Detail information of BGIOSGA026886_circ_g.10


General Information
CircRNA Name BGIOSGA026886_circ_g.10
ID in PlantcircBase osi_circ_017955
Alias Chr08:23414204_23418472(MH63RS2), Chr08:23739025_23743293(ZS97RS2), Chr08:23414204_23418472(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr8: 23504698-23508966  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ie-circRNA
Identification method CIRCexplorer2, CIRCexplorer2, CIRCexplorer2
Parent gene BGIOSGA026886
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA026886_circ_g.1 BGIOSGA026886_circ_g.2 BGIOSGA026886_circ_g.3 BGIOSGA026886_circ_g.4 BGIOSGA026886_circ_g.5 BGIOSGA026886_circ_g.6 BGIOSGA026886_circ_g.7 BGIOSGA026886_circ_g.8 BGIOSGA026886_circ_g.9 BGIOSGA026886_circ_g.11 BGIOSGA026886_circ_g.12 BGIOSGA026886_circ_g.13 BGIOSGA026886_circ_g.14 BGIOSGA026886_circ_g.15
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   CT-CA
Number of exons covered BGIOSGA026886-TA:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTGTTAATGTGCAAGTGAGTTGTGCATTCTCTCAACATTCAGCATTGACACCACCTTTGCACAA
CTACAAATTGCCGTTGCCCTTGTATCATTCACCTAGcctggttttgacacaaaatttctcttca
ctctgtccttcgcaagggatgcagaccatcttggcagatggtgatatagaccatttccaatagc
ttcatctt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGGTTTTGACACAAAATTTCTCTTCACTCTGTCCTTCGCAAGGGATGCAGACCATCTTGGCA
GATGGTGATATAGACCATTTCCAATAGCTTCATCTTCATCTTAGTTTGTGCAAAAGAAAAGAAG
CCGATCCACATCTTCTTTATCGAACGAAGAAACTGGAGTACCATTTACAGAAGCAATTCCAAGT
GGAACCAGGCTTTTGTAAGACGTTTCTTGAGCAAGATATTTCAAAACCTACACAATTCAAACAA
ATCTTTAGTTGTCAATATATATTGAGTTTAGCAGTGGATAAATTGTCAGTATATCACACATGTC
ACCAAGCTGTCTAATCAGTTTCATTTAAACTTTTCTGAAGAAAATTAACCTGTGCTGCCCACTT
AGGTAAGGTCATCAACACTTCAAAAGTAGAAGCTCCAGAAGCCACGGACATTGAAGTCAAAGGC
TCGGCTGAAGATGGTCTATCATCCTCGCTAACCGAGACAACACGAACTAACCGGCGGGTCTCAA
TAAGTTCTTTCTTAATATGCTTCTCCAAAAGCTACATAAACAGCATATGACATTGCAAATATCA
GACTGAAGACTAAATAATGCTCCATAAATACAGAAACCATACCTCGTCATCAAAACAGGTTTGT
GGACTGCCAGAAAGAAGCAGTGACACGTGTGAAGAACTGGATGTAGTGATATCACAACATATTG
TAACCACCCCGTCTAACAGAGCTGAATCAACATGAAGAGGAGGAGCAGCGCTGCAAAGAGAAAT
ATTGTGAGCAGAAACAAGCTAAACATTATATAGTAATCATGCAAGCAACGATGCAGAACTGCAA
ATAAGAATAAGAAGCACAACTTAAAATATGATTAAAAAAGGATACAGGTTAAATACTCTATCGC
GCAGTAGTTTACATTTTACACACCAATAAAAGCATTTAATTTGTGTTACCATTAAGTTTTGTCT
TTAGTCTATATGGAAATGTAACCTCAGTTAACCTCTAAATTATAGCAGCAAAATACAGGTTAGC
TCATTTGATATATCACCAATTTAAGCTTCAAATATTTTTGTGGCATAGAAAATTACGATATGAT
TGCGACATGAGCAATAGTGTTTAAGACACAACAGGTGGCGAGATATTGAATATGTATTATACAG
CACACATAACTCACACATGAGCAATAGTGTTTAAGACACAGATGCAAACATAACTCACACATGA
AACAATAGTGTTTAAGACACAACAGGTTGCAAGGTATTGAATATGTAATATACAGCAGCTGAAG
ATACCTGACTCTATCCTGGAGTTTGCACCACCGAAACTGAAAAGAGAGAAGAAAATCAAACATT
AAAAAAAGGCCCTATCAACAATTTTACTACTTGCATCATTTTTCTCATGCAGTTTAATAGACAA
GAATGAATTGAGACTGTGCAGTATGTGCCAAATTATCTTGTTCCTAAATTCATGGTACATAAAA
TTTGCATACAATGGTGCTAGCAAAATACCGGTGTATTGCAACAATCAACAAATATACAAGTTCT
AATATTAAAATTTTCATATATTTTATGAAAAAAACATATATATTTGCAAATCCACATCAATCAG
AAAATAAATCCACAAATTAGAAGATCCCACCAAACAAAAGAGGAGGTGGTGGGATGGCAGACAC
ACCAATCACCACCACCACTACTAAGTTCTTAGATGTGGGTATGCTGCATAGTCTAAAATGAAAA
CTTACGATTCAGAAAACGAGACTATGACTAATCTACAGGAAGCTTCACTCCATAACCATGCAAG
TATAGACTTTGGAACCTAGCCCCACCAGCTTGTATAAGCTGCTTACAAGTAGCCCGTTACTTAG
GATGCAACAATCTTTATGATTTGTAAGTTAGCATAATAGCATCACGTACTTCATTACTCCAATA
ACCTAGCATTTCTACAAAATAGGTCTCTGGGTAATACTCCATTCAGAACTCAGCACTAATTAGA
TGTAGAAAATAAAAAGCAGCAACATTGATTGAACACATACTAGAAGAAGATTTGACACATACTT
CAATATTGAGAAGAGCATTCAAACCATCCTCTACTGAGTTCAATACAGATGAATCCTGTAAAAC
AGATGGAAGTACAATCATTGATTTGGAATAAGAAAAATTACCATATTTTAGAATAAAAATCTCG
GCATGATCACTTTAACTTACAGGGGTGCAATGTGCTCCACAAATAAGAAGCTTTAAGTGCACAT
CTTCATCGTATATCTTTATGTCTGGAAAATATTCAGAGGTATCTTCTTCCTCGGCCATTTTGCT
TCCAGGAGGGGTCATATATATCCTTGGAGCATCCCCAAGTAGATGAGGCCCAAGCATAAGACAT
TGCACTTCATTATTTCTTACACAGTATTGTTCAAAAGAAGCATATGCAAGCTGAAATGCATCCC
ATGCATGGCTGCAGGAGCTACAAACAGGAATACAGAATTATTGGATAAAGAAAAAAAAACTTAA
TGGCTTAAAATATATTCAACAAATGCAAGATGGATACAAGATACCTCTGTACAACTGACAATAA
GGAATGGCGAAAATGAGATGCCGCATAGGATGATAATGAATATCTCCAATACATTATATATGAA
ATACCCTAGCAATGAAAGAGTATAAAAAATACAAATTTGAAATTAGAAATAAGATTCCAAAGTA
ATAACAGAGTTGGAATAGTATTTTGGGGAAAAAAAAGCTTAGTAAAACTGCCAAGAAAATTGTA
AGTTAGTAATCAGCGTGTGGGAAAATGGACAGTAATTGCAGATATTAAAAGCATATCTCTACTA
TTATAAAAATTGACGATGTTTTTGCCGGTGCTTTGGTACGTCATTTATGTATGAGTCGGTTTTC
AAGTTCGTTCACTTTTGGAAATACATATCCGTATTTGAATCGTTTATTAAGTTCATTTGCTTTT
GGAAATAAAGAAGAGTGATATAGGAAATCTCTTTTAAAAAGCTCGCATGCTAACTTGAGATGAT
CGGACTCTAATTACAGCTCATGATTTTAAGCGAATTTCCACAGTAAATTTCACCTTAATTAAAC
CGTATAACAATAATAAGATTAAAATAGCATCCACCTGTCGCAACGCAGGGGCATTTTTTCTAGT
AGTTATATAAAATTACCATCAATAGAACCTCACTATGCCAGTCAAAACAAGTTAAACAAATGCA
GTTTAGTAATTGTTCTATAGAACAAGTTCATTTAGGCATGATTGCTAAAGCTTACAAGTAGCCA
GGGTGCATAGTGCTCCACAAATAAGAAGCTTCATGTTCACATCTTCTTCATATGGAGTATATCT
TTATGGCTGAAAAATATTCAGAGCTATCTCCTTCCTCAGTCATTACGTTTTCAGGAGGGGAGAT
ATTTATCCTTGGAGTACCTCATTATTTATTACACAGTACAGTCGAAAAGAAGCATGTGCAAGCT
GAAATGCATCCCATGTAGCGCTGCAGAGCTACAAACAAACAGGAATACTCAATTATTGGATGAA
AAAACAAAACTAAATGACTTACACTACATTAAACAAATGCAAGACTGATACGGTACCTCTGGCA
AACTGACACCGAGACCAAGGCATGGCAAAAATGAGATGCTGCATAGGATAAGAATGGATTTCTC
CAATATATTACATATATGGAATCACATGGGAATGAAAGTGTCAAAAACACAAATTCCAAAAAAA
TGAAAGTATAGCAATCATCTTTTCAAAAATGAATAGCAATTGCTCCTTACAAGCATATAATGAT
ATAAAAAGAGAAATTCCAAGAAATGTTATTGACAAGGACCTAATCCCATTAGAATCTTAATTAA
CCCTACTGCCGTTACTAATAAGAGATTTTCCCATAGTAATAATTTACAGGAGTGTTCAACGTTT
TGGCTCTAACAAGTTGAACTATGGGTGATAAGCTATAGAGAATTGAATGAAGCAACCAAAAAAA
TGATAAGAAATTTAGAAGCCTAAGCTAGAAAATACACTACAATGAAAAAAAAAACATCTCTAAT
ATTAACTTTCAAGATTCAAATTTTGGTTGCGGTTAACAAACCAACAACCGTACAATGAGAATCA
CACAAAAAACCAAGACATGTTCACACAAAAAAAATTTGGATTCGCTCAACATAGAGCCTCGCCC
TTGCTATGCTTGTTAATGTGCAAGTGAGTTGTGCATTCTCTCAACATTCAGCATTGACACCACC
TTTGCACAACTACAAATTGCCGTTGCCCTTGTATCATTCACCTAG
Conservation Information
Conserved circRNAs osa_circ_037261
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021