Detail information of Os02g0224200_circ_g.7


General Information
CircRNA Name Os02g0224200_circ_g.7
ID in PlantcircBase osa_circ_013927
Alias NA
Organism Oryza sativa
Position chr2: 6968723-6969865  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os02g0224200
Parent gene annotation Similar to Ser/Thr specific protein phosphatase 2A B regulatory
subunit beta isoform. (Os02t0224200-01)
Parent gene strand -
Alternative splicing Os02g0224200_circ_g.1 Os02g0224200_circ_g.2 Os02g0224200_circ_g.3 Os02g0224200_circ_g.4 Os02g0224200_circ_g.5 Os02g0224200_circ_g.6 Os02g0224200_circ_g.8
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os02t0224200-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTGGAGTCAGTCCTTTCAAATAAAACTACACGACCACCTCTATCTCCAGTGGCAAGATGGTCAC
CGGATTTGTCAAACTCAATTGCAGAGATGATGTCAActtccaatacttgattgttttatcattt
gtagataagagaaagagggcgttgttggctgtttggcaccacttgatcttgttaatcttctcct
ctatttcc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTCCAATACTTGATTGTTTTATCATTTGTAGATAAGAGAAAGAGGGCGTTGTTGGCTGTTTGG
CACCACTTGATCTTGTTAATCTTCTCCTCTATTTCCAAACTTTTTAGGTAGTCGAACTACATGG
ATTACATATAAATCAGAAAAACAAATTGAGAAATTCCAGGATAGTTAATAACAATCTAACATGC
AGTGCATATGGCTTGGTAAGATAATCCTGGAAGCCTGCAACCAAAGCAAAGGAAAAATTTTGCT
ATAACTAATACCCCTATGTGCACTTACAGACTTGATACAGTCATTGGTGCACAAGCTTGACAAT
CCTGTTGCTATAGACTCTGATACTGTCTCCATTGTACAACTTTGGCAATCAATTTCTTGTTAAT
TAATATATTAGCATGAGTTAAAAATGCTATAACATCATGAAAACACTTTTAGCAATAATGTATT
AAGATCGCTATCATGTTGTTTTTATAAGGTTGGATCTACAAACAGCACATATTCATGGATGAAG
GGTACTACCACGTTACACCTAACTGGATGTTTTTTACCTACCATTGTATGTTTGTTACCTACCA
TTGTATGTACTGTCAGAATTGACAATTTCCTATGCTTATGTTTCAAAATATAATGTGATTTCCT
CCAACTTGAAATTTTATTATAAACTCTCAAGTTTAAGTGCCTGACTTGACTCGAGGTTTTCAAG
AAATCTAACATGGGCAAAAACATATATTCAGATCAGATATTTTTGTTACTTTTAAATTCTTATC
AAAATTATACAGTCCAACTGTGGCAGATATATATGTCACTCTGATTCATGGACCAGGGGAGACA
CTATAATTAAAACCATTTTAAGTTTCACATACCTCAGGTTCATGACTCTGAAATTCAGTCTTGT
AACGGAATTCAGGATGCCTGGCAATCGGGTAATCTTGTCTCTCAAGTTCACTCCGACTGGCGCT
CTGCATATAAATTGACTTCTATGAGAACAAGAGATTTAAACAAGAAACCTACATAACTTAGATA
GTGTGTGGTACTTACATCCCTGGAGTCAGTCCTTTCAAATAAAACTACACGACCACCTCTATCT
CCAGTGGCAAGATGGTCACCGGATTTGTCAAACTCAATTGCAGAGATGATGTCAA
Conservation Information
Conserved circRNAs osi_circ_012739
PMCS 0.17452936
Functional Information
Coding potential Y
Potential coding position 6969823-6968834(+)
Potential amino acid sequence MVTGFVKLNCRDDVNFQYLIVLSFVDKRKRALLAVWHHLILLIFSSISKLFR*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017