Detail information of BGIOSGA014558_circ_g.3


General Information
CircRNA Name BGIOSGA014558_circ_g.3
ID in PlantcircBase osi_circ_014647
Alias Chr04:28629746_28630663(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 26850980-26851897  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2
Parent gene BGIOSGA014558
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA014558_circ_g.1 BGIOSGA014558_circ_g.2 BGIOSGA014558_circ_g.4
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-AA
Number of exons covered BGIOSGA014558-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGCGTATTGCTTGTTCACCAAGCTGTCCATACTCTTGCAGAAGTTTATGGATAGATCCACCAGA
TACATACTCCAAGTATATATAAAGCTTATCATCAACccccttcatactggctccatggcggttt
cgatgtagccatctccaggacagtgcatcccaaactccatatgtcaacagctaggttgcaccca
tttgagtt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCCCTTCATACTGGCTCCATGGCGGTTTCGATGTAGCCATCTCCAGGACAGTGCATCCCAAACT
CCATATGTCAACAGCTAGGTTGCACCCATTTGAGTTTTTTATAACCTGCGTATGTGTTGCATAG
TATGTGATGTACAGAAATGGCAATAAGATATGCATGAAACAAAAAATTAACAAGTAAAGATTTT
CAGTGATACCTCTGGAGCCATCCAATATGGACTACCCTTAAAGGAGAAAGGACACTGCTGCCCA
TTGATCTGCATAAAGACACATTTAATACGTATTCATGAGTAAAATACTTCCACATTATACAAAA
GGCATTTTGTAACTTATCAGGAGTGAGGGGGCTAGCAAGGTTTCAAGCACCCTTAACAGCAGTA
CTCAATCAATGCATTAACCAGTGACAGGAGCTACAAGATCAAGTTGATATAGATACTGCTATAT
ATTTTTGAAGAGCTCGATATAATTCAAACAGTTGTGACTATGATATGAGGCATAGATGCAGAAA
TGGAATGACACGGAAAATAAAGTTCAATTGACAAAAGTCATTTTCAAAAAATTAAAGTGGGCAG
AAAAACTTACATGTTTTGCCATTCCAAAATCTGCAAGCTTAACACGACCACTAGGATCTACTAG
TATATTTGCACCTTTAATATCCCTGCAAAATTGTGATGAACAGGACTTATAATTACACCATAAT
TCCACCGATACAAACAAACCAAAGAAAAGAGAGAAAACCAAAGAAATTGCTACCTATGGACTGT
ATTCTTCGCATGCAAATAAGCCAACCCTGAAAGTATCTGCTGTGTGTAGCTGCGTATTGCTTGT
TCACCAAGCTGTCCATACTCTTGCAGAAGTTTATGGATAGATCCACCAGATACATACTCCAAGT
ATATATAAAGCTTATCATCAAC
Conservation Information
Conserved circRNAs osa_circ_024850 osa_circ_024849
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021