Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os01g0518500_circ_g.2 |
ID in PlantcircBase | osa_circ_001957 |
Alias | NA |
Organism | Oryza sativa |
Position | chr1: 18397981-18398538 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, PcircRNA_finder |
Parent gene | Os01g0518500 |
Parent gene annotation |
Glycoside hydrolase, family 27 protein. (Os01t0518500-01);Glycos ide hydrolase, family 27 protein. (Os01t0518500-02) |
Parent gene strand | - |
Alternative splicing | Os01g0518500_circ_g.3 Os01g0518500_circ_g.4 Os01g0518500_circ_g.5 |
Support reads | 2 |
Tissues | root, seed |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os01t0518500-01:3 Os01t0518500-02:3 |
Conservation Information | |
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Conserved circRNAs | osi_circ_009653 |
PMCS | 0.293002748 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
18398307-18397983(-) |
Potential amino acid sequence |
MYRITGDDWDNWKDVSSHFDVSSSFAAANKIGAIGLRGRSWPDLDMLPFGWLTNAVKVDCIFGT DYSPKEIITISELLAELDRPIILSISPGTEVTPALAKNISQHVNMYRITGDDWDNWKDVSSHFD VSSSFAAANKIGAIGLRGRSWPDLDMLPFGWLTNAVKVDCIFGTDYSPKEIITISELLAELDRP IILSISPGTEVTPALAKNISQHVNMYRITGDDWDNWKDVSSHFDVSSSFAAANKIGAIGLRGRS WPDLDMLPFGWLTNAVKVDCIFGTDYSPKEIITISELLAELDRPIILSISPGTEVTPALAKNIS QHVNMYRITGDDWDNWKDVSSHFDVSSSFAAANKIGAIGLRGRSWPDLDMLPFGWLTNA(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |