Detail information of Zm00001d014033_circ_g.2


General Information
CircRNA Name Zm00001d014033_circ_g.2
ID in PlantcircBase zma_circ_008433
Alias zma_circ_0002056
Organism Zea mays
Position chr5: 29820047-29820309  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method find_circ
Parent gene Zm00001d014033
Parent gene annotation Transportin MOS14
Parent gene strand -
Alternative splicing Zm00001d014033_circ_g.1
Support reads NA
Tissues leaf, root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Zm00001d014033_T004:1
Zm00001d014033_T003:1
Zm00001d014033_T001:1
Zm00001d014033_T005:2
Zm00001d014033_T006:1
Zm00001d014033_T002:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGAAATCAGGTATTGTACCATATCTAACATGTCTAAAATCCTTGCGGTCTTCCTCGGAAAAGGT
GTGGTAGTCCTCAGGGTATTCAACTCGAAAACTGACctgagcaagcttggtggaaagtagtttt
agcgtcgagtcacccccaagaacttcagttgcatcaagtagcacatcactaacagctgaaacac
gaatggcc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 165
Transcript exons: 29820047-29820129,29820228-29820309
CTGAGCAAGCTTGGTGGAAAGTAGTTTTAGCGTCGAGTCACCCCCAAGAACTTCAGTTGCATCA
AGTAGCACATCACTAACAGCATATCTAACATGTCTAAAATCCTTGCGGTCTTCCTCGGAAAAGG
TGTGGTAGTCCTCAGGGTATTCAACTCGAAAACTGAC

Transcript length: 263
Transcript exons: 29820047-29820309
CTGAGCAAGCTTGGTGGAAAGTAGTTTTAGCGTCGAGTCACCCCCAAGAACTTCAGTTGCATCA
AGTAGCACATCACTAACAGCTGAAACACGAATGGCCCTAGTTCTGTTTTACAATTGTATTGCAC
AAGATAGGCAAAATGGACTAATGAAACCAACTAAGAGAAATCAGGTATTGTACCATATCTAACA
TGTCTAAAATCCTTGCGGTCTTCCTCGGAAAAGGTGTGGTAGTCCTCAGGGTATTCAACTCGAA
AACTGAC

Genomic sequence CTGAGCAAGCTTGGTGGAAAGTAGTTTTAGCGTCGAGTCACCCCCAAGAACTTCAGTTGCATCA
AGTAGCACATCACTAACAGCTGAAACACGAATGGCCCTAGTTCTGTTTTACAATTGTATTGCAC
AAGATAGGCAAAATGGACTAATGAAACCAACTAAGAGAAATCAGGTATTGTACCATATCTAACA
TGTCTAAAATCCTTGCGGTCTTCCTCGGAAAAGGTGTGGTAGTCCTCAGGGTATTCAACTCGAA
AACTGAC
Conservation Information
Conserved circRNAs NA
PMCS 0.270792629
Functional Information
Coding potential Y
Potential coding position 29820239-29820067(+)
Potential amino acid sequence MSKILAVFLGKGVVVLRVFNSKTDLSKLGGK*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021b