Detail information of EPlOSAG00000004065_circ_ig.3


General Information
CircRNA Name EPlOSAG00000004065_circ_ig.3
ID in PlantcircBase osa_circ_023503
Alias Os04circ03139/Os_ciR1107
Organism Oryza sativa
Position chr4: 16869310-16870706  JBrowse»
Reference genome IRGSP-1.0.38
Type   ig-circRNA
Identification method SMALT, Segemehl, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing EPlOSAG00000004065_circ_ig.2
Support reads 5/14
Tissues leaf and panicle/root
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATAGCGATTCATGTAGCTCACCATCATTAATCTCTAATATTGGTCGCTTACGCTTAAGGCGTGC
ACAAACCAGAGATTTTCCATCAGGCATAGACATAATcttatattctcacagaaatgagctgatt
tagctctatccaccgcagttagcagactatgcaaaggctctggaggtggcttgtaggaaggcaa
gataacac
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 272
Transcript exons: 16869310-16869352,16869372-16869472,16870579-16870706
CTTATATTCTCACAGAAATGAGCTGATTTAGCTCTATCCACCGAGGCTCTGGAGGTGGCTTGTA
GGAAGGCAAGATAACACTTCCTCCTTTGCAGCACTTGTTGTATAACGGTCTTGTTGTGTGACGC
CGTCGGTCGATGCGCTGCTGTGGGGAAGTCATCGGCATCGTTTGATAGCGATTCATGTAGCTCA
CCATCATTAATCTCTAATATTGGTCGCTTACGCTTAAGGCGTGCACAAACCAGAGATTTTCCAT
CAGGCATAGACATAAT

Transcript length: 291
Transcript exons: 16869310-16869460,16870567-16870706
CTTATATTCTCACAGAAATGAGCTGATTTAGCTCTATCCACCGCAGTTAGCAGACTATGCAAAG
GCTCTGGAGGTGGCTTGTAGGAAGGCAAGATAACACTTCCTCCTTTGCAGCACTTGTTGTATAA
CGGTCTTGTTGTGTGACGCCGTCCTGAAATTGAAGGCTGTGGGGAAGTCATCGGCATCGTTTGA
TAGCGATTCATGTAGCTCACCATCATTAATCTCTAATATTGGTCGCTTACGCTTAAGGCGTGCA
CAAACCAGAGATTTTCCATCAGGCATAGACATAAT

Transcript length: 300
Transcript exons: 16869310-16869486,16870584-16870706
CTTATATTCTCACAGAAATGAGCTGATTTAGCTCTATCCACCGCAGTTAGCAGACTATGCAAAG
GCTCTGGAGGTGGCTTGTAGGAAGGCAAGATAACACTTCCTCCTTTGCAGCACTTGTTGTATAA
CGGTCTTGTTGTGTGACGCCGTCGGTCGATGCGCTCCTCATACCAAAATGGGGAAGTCATCGGC
ATCGTTTGATAGCGATTCATGTAGCTCACCATCATTAATCTCTAATATTGGTCGCTTACGCTTA
AGGCGTGCACAAACCAGAGATTTTCCATCAGGCATAGACATAAT

Genomic sequence CTTATATTCTCACAGAAATGAGCTGATTTAGCTCTATCCACCGCAGTTAGCAGACTATGCAAAG
GCTCTGGAGGTGGCTTGTAGGAAGGCAAGATAACACTTCCTCCTTTGCAGCACTTGTTGTATAA
CGGTCTTGTTGTGTGACGCCGTCGGTCGATGCGCTCCTCATACCAAAATAATGCGCCACAATAA
CAACATGTGTGACTTGGTGGACCAAGGTTTAATGGTGAGAAAACAGAGCCTGACAATAAAAAGG
GGGAAATGTGAGCTCGAGTTCTCATTCTAGTGTAAAATGTACAAATCTATTGAGGCAAGAGTGT
ATACATCGAGACCAGCATCGAGATTGAACATTTACAATCGAGCAGTTTGATGAGCAGTCATGAT
CGAACAGTCGAGATAACATCATGATTGAGCATCACATACGAATCGTCTGCGAGAATCAACACAA
ATTAGTATGTATCGTGTATGCCTTCTCAATTGCAAGAAACAAAATGTGTTCGAATACATATGGC
TTAGAACAAACAGGGAAAATATATGTTAGCGATGGACTTACGGGAATGACCATTTGTAGGGATA
GTGGTATGAGAAGACGATGCATCTGCGGAAGGCAATATTAGGATATTAGGCACATAATATGCAA
AAGAAAAGGAACTGTAAATTTGAGACACAGTACAGACACCTTTATCATATATGGAAGATGATGA
ATGTGCCAACCGTTGTCGCAATACCCTAGAACGCTCTGACATATATGCTTTACGTTTTTTACGT
GATTGAGCAGCCATGGCGGAATCTGGGCGAGGAAAATCTGAGGAATAAGTAAGAGAATAGCATT
AGGCACATTGCATGGACGCATTGTGGAGGCAAATGGAGCACATTATTTGTGAATGTAATATAAG
AATTTTTTAAAAAAAAATTGAGCACAATGGTGGCCATGCCTGTAAGTTGAGTATACGAACGGCG
TCGAACAGGCCGGTTAGATCTGAAATTGAAGGCTGTGGGGAAGTCATTCGCGTGGCTTGATGGT
GATCCATGTAACTCACCATCATTAGTCTCTATAAGTAAGAGAATAGCATTAGCTACATTGCATG
GGTGCACTGTGAAGGCAGATGGAGAACATTATTTGTGAATGTAATATTTTTATTAAGATATAAG
AATGAGCAGCAAGCACACAGAGGTGTTTTAAAAGATTAAGCACCATGGTGGCCATATATACCAG
CAAGTTGAGTACACAAACGGCGTCGAACAGGCCGGTTAGATCTGAAATTGAAGGCTGTGGGGAA
GTCATCGGCATCGTTTGATAGCGATTCATGTAGCTCACCATCATTAATCTCTAATATTGGTCGC
TTACGCTTAAGGCGTGCACAAACCAGAGATTTTCCATCAGGCATAGACATAAT
Conservation Information
Conserved circRNAs osi_circ_014265 osi_circ_005398*
PMCS 0.570049805
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015;Ye et al., 2015