Detail information of BGIOSGA026886_circ_g.11


General Information
CircRNA Name BGIOSGA026886_circ_g.11
ID in PlantcircBase osi_circ_017956
Alias Chr08:23414572_23418795(MH63RS2), Chr08:23739393_23743616(ZS97RS2), Chr08:23414572_23418795(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr8: 23505066-23509289  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2, CIRI2, CIRCexplorer2, CIRI2, CIRCexplorer2
Parent gene BGIOSGA026886
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA026886_circ_g.1 BGIOSGA026886_circ_g.2 BGIOSGA026886_circ_g.3 BGIOSGA026886_circ_g.4 BGIOSGA026886_circ_g.5 BGIOSGA026886_circ_g.6 BGIOSGA026886_circ_g.7 BGIOSGA026886_circ_g.8 BGIOSGA026886_circ_g.9 BGIOSGA026886_circ_g.10 BGIOSGA026886_circ_g.12 BGIOSGA026886_circ_g.13 BGIOSGA026886_circ_g.14 BGIOSGA026886_circ_g.15
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-AA
Number of exons covered BGIOSGA026886-TA:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTTCTTTATCGAACGAAGAAACTGGAGTACCATTTACAGAAGCAATTCCAAGTGGAACCAGGCT
TTTGTAAGACGTTTCTTGAGCAAGATATTTCAAAACcctgtgctgcccacttaggtaaggtcat
caacacttcaaaagtagaagctccagaagccacggacattgaagtcaaaggctcggctgaagat
ggtctatc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGTGCTGCCCACTTAGGTAAGGTCATCAACACTTCAAAAGTAGAAGCTCCAGAAGCCACGGA
CATTGAAGTCAAAGGCTCGGCTGAAGATGGTCTATCATCCTCGCTAACCGAGACAACACGAACT
AACCGGCGGGTCTCAATAAGTTCTTTCTTAATATGCTTCTCCAAAAGCTACATAAACAGCATAT
GACATTGCAAATATCAGACTGAAGACTAAATAATGCTCCATAAATACAGAAACCATACCTCGTC
ATCAAAACAGGTTTGTGGACTGCCAGAAAGAAGCAGTGACACGTGTGAAGAACTGGATGTAGTG
ATATCACAACATATTGTAACCACCCCGTCTAACAGAGCTGAATCAACATGAAGAGGAGGAGCAG
CGCTGCAAAGAGAAATATTGTGAGCAGAAACAAGCTAAACATTATATAGTAATCATGCAAGCAA
CGATGCAGAACTGCAAATAAGAATAAGAAGCACAACTTAAAATATGATTAAAAAAGGATACAGG
TTAAATACTCTATCGCGCAGTAGTTTACATTTTACACACCAATAAAAGCATTTAATTTGTGTTA
CCATTAAGTTTTGTCTTTAGTCTATATGGAAATGTAACCTCAGTTAACCTCTAAATTATAGCAG
CAAAATACAGGTTAGCTCATTTGATATATCACCAATTTAAGCTTCAAATATTTTTGTGGCATAG
AAAATTACGATATGATTGCGACATGAGCAATAGTGTTTAAGACACAACAGGTGGCGAGATATTG
AATATGTATTATACAGCACACATAACTCACACATGAGCAATAGTGTTTAAGACACAGATGCAAA
CATAACTCACACATGAAACAATAGTGTTTAAGACACAACAGGTTGCAAGGTATTGAATATGTAA
TATACAGCAGCTGAAGATACCTGACTCTATCCTGGAGTTTGCACCACCGAAACTGAAAAGAGAG
AAGAAAATCAAACATTAAAAAAAGGCCCTATCAACAATTTTACTACTTGCATCATTTTTCTCAT
GCAGTTTAATAGACAAGAATGAATTGAGACTGTGCAGTATGTGCCAAATTATCTTGTTCCTAAA
TTCATGGTACATAAAATTTGCATACAATGGTGCTAGCAAAATACCGGTGTATTGCAACAATCAA
CAAATATACAAGTTCTAATATTAAAATTTTCATATATTTTATGAAAAAAACATATATATTTGCA
AATCCACATCAATCAGAAAATAAATCCACAAATTAGAAGATCCCACCAAACAAAAGAGGAGGTG
GTGGGATGGCAGACACACCAATCACCACCACCACTACTAAGTTCTTAGATGTGGGTATGCTGCA
TAGTCTAAAATGAAAACTTACGATTCAGAAAACGAGACTATGACTAATCTACAGGAAGCTTCAC
TCCATAACCATGCAAGTATAGACTTTGGAACCTAGCCCCACCAGCTTGTATAAGCTGCTTACAA
GTAGCCCGTTACTTAGGATGCAACAATCTTTATGATTTGTAAGTTAGCATAATAGCATCACGTA
CTTCATTACTCCAATAACCTAGCATTTCTACAAAATAGGTCTCTGGGTAATACTCCATTCAGAA
CTCAGCACTAATTAGATGTAGAAAATAAAAAGCAGCAACATTGATTGAACACATACTAGAAGAA
GATTTGACACATACTTCAATATTGAGAAGAGCATTCAAACCATCCTCTACTGAGTTCAATACAG
ATGAATCCTGTAAAACAGATGGAAGTACAATCATTGATTTGGAATAAGAAAAATTACCATATTT
TAGAATAAAAATCTCGGCATGATCACTTTAACTTACAGGGGTGCAATGTGCTCCACAAATAAGA
AGCTTTAAGTGCACATCTTCATCGTATATCTTTATGTCTGGAAAATATTCAGAGGTATCTTCTT
CCTCGGCCATTTTGCTTCCAGGAGGGGTCATATATATCCTTGGAGCATCCCCAAGTAGATGAGG
CCCAAGCATAAGACATTGCACTTCATTATTTCTTACACAGTATTGTTCAAAAGAAGCATATGCA
AGCTGAAATGCATCCCATGCATGGCTGCAGGAGCTACAAACAGGAATACAGAATTATTGGATAA
AGAAAAAAAAACTTAATGGCTTAAAATATATTCAACAAATGCAAGATGGATACAAGATACCTCT
GTACAACTGACAATAAGGAATGGCGAAAATGAGATGCCGCATAGGATGATAATGAATATCTCCA
ATACATTATATATGAAATACCCTAGCAATGAAAGAGTATAAAAAATACAAATTTGAAATTAGAA
ATAAGATTCCAAAGTAATAACAGAGTTGGAATAGTATTTTGGGGAAAAAAAAGCTTAGTAAAAC
TGCCAAGAAAATTGTAAGTTAGTAATCAGCGTGTGGGAAAATGGACAGTAATTGCAGATATTAA
AAGCATATCTCTACTATTATAAAAATTGACGATGTTTTTGCCGGTGCTTTGGTACGTCATTTAT
GTATGAGTCGGTTTTCAAGTTCGTTCACTTTTGGAAATACATATCCGTATTTGAATCGTTTATT
AAGTTCATTTGCTTTTGGAAATAAAGAAGAGTGATATAGGAAATCTCTTTTAAAAAGCTCGCAT
GCTAACTTGAGATGATCGGACTCTAATTACAGCTCATGATTTTAAGCGAATTTCCACAGTAAAT
TTCACCTTAATTAAACCGTATAACAATAATAAGATTAAAATAGCATCCACCTGTCGCAACGCAG
GGGCATTTTTTCTAGTAGTTATATAAAATTACCATCAATAGAACCTCACTATGCCAGTCAAAAC
AAGTTAAACAAATGCAGTTTAGTAATTGTTCTATAGAACAAGTTCATTTAGGCATGATTGCTAA
AGCTTACAAGTAGCCAGGGTGCATAGTGCTCCACAAATAAGAAGCTTCATGTTCACATCTTCTT
CATATGGAGTATATCTTTATGGCTGAAAAATATTCAGAGCTATCTCCTTCCTCAGTCATTACGT
TTTCAGGAGGGGAGATATTTATCCTTGGAGTACCTCATTATTTATTACACAGTACAGTCGAAAA
GAAGCATGTGCAAGCTGAAATGCATCCCATGTAGCGCTGCAGAGCTACAAACAAACAGGAATAC
TCAATTATTGGATGAAAAAACAAAACTAAATGACTTACACTACATTAAACAAATGCAAGACTGA
TACGGTACCTCTGGCAAACTGACACCGAGACCAAGGCATGGCAAAAATGAGATGCTGCATAGGA
TAAGAATGGATTTCTCCAATATATTACATATATGGAATCACATGGGAATGAAAGTGTCAAAAAC
ACAAATTCCAAAAAAATGAAAGTATAGCAATCATCTTTTCAAAAATGAATAGCAATTGCTCCTT
ACAAGCATATAATGATATAAAAAGAGAAATTCCAAGAAATGTTATTGACAAGGACCTAATCCCA
TTAGAATCTTAATTAACCCTACTGCCGTTACTAATAAGAGATTTTCCCATAGTAATAATTTACA
GGAGTGTTCAACGTTTTGGCTCTAACAAGTTGAACTATGGGTGATAAGCTATAGAGAATTGAAT
GAAGCAACCAAAAAAATGATAAGAAATTTAGAAGCCTAAGCTAGAAAATACACTACAATGAAAA
AAAAAACATCTCTAATATTAACTTTCAAGATTCAAATTTTGGTTGCGGTTAACAAACCAACAAC
CGTACAATGAGAATCACACAAAAAACCAAGACATGTTCACACAAAAAAAATTTGGATTCGCTCA
ACATAGAGCCTCGCCCTTGCTATGCTTGTTAATGTGCAAGTGAGTTGTGCATTCTCTCAACATT
CAGCATTGACACCACCTTTGCACAACTACAAATTGCCGTTGCCCTTGTATCATTCACCTAGCTG
AAAAGAACGTGAAAAACAATAGGTTAATCCATTTCATAAGATGTTTCTAGTCCACTCCAACTCC
ATTTGCACTAAGAATCACCTGGTTTTGACACAATATTTCCCTTCACTCTGTCCTTCGCAAGGGA
TGCAGACCATCTTGGCAGATGGTGATATAGACCACTTCCAATAGCTTCATCTTCATCTTGGTTT
GTGTAAAAGAAAAGAAGCCGATCCACATCTTCTTTATCGAACGAAGAAACTGGAGTACCATTTA
CAGAAGCAATTCCAAGTGGAACCAGGCTTTTGTAAGACGTTTCTTGAGCAAGATATTTCAAAAC
Conservation Information
Conserved circRNAs osa_circ_037257 osa_circ_037256
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021