Detail information of Os01g0518500_circ_g.2


General Information
CircRNA Name Os01g0518500_circ_g.2
ID in PlantcircBase osa_circ_001957
Alias NA
Organism Oryza sativa
Position chr1: 18397981-18398538  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, PcircRNA_finder
Parent gene Os01g0518500
Parent gene annotation Glycoside hydrolase, family 27 protein. (Os01t0518500-01);Glycos
ide hydrolase, family 27 protein. (Os01t0518500-02)
Parent gene strand -
Alternative splicing Os01g0518500_circ_g.3 Os01g0518500_circ_g.4 Os01g0518500_circ_g.5
Support reads 2
Tissues root, seed
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os01t0518500-01:3
Os01t0518500-02:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AATTTGAAAGGACATCAACAGGATATGGGGCTACTAACCTCTGAAATAGTTATGATTTCTTTTG
GGCTGTAATCCGTACCGAAGATACAATCAACCTTCActgcatttgtaagccagccaaatgggag
catgtctaaatctggccaagatcttcctcgtaatcctatggccccaattttatttgcagcagca
aaggaact
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 324
Transcript exons: 18397981-18398078,18398238-18398401,18398477-18398538
CTGCATTTGTAAGCCAGCCAAATGGGAGCATGTCTAAATCTGGCCAAGATCTTCCTCGTAATCC
TATGGCCCCAATTTTATTTGCAGCAGCAAAGGAACTAGACACGTCAAAATGTGAACTAACATCC
TTCCAGTTGTCCCAATCATCCCCTGTTATCCTGTACATGTTAACATGTTGACTGATGTTTTTGG
CTAATGCTGGAGTCACTTCGGTTCCTGGTGAGATGGACAGGATGATGGGGCGGTCAAGCTCTGC
CAAGAGCTCTGAAATAGTTATGATTTCTTTTGGGCTGTAATCCGTACCGAAGATACAATCAACC
TTCA

Genomic sequence CTGCATTTGTAAGCCAGCCAAATGGGAGCATGTCTAAATCTGGCCAAGATCTTCCTCGTAATCC
TATGGCCCCAATTTTATTTGCAGCAGCAAAGGAACTGTGTACAATATGTAATGGGGTAAGAAGA
AATGATTTATTTACTAGAAAAATAATCAAGCGTTTTTAGATAATGAGAAAAAAAGCAAGTTAAA
GGTTAATTAATGGATTGAATTCTTGCAGTCAGAAACTGCAGACAGAGCATATTGGCTCAATTTA
CCTAGACACGTCAAAATGTGAACTAACATCCTTCCAGTTGTCCCAATCATCCCCTGTTATCCTG
TACATGTTAACATGTTGACTGATGTTTTTGGCTAATGCTGGAGTCACTTCGGTTCCTGGTGAGA
TGGACAGGATGATGGGGCGGTCAAGCTCTGCCAAGAGCTGCAATTTAGAAATTAGCTTATTCGA
ATAGTGTAATAATTTGAAAGGACATCAACAGGATATGGGGCTACTAACCTCTGAAATAGTTATG
ATTTCTTTTGGGCTGTAATCCGTACCGAAGATACAATCAACCTTCA
Conservation Information
Conserved circRNAs osi_circ_009653
PMCS 0.293002748
Functional Information
Coding potential Y
Potential coding position 18398307-18397983(-)
Potential amino acid sequence MYRITGDDWDNWKDVSSHFDVSSSFAAANKIGAIGLRGRSWPDLDMLPFGWLTNAVKVDCIFGT
DYSPKEIITISELLAELDRPIILSISPGTEVTPALAKNISQHVNMYRITGDDWDNWKDVSSHFD
VSSSFAAANKIGAIGLRGRSWPDLDMLPFGWLTNAVKVDCIFGTDYSPKEIITISELLAELDRP
IILSISPGTEVTPALAKNISQHVNMYRITGDDWDNWKDVSSHFDVSSSFAAANKIGAIGLRGRS
WPDLDMLPFGWLTNAVKVDCIFGTDYSPKEIITISELLAELDRPIILSISPGTEVTPALAKNIS
QHVNMYRITGDDWDNWKDVSSHFDVSSSFAAANKIGAIGLRGRSWPDLDMLPFGWLTNA(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017