVKVDCIFGTDYSPKEIIT
ISELLAELDRPIILSISPGTEVTPALAKNISQHVNMYRITGDDWDNWKDVSSHFDVSRGTSEAN
EQLAEFPPRGWNSYDSFSWIVDENTYMQNAEILAEKLLPHGYEFAVIDYLWYRKYVHGAYTDSY
GFDNIDEWGRPFPDLQRFPSSRIDKGFSQLANKVHGMGLKFGIHLMKGISLQAVNGNTPILDIK
TGKPYVEDGRQWTARDIGLTHRTCAWMPHGFMSVNTDIGAGKAFLRSLYQQYADWGVDFVKVDC
IFGTDYSPKEIITISELLAELDRPIILSISPGTEVTPALAKNISQHVNMYRITGDDWDNWKDVS
SHFDVSRGTSEANEQLAEFPPRGWNSYDSFSWIVDENTYMQNAEILAEKLLPHGYEFAVIDYLW
YRKYVHGAYTDSYGFDNIDEWGRPFPDLQRFPSSRIDKGFSQLANKVHGMGLKFGIHLMKGISL
QAVNGNTPILDIKTGKPYVEDGRQWTARDIGLTHRTCAWMPHGFMSVNTDIGAGKAFLRSLYQQ
YADWGVDFVKVDCIFGTDYSPKEIITISELLAELDRPIILSISPGTEVTPALAKNISQHVNMYR
ITGDDWDNWKDVSSHFDVS(-)
MIGTTGRMLVHILTCLGALPRLMNNLLSFHQEAGIPMIPFHG*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017