Plant Circular RNA Database

Detail information of Os03g0264150_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os03g0264150_circ_g.1
					
						ID in PlantcircBase
						osa_circ_018992
					
						Alias
						Os_ciR4781
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr3: 8698768-8701046  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						CIRCexplorer, find_circ
					
						Parent gene
						
							Os03g0264150						
					
						Parent gene annotation
						
							Hypothetical gene. (Os03t0264150-01)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os03g0264300_circ_g.1 Os03g0264300_circ_g.2 Os03g0264300_circ_g.3 Os03g0264300_circ_g.4 						
					
						Support reads
						4/2
					
						Tissues
						root/root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os03t0264150-01:5

General Information
CircRNA Name	Os03g0264150_circ_g.1
ID in PlantcircBase	osa_circ_018992
Alias	Os_ciR4781
Organism	Oryza sativa
Position	chr3: 8698768-8701046 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ue-circRNA
Identification method	CIRCexplorer, find_circ
Parent gene	Os03g0264150
Parent gene annotation	Hypothetical gene. (Os03t0264150-01)
Parent gene strand	-
Alternative splicing	Os03g0264300_circ_g.1 Os03g0264300_circ_g.2 Os03g0264300_circ_g.3 Os03g0264300_circ_g.4
Support reads	4/2
Tissues	root/root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os03t0264150-01:5

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							AGATATATATAGTTTTGGGGTCCTTGTCCTTGAAGTGATAAGTGGTGAAAGCAGTAGCAAATCG
ACTTGGGGGCAAGATATGAATGTCCTTGTGGAATGGgggaagcttctcccatctcgttgactat
tgagaacggatattcgaatggagtgagggttttgtatggctaatcgtgagctgagctgggtgat
ctggtctt

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 986
Transcript exons: 8698768-8699028,8699814-8699938,8700119-8700329,8700407-
8700644,8700896-8701046
GGGAAGCTTCTCCCATCTCGTTGACTATTGAGAACGGATATTCGAATGGAGTGAGGGTTTTGTA
TGGCTAATCGTGAGCTGAGCTGGGTGATCTGGTCTTCGTGACAGTTCTGAGCACGAACTGGGGA
ACTGGCTTCGCATTGAGGTTCCAAGAAGGTCACCGGATTTGGCGCATGGGGGTCTCCGCCAGCT
GCTTGTGGGGTGGCTCCGAGTCGAGGGGGAACCAAAATGGTTCTGCTGCGGTGACGTCTCCTCG
TTCAGGTCAAGTAATATCAAGAGCTGGAAGTAATGTACGAGTCTTCTCCCTAAAGGAGTTGAAG
CTTGCCACTCGAAACTTTCACATGATGAACTGCGTTGGCCGTGGGGGTTTTGGAGCAGTGTACA
AGGGAAACCTGAAAGATGGCACTCAAATTGCAATTAAAAAGCTGTCAGCTGAATCAAAGCAAGG
GGCAAATGAGTTCTTGACAGAGATAAATGTCATATCCAATGTCAGGCACCCCAACCTTGTAAAG
CTAATTGGTTGCTGTGTTGAAGGGACTAACAGACTACTAGTGTATGAATATGCAGAGAACAATA
GCTTGGCACATGCTTTACTTGGACCAAGGAGTAGGTGTATTCCGTTAAACTGGCAAAAAAGAGC
AGCTATTTGTATCGGAACTGCTTCTGGCCTTGCATTTCTTCATGAGGAAGCACAGCCACGCATT
GTTCATCGTGATATCAAGGCCAGCAACATTTTACTTGATAAGAAACTACTTCCTAAAATTGGAG
ATTTTGGACTGGCCAAGCTTTTTCCTGACACCATTACTCACATTAGCACACGTGTTGCAGGAAC
AATGGGTTACTTAGCACCAGAGTATGCCTTGTTGGGACAGTTAACCAAGAAAGCAGATATATAT
AGTTTTGGGGTCCTTGTCCTTGAAGTGATAAGTGGTGAAAGCAGTAGCAAATCGACTTGGGGGC
AAGATATGAATGTCCTTGTGGAATGG
						
					

						Genomic sequence
						
							GGGAAGCTTCTCCCATCTCGTTGACTATTGAGAACGGATATTCGAATGGAGTGAGGGTTTTGTA
TGGCTAATCGTGAGCTGAGCTGGGTGATCTGGTCTTCGTGACAGTTCTGAGCACGAACTGGGGA
ACTGGCTTCGCATTGAGGTTCCAAGAAGGTCACCGGATTTGGCGCATGGGGGTCTCCGCCAGCT
GCTTGTGGGGTGGCTCCGAGTCGAGGGGGAACCAAAATGGTTCTGCTGCGGTGACGTCTCCTCG
TTCAGGTATAGTATTTCACTCACTTGGTTCCAGAGATCATGAGCTAGCTAATACTGTCAGAATT
TTAATGCTGCTTGCATTTCAAGGTCTGCATTTGCATTTAGGAAAAACCAGTGTTGTTTTACATG
AAAATGGCGATTAAATTACTACCTATCCTCTTCTGCCATGTACACATGTTGCTCCAGGATATAT
ATGGTTATGGATGTGTCGAACAATCATTCTTTGGAGAGTCTACTGAGAGGATTTTCTTTTTCTT
TATGTTATTGAAGCATTCAAAGGGATGAAATGATGAGAAATTCATGTTTTTTTTAATAATAGGA
GGAACGTCTGAATATTTTCTGTCTTTTCATACATAGGAAAGTGTTGTTGGCAAGTTTCTCTTTT
TAAGACAAAAGCAAGGCTCAACACACCAAAACTCACACAATATATGCTTCATGAGTATAATCAT
CACTCAAGATAACACATCCGAAAAAAAGTTCTTGATGTTCTTATGTCTTCCTTTAAGCAGTGCC
ATCTGCAAGGAAGTTTTGAGCGAGCTACTTCCTGCATTAGGGCTTAGGGGTCCTGTTGGAAACT
ATACTGTGTAAAAAAAAATAGGAAACACCATGTAAAACGGTATGCATTATAATTAATCATGCAT
ATATGAGGATATTGGTCTTAACCTTAGAGCAGTCAACCTTAATGGCCACTATCATGTTTTAGTG
AACTAATACATGTACTTCTTTTTATTACTTCTCTTTCCTATTTTTCTAAACAAACATTGATGAT
ATCACCTCTGGAAGAAATGCAGGTCAAGTAATATCAAGAGCTGGAAGTAATGTACGAGTCTTCT
CCCTAAAGGAGTTGAAGCTTGCCACTCGAAACTTTCACATGATGAACTGCGTTGGCCGTGGGGG
TTTTGGAGCAGTGTACAAGGTGAGAAATGGACTCACTTTGTGCATCATATTTTCCTGGCTTCTT
ACTTTATGGCCTTTTATTTTATCATCACTTGCTAGTTTTACTGTAAGAATTCTCTCTTGATATT
TTGTAATAATACGTTTTATAAGTCTGCAAGTATATAATGAATAACAACTAACAAGAGTCTCCTT
CACTTAGGGAAACCTGAAAGATGGCACTCAAATTGCAATTAAAAAGCTGTCAGCTGAATCAAAG
CAAGGGGCAAATGAGTTCTTGACAGAGATAAATGTCATATCCAATGTCAGGCACCCCAACCTTG
TAAAGCTAATTGGTTGCTGTGTTGAAGGGACTAACAGACTACTAGTGTATGAATATGCAGAGAA
CAATAGCTTGGCACATGCTTTACTTGGTAAGTTCATTAAATCAATACTGACATATTGATCAAGT
AAAGTCCAGCCATTGTGTTAAATTTACCTTTGTGATCAGGACCAAGGAGTAGGTGTATTCCGTT
AAACTGGCAAAAAAGAGCAGCTATTTGTATCGGAACTGCTTCTGGCCTTGCATTTCTTCATGAG
GAAGCACAGCCACGCATTGTTCATCGTGATATCAAGGCCAGCAACATTTTACTTGATAAGAAAC
TACTTCCTAAAATTGGAGATTTTGGACTGGCCAAGCTTTTTCCTGACACCATTACTCACATTAG
CACACGTGTTGCAGGAACAATGTAAGTACATGTAAATCTTTTGATTATTTACCTGCTCTTGTAA
TGGATCTATGCACATTACGTGTAGATTTTTTCCAGAATAATCAGCTCAGTGTATGAATTTTTCC
AGGCAGTTTTGTCAGCTTACTATTGTTGCCTCTATTTCTAGTGACCCAAGTTGACCTGTCATTG
TCAAATCACTTAAATTGCATCTTGCTTAGTCTGTGATAGGATCATTTTACTTATCGTTTGGGAT
GTTATTTCTCCTGCAGGGGTTACTTAGCACCAGAGTATGCCTTGTTGGGACAGTTAACCAAGAA
AGCAGATATATATAGTTTTGGGGTCCTTGTCCTTGAAGTGATAAGTGGTGAAAGCAGTAGCAAA
TCGACTTGGGGGCAAGATATGAATGTCCTTGTGGAATGG
						
					

			
		

Sequences
Splice junction sequence	AGATATATATAGTTTTGGGGTCCTTGTCCTTGAAGTGATAAGTGGTGAAAGCAGTAGCAAATCG ACTTGGGGGCAAGATATGAATGTCCTTGTGGAATGGgggaagcttctcccatctcgttgactat tgagaacggatattcgaatggagtgagggttttgtatggctaatcgtgagctgagctgggtgat ctggtctt
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 986 Transcript exons: 8698768-8699028,8699814-8699938,8700119-8700329,8700407- 8700644,8700896-8701046 GGGAAGCTTCTCCCATCTCGTTGACTATTGAGAACGGATATTCGAATGGAGTGAGGGTTTTGTA TGGCTAATCGTGAGCTGAGCTGGGTGATCTGGTCTTCGTGACAGTTCTGAGCACGAACTGGGGA ACTGGCTTCGCATTGAGGTTCCAAGAAGGTCACCGGATTTGGCGCATGGGGGTCTCCGCCAGCT GCTTGTGGGGTGGCTCCGAGTCGAGGGGGAACCAAAATGGTTCTGCTGCGGTGACGTCTCCTCG TTCAGGTCAAGTAATATCAAGAGCTGGAAGTAATGTACGAGTCTTCTCCCTAAAGGAGTTGAAG CTTGCCACTCGAAACTTTCACATGATGAACTGCGTTGGCCGTGGGGGTTTTGGAGCAGTGTACA AGGGAAACCTGAAAGATGGCACTCAAATTGCAATTAAAAAGCTGTCAGCTGAATCAAAGCAAGG GGCAAATGAGTTCTTGACAGAGATAAATGTCATATCCAATGTCAGGCACCCCAACCTTGTAAAG CTAATTGGTTGCTGTGTTGAAGGGACTAACAGACTACTAGTGTATGAATATGCAGAGAACAATA GCTTGGCACATGCTTTACTTGGACCAAGGAGTAGGTGTATTCCGTTAAACTGGCAAAAAAGAGC AGCTATTTGTATCGGAACTGCTTCTGGCCTTGCATTTCTTCATGAGGAAGCACAGCCACGCATT GTTCATCGTGATATCAAGGCCAGCAACATTTTACTTGATAAGAAACTACTTCCTAAAATTGGAG ATTTTGGACTGGCCAAGCTTTTTCCTGACACCATTACTCACATTAGCACACGTGTTGCAGGAAC AATGGGTTACTTAGCACCAGAGTATGCCTTGTTGGGACAGTTAACCAAGAAAGCAGATATATAT AGTTTTGGGGTCCTTGTCCTTGAAGTGATAAGTGGTGAAAGCAGTAGCAAATCGACTTGGGGGC AAGATATGAATGTCCTTGTGGAATGG
Genomic sequence	GGGAAGCTTCTCCCATCTCGTTGACTATTGAGAACGGATATTCGAATGGAGTGAGGGTTTTGTA TGGCTAATCGTGAGCTGAGCTGGGTGATCTGGTCTTCGTGACAGTTCTGAGCACGAACTGGGGA ACTGGCTTCGCATTGAGGTTCCAAGAAGGTCACCGGATTTGGCGCATGGGGGTCTCCGCCAGCT GCTTGTGGGGTGGCTCCGAGTCGAGGGGGAACCAAAATGGTTCTGCTGCGGTGACGTCTCCTCG TTCAGGTATAGTATTTCACTCACTTGGTTCCAGAGATCATGAGCTAGCTAATACTGTCAGAATT TTAATGCTGCTTGCATTTCAAGGTCTGCATTTGCATTTAGGAAAAACCAGTGTTGTTTTACATG AAAATGGCGATTAAATTACTACCTATCCTCTTCTGCCATGTACACATGTTGCTCCAGGATATAT ATGGTTATGGATGTGTCGAACAATCATTCTTTGGAGAGTCTACTGAGAGGATTTTCTTTTTCTT TATGTTATTGAAGCATTCAAAGGGATGAAATGATGAGAAATTCATGTTTTTTTTAATAATAGGA GGAACGTCTGAATATTTTCTGTCTTTTCATACATAGGAAAGTGTTGTTGGCAAGTTTCTCTTTT TAAGACAAAAGCAAGGCTCAACACACCAAAACTCACACAATATATGCTTCATGAGTATAATCAT CACTCAAGATAACACATCCGAAAAAAAGTTCTTGATGTTCTTATGTCTTCCTTTAAGCAGTGCC ATCTGCAAGGAAGTTTTGAGCGAGCTACTTCCTGCATTAGGGCTTAGGGGTCCTGTTGGAAACT ATACTGTGTAAAAAAAAATAGGAAACACCATGTAAAACGGTATGCATTATAATTAATCATGCAT ATATGAGGATATTGGTCTTAACCTTAGAGCAGTCAACCTTAATGGCCACTATCATGTTTTAGTG AACTAATACATGTACTTCTTTTTATTACTTCTCTTTCCTATTTTTCTAAACAAACATTGATGAT ATCACCTCTGGAAGAAATGCAGGTCAAGTAATATCAAGAGCTGGAAGTAATGTACGAGTCTTCT CCCTAAAGGAGTTGAAGCTTGCCACTCGAAACTTTCACATGATGAACTGCGTTGGCCGTGGGGG TTTTGGAGCAGTGTACAAGGTGAGAAATGGACTCACTTTGTGCATCATATTTTCCTGGCTTCTT ACTTTATGGCCTTTTATTTTATCATCACTTGCTAGTTTTACTGTAAGAATTCTCTCTTGATATT TTGTAATAATACGTTTTATAAGTCTGCAAGTATATAATGAATAACAACTAACAAGAGTCTCCTT CACTTAGGGAAACCTGAAAGATGGCACTCAAATTGCAATTAAAAAGCTGTCAGCTGAATCAAAG CAAGGGGCAAATGAGTTCTTGACAGAGATAAATGTCATATCCAATGTCAGGCACCCCAACCTTG TAAAGCTAATTGGTTGCTGTGTTGAAGGGACTAACAGACTACTAGTGTATGAATATGCAGAGAA CAATAGCTTGGCACATGCTTTACTTGGTAAGTTCATTAAATCAATACTGACATATTGATCAAGT AAAGTCCAGCCATTGTGTTAAATTTACCTTTGTGATCAGGACCAAGGAGTAGGTGTATTCCGTT AAACTGGCAAAAAAGAGCAGCTATTTGTATCGGAACTGCTTCTGGCCTTGCATTTCTTCATGAG GAAGCACAGCCACGCATTGTTCATCGTGATATCAAGGCCAGCAACATTTTACTTGATAAGAAAC TACTTCCTAAAATTGGAGATTTTGGACTGGCCAAGCTTTTTCCTGACACCATTACTCACATTAG CACACGTGTTGCAGGAACAATGTAAGTACATGTAAATCTTTTGATTATTTACCTGCTCTTGTAA TGGATCTATGCACATTACGTGTAGATTTTTTCCAGAATAATCAGCTCAGTGTATGAATTTTTCC AGGCAGTTTTGTCAGCTTACTATTGTTGCCTCTATTTCTAGTGACCCAAGTTGACCTGTCATTG TCAAATCACTTAAATTGCATCTTGCTTAGTCTGTGATAGGATCATTTTACTTATCGTTTGGGAT GTTATTTCTCCTGCAGGGGTTACTTAGCACCAGAGTATGCCTTGTTGGGACAGTTAACCAAGAA AGCAGATATATATAGTTTTGGGGTCCTTGTCCTTGAAGTGATAAGTGGTGAAAGCAGTAGCAAA TCGACTTGGGGGCAAGATATGAATGTCCTTGTGGAATGG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.269476781

Conservation Information
Conserved circRNAs	NA
PMCS	0.269476781

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							8701044-8698835(+)
8698942-8698788(+)
8698785-8700622(-)
						
						Potential amino acid sequence
						
							MGEASPISLTIENGYSNGVRVLYG*(+)
MGVSASCLWGGSESRGNQNGSAAVTSPRSGQVISRAGSNVRVFSLKELKLATRNFHMMNCVGRG
GFGAVYKGNLKDGTQIAIKKLSAESKQGANEFLTEINVISNVRHPNLVKLIGCCVEGTNRLLVY
EYAENNSLAHALLGPRSRCIPLNWQKRAAICIGTASGLAFLHEEAQPRIVHRDIKASNILLDKK
LLPKIGDFGLAKLFPDTITHISTRVAGTMGYLAPEYALLGQLTKKADIYSFGVLVLEVISGESS
SKSTWGQDMNVLVEWGKLLPSR*(+)
MGEASPIPQGHSYLAPKSICYCFHHLSLQGQGPQNYIYLLSWLTVPTRHTLVLSNPLFLQHVC*
(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	8701044-8698835(+) 8698942-8698788(+) 8698785-8700622(-)
Potential amino acid sequence	MGEASPISLTIENGYSNGVRVLYG(+) MGVSASCLWGGSESRGNQNGSAAVTSPRSGQVISRAGSNVRVFSLKELKLATRNFHMMNCVGRG GFGAVYKGNLKDGTQIAIKKLSAESKQGANEFLTEINVISNVRHPNLVKLIGCCVEGTNRLLVY EYAENNSLAHALLGPRSRCIPLNWQKRAAICIGTASGLAFLHEEAQPRIVHRDIKASNILLDKK LLPKIGDFGLAKLFPDTITHISTRVAGTMGYLAPEYALLGQLTKKADIYSFGVLVLEVISGESS SKSTWGQDMNVLVEWGKLLPSR(+) MGEASPIPQGHSYLAPKSICYCFHHLSLQGQGPQNYIYLLSWLTVPTRHTLVLSNPLFLQHVC* (-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015;Chu et al., 2017

circRNA

Detail information of Os03g0264150_circ_g.1

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