Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Os01g0518500_circ_g.4 |
| ID in PlantcircBase | osa_circ_001959 |
| Alias | NA |
| Organism | Oryza sativa |
| Position | chr1: 18398238-18400732 JBrowse» |
| Reference genome | IRGSP-1.0.38 |
| Type | e-circRNA |
| Identification method | CIRCexplorer |
| Parent gene | Os01g0518500 |
| Parent gene annotation |
Glycoside hydrolase, family 27 protein. (Os01t0518500-01);Glycos ide hydrolase, family 27 protein. (Os01t0518500-02) |
| Parent gene strand | - |
| Alternative splicing | Os01g0518500_circ_g.2 Os01g0518500_circ_g.3 Os01g0518500_circ_g.5 |
| Support reads | 1 |
| Tissues | shoot |
| Exon boundary | Yes-Yes |
| Splicing signals | CT-AC |
| Number of exons covered | Os01t0518500-02:5 Os01t0518500-01:5 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.22196326 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
18400637-18398240(-) 18398288-18400655(-) |
| Potential amino acid sequence |
MQNAEILAEKLLPHGYEFAVIDYLWYRKYVHGAYTDSYGFDNIDEWGRPFPDLQRFPSSRIDKG FSQLANKVHGMGLKFGIHLMKGISLQAVNGNTPILDIKTGKPYVEDGRQWTARDIGLTHRTCAW MPHGFMSVNTDIGAGKAFLRSLYQQYADWGVDFVKVDCIFGTDYSPKEIITISELLAELDRPII LSISPGTEVTPALAKNISQHVNMYRITGDDWDNWKDVSSHFDVSRGTSEANEQLAEFPPRGWNS YDSFSWIVDENTYMQNAEILAEKLLPHGYEFAVIDYLWYRKYVHGAYTDSYGFDNIDEWGRPFP DLQRFPSSRIDKGFSQLANKVHGMGLKFGIHLMKGISLQAVNGNTPILDIKTGKPYVEDGRQWT ARDIGLTHRTCAWMPHGFMSVNTDIGAGKAFLRSLYQQYADWGVDFVKVDCIFGTDYSPKEIIT ISELLAELDRPIILSISPGTEVTPALAKNISQHVNMYRITGDDWDNWKDVSSHFDVSRGTSEAN EQLAEFPPRGWNSYDSFSWIVDENTYMQNAEILAEKLLPHGYEFAVIDYLWYRKYVHGAYTDSY GFDNIDEWGRPFPDLQRFPSSRIDKGFSQLANKVHGMGLKFGIHLMKGISLQAVNGNTPILDIK TGKPYVEDGRQWTARDIGLTHRTCAWMPHGFMSVNTDIGAGKAFLRSLYQQYADWGVDFVKVDC IFGTDYSPKEIITISELLAELDRPIILSISPGTEVTPALAKNISQHVNMYRITGDDWDNWKDVS SHFDVSRGTSEANEQLAEFPPRGWNSYDSFSWIVDENTYMQNAEILAEKLLPHGYEFAVIDYLW YRKYVHGAYTDSYGFDNIDEWGRPFPDLQRFPSSRIDKGFSQLANKVHGMGLKFGIHLMKGISL QAVNGNTPILDIKTGKPYVEDGRQWTARDIGLTHRTCAWMPHGFMSVNTDIGAGKAFLRSLYQQ YADWGVDFVKVDCIFGTDYSPKEIITISELLAELDRPIILSISPGTEVTPALAKNISQHVNMYR ITGDDWDNWKDVSSHFDVS(-) MIGTTGRMLVHILTCLGALPRLMNNLLSFHQEAGIPMIPFHG*(-) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Chu et al., 2017 |