Detail information of BGIOSGA014558_circ_g.1


General Information
CircRNA Name BGIOSGA014558_circ_g.1
ID in PlantcircBase osi_circ_014645
Alias Chr04:28672066_28673690(ZS97RS2), Chr04:28629039_28630663(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 26850275-26851897  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method find_circ, CIRI2
Parent gene BGIOSGA014558
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA014558_circ_g.2 BGIOSGA014558_circ_g.3 BGIOSGA014558_circ_g.4
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA014558-TA:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGCGTATTGCTTGTTCACCAAGCTGTCCATACTCTTGCAGAAGTTTATGGATAGATCCACCAGA
TACATACTCCAAGTATATATAAAGCTTATCATCAACcctgtgttttgaagaaaattttgcacct
cttctctggtaaattgtctgaccctccaatcccaatgaggaaatatttcttgtatgcgcagcca
tctgaaaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGTGTTTTGAAGAAAATTTTGCACCTCTTCTCTGGTAAATTGTCTGACCCTCCAATCCCAAT
GAGGAAATATTTCTTGTATGCGCAGCCATCTGAAAACTCAAATAATACCAAGCAAAGTGAACAG
GCCATGAATTATCCATGTAACCATGTTATGTCAGTTATGGCAGTATTCAAGTGGTACCTTGGCG
CTCGGTCTACAAGATATAACAGCCAAATGTTCCAATGGTTCAGAAAGAACAGATTTCTCTAGTG
ATACTGCTTTTTGAACAAATGGGTGCTGCAAAAGCTCCATTGCAGTGGGACGTTGAGAAGGATC
ACGTTGCAGGCACTTTCTGATGAAGTCCTTGCCTGGCTCTGAAAGGTGATCTGGTATTGGTGGA
AGTTCCTTGCTATTTCCGATCTTGAACATTGCAGCAATCTGCAGGAATGAAAGAGGGGAATGTT
CCTGCCAAAGTTGCTTCGGTGAAACTTCCAAGTCTCATTACGAGTCAAAAGAAGGAAGTCTTTA
CATTTCAAGCACCTTTCATAAAATTGCATGCAAGTAAATGATCTTTCAACATTCTACATCAGAC
AGTGATAAATTCTTAAAGAATTCATGAAAAGAACATTTCCATATCCCATTCACTCATGGCGAAA
ATCACCATAATTAGGTTATCTATATTATAGAACAAATAAACTGTGCCTCAGAAGTATAATACTA
ACCCCTTCATACTGGCTCCATGGCGGTTTCGATGTAGCCATCTCCAGGACAGTGCATCCCAAAC
TCCATATGTCAACAGCTAGGTTGCACCCATTTGAGTTTTTTATAACCTGCGTATGTGTTGCATA
GTATGTGATGTACAGAAATGGCAATAAGATATGCATGAAACAAAAAATTAACAAGTAAAGATTT
TCAGTGATACCTCTGGAGCCATCCAATATGGACTACCCTTAAAGGAGAAAGGACACTGCTGCCC
ATTGATCTGCATAAAGACACATTTAATACGTATTCATGAGTAAAATACTTCCACATTATACAAA
AGGCATTTTGTAACTTATCAGGAGTGAGGGGGCTAGCAAGGTTTCAAGCACCCTTAACAGCAGT
ACTCAATCAATGCATTAACCAGTGACAGGAGCTACAAGATCAAGTTGATATAGATACTGCTATA
TATTTTTGAAGAGCTCGATATAATTCAAACAGTTGTGACTATGATATGAGGCATAGATGCAGAA
ATGGAATGACACGGAAAATAAAGTTCAATTGACAAAAGTCATTTTCAAAAAATTAAAGTGGGCA
GAAAAACTTACATGTTTTGCCATTCCAAAATCTGCAAGCTTAACACGACCACTAGGATCTACTA
GTATATTTGCACCTTTAATATCCCTGCAAAATTGTGATGAACAGGACTTATAATTACACCATAA
TTCCACCGATACAAACAAACCAAAGAAAAGAGAGAAAACCAAAGAAATTGCTACCTATGGACTG
TATTCTTCGCATGCAAATAAGCCAACCCTGAAAGTATCTGCTGTGTGTAGCTGCGTATTGCTTG
TTCACCAAGCTGTCCATACTCTTGCAGAAGTTTATGGATAGATCCACCAGATACATACTCCAAG
TATATATAAAGCTTATCATCAAC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021