Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os01g0518500_circ_g.4 |
ID in PlantcircBase | osa_circ_001959 |
Alias | NA |
Organism | Oryza sativa |
Position | chr1: 18398238-18400732 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os01g0518500 |
Parent gene annotation |
Glycoside hydrolase, family 27 protein. (Os01t0518500-01);Glycos ide hydrolase, family 27 protein. (Os01t0518500-02) |
Parent gene strand | - |
Alternative splicing | Os01g0518500_circ_g.2 Os01g0518500_circ_g.3 Os01g0518500_circ_g.5 |
Support reads | 1 |
Tissues | shoot |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os01t0518500-02:5 Os01t0518500-01:5 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.22196326 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
18400637-18398240(-) 18398288-18400655(-) |
Potential amino acid sequence |
MQNAEILAEKLLPHGYEFAVIDYLWYRKYVHGAYTDSYGFDNIDEWGRPFPDLQRFPSSRIDKG FSQLANKVHGMGLKFGIHLMKGISLQAVNGNTPILDIKTGKPYVEDGRQWTARDIGLTHRTCAW MPHGFMSVNTDIGAGKAFLRSLYQQYADWGVDFVKVDCIFGTDYSPKEIITISELLAELDRPII LSISPGTEVTPALAKNISQHVNMYRITGDDWDNWKDVSSHFDVSRGTSEANEQLAEFPPRGWNS YDSFSWIVDENTYMQNAEILAEKLLPHGYEFAVIDYLWYRKYVHGAYTDSYGFDNIDEWGRPFP DLQRFPSSRIDKGFSQLANKVHGMGLKFGIHLMKGISLQAVNGNTPILDIKTGKPYVEDGRQWT ARDIGLTHRTCAWMPHGFMSVNTDIGAGKAFLRSLYQQYADWGVDFVKVDCIFGTDYSPKEIIT ISELLAELDRPIILSISPGTEVTPALAKNISQHVNMYRITGDDWDNWKDVSSHFDVSRGTSEAN EQLAEFPPRGWNSYDSFSWIVDENTYMQNAEILAEKLLPHGYEFAVIDYLWYRKYVHGAYTDSY GFDNIDEWGRPFPDLQRFPSSRIDKGFSQLANKVHGMGLKFGIHLMKGISLQAVNGNTPILDIK TGKPYVEDGRQWTARDIGLTHRTCAWMPHGFMSVNTDIGAGKAFLRSLYQQYADWGVDFVKVDC IFGTDYSPKEIITISELLAELDRPIILSISPGTEVTPALAKNISQHVNMYRITGDDWDNWKDVS SHFDVSRGTSEANEQLAEFPPRGWNSYDSFSWIVDENTYMQNAEILAEKLLPHGYEFAVIDYLW YRKYVHGAYTDSYGFDNIDEWGRPFPDLQRFPSSRIDKGFSQLANKVHGMGLKFGIHLMKGISL QAVNGNTPILDIKTGKPYVEDGRQWTARDIGLTHRTCAWMPHGFMSVNTDIGAGKAFLRSLYQQ YADWGVDFVKVDCIFGTDYSPKEIITISELLAELDRPIILSISPGTEVTPALAKNISQHVNMYR ITGDDWDNWKDVSSHFDVS(-) MIGTTGRMLVHILTCLGALPRLMNNLLSFHQEAGIPMIPFHG*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |