Detail information of EPlOSAG00000004065_circ_ig.2


General Information
CircRNA Name EPlOSAG00000004065_circ_ig.2
ID in PlantcircBase osa_circ_023502
Alias Os04circ03135
Organism Oryza sativa
Position chr4: 16869310-16870114  JBrowse»
Reference genome IRGSP-1.0.38
Type   ig-circRNA
Identification method SMALT, Segemehl
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing EPlOSAG00000004065_circ_ig.3
Support reads 2
Tissues leaf and panicle
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGTGCCAACCGTTGTCGCAATACCCTAGAACGCTCTGACATATATGCTTTACGTTTTTTACGTG
ATTGAGCAGCCATGGCGGAATCTGGGCGAGGAAAATcttatattctcacagaaatgagctgatt
tagctctatccaccgcagttagcagactatgcaaaggctctggaggtggcttgtaggaaggcaa
gataacac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTATATTCTCACAGAAATGAGCTGATTTAGCTCTATCCACCGCAGTTAGCAGACTATGCAAAG
GCTCTGGAGGTGGCTTGTAGGAAGGCAAGATAACACTTCCTCCTTTGCAGCACTTGTTGTATAA
CGGTCTTGTTGTGTGACGCCGTCGGTCGATGCGCTCCTCATACCAAAATAATGCGCCACAATAA
CAACATGTGTGACTTGGTGGACCAAGGTTTAATGGTGAGAAAACAGAGCCTGACAATAAAAAGG
GGGAAATGTGAGCTCGAGTTCTCATTCTAGTGTAAAATGTACAAATCTATTGAGGCAAGAGTGT
ATACATCGAGACCAGCATCGAGATTGAACATTTACAATCGAGCAGTTTGATGAGCAGTCATGAT
CGAACAGTCGAGATAACATCATGATTGAGCATCACATACGAATCGTCTGCGAGAATCAACACAA
ATTAGTATGTATCGTGTATGCCTTCTCAATTGCAAGAAACAAAATGTGTTCGAATACATATGGC
TTAGAACAAACAGGGAAAATATATGTTAGCGATGGACTTACGGGAATGACCATTTGTAGGGATA
GTGGTATGAGAAGACGATGCATCTGCGGAAGGCAATATTAGGATATTAGGCACATAATATGCAA
AAGAAAAGGAACTGTAAATTTGAGACACAGTACAGACACCTTTATCATATATGGAAGATGATGA
ATGTGCCAACCGTTGTCGCAATACCCTAGAACGCTCTGACATATATGCTTTACGTTTTTTACGT
GATTGAGCAGCCATGGCGGAATCTGGGCGAGGAAAAT
Conservation Information
Conserved circRNAs NA
PMCS 0.314140766
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015