Detail information of AT2G03240_circ_g.3


General Information
CircRNA Name AT2G03240_circ_g.3
ID in PlantcircBase ath_circ_012664
Alias At_ciR4321
Organism Arabidpsis thaliana
Position chr2: 974982-975240  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ, CIRI-full
Parent gene AT2G03240
Parent gene annotation Phosphate transporter PHO1 homolog 5
Parent gene strand -
Alternative splicing AT2G03240_circ_g.4
Support reads 3
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G03240.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTTGAACCCAAATATGAAAGAGTAATTCACTCGATACCGCCTCCAGTAGTATATGTTACCAGCA
TACATAAGTATGTGCAGAACGACGAACCCGAACAAAagtgagcaggaaaagaggaagaagttcg
gttaatgcttgataatctttagtttcggggtcaacctccatgtcaagattggcaagaatacaaa
gaagtgca
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 259
Transcript exons: 974982-975240
AGTGAGCAGGAAAAGAGGAAGAAGTTCGGTTAATGCTTGATAATCTTTAGTTTCGGGGTCAACC
TCCATGTCAAGATTGGCAAGAATACAAAGAAGTGCAAAGACTCCAATGCTTAATCCCACAAATA
GAACTTGTCTATAACCAAGTTCAGTACCGTGCTTGAACCCAAATATGAAAGAGTAATTCACTCG
ATACCGCCTCCAGTAGTATATGTTACCAGCATACATAAGTATGTGCAGAACGACGAACCCGAAC
AAA

Genomic sequence AGTGAGCAGGAAAAGAGGAAGAAGTTCGGTTAATGCTTGATAATCTTTAGTTTCGGGGTCAACC
TCCATGTCAAGATTGGCAAGAATACAAAGAAGTGCAAAGACTCCAATGCTTAATCCCACAAATA
GAACTTGTCTATAACCAAGTTCAGTACCGTGCTTGAACCCAAATATGAAAGAGTAATTCACTCG
ATACCGCCTCCAGTAGTATATGTTACCAGCATACATAAGTATGTGCAGAACGACGAACCCGAAC
AAA
Conservation Information
Conserved circRNAs NA
PMCS 0.36678951
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015