Detail information of AT2G03240_circ_g.4


General Information
CircRNA Name AT2G03240_circ_g.4
ID in PlantcircBase ath_circ_012665
Alias 2:974982-975451
Organism Arabidpsis thaliana
Position chr2: 974982-975451  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G03240
Parent gene annotation Phosphate transporter PHO1 homolog 5
Parent gene strand -
Alternative splicing AT2G03240_circ_g.3
Support reads 2
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G03240.1:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTCATGTACTGTTTCTGGCCTTCCTCCTGCAAAATGTTTCGTGTTCGTATGATTGCGAATAGAG
CCACTACTAGAGAAAACAAACATCCACCCAAGAAACagtgagcaggaaaagaggaagaagttcg
gttaatgcttgataatctttagtttcggggtcaacctccatgtcaagattggcaagaatacaaa
gaagtgca
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 380
Transcript exons: 974982-975240,975331-975451
AGTGAGCAGGAAAAGAGGAAGAAGTTCGGTTAATGCTTGATAATCTTTAGTTTCGGGGTCAACC
TCCATGTCAAGATTGGCAAGAATACAAAGAAGTGCAAAGACTCCAATGCTTAATCCCACAAATA
GAACTTGTCTATAACCAAGTTCAGTACCGTGCTTGAACCCAAATATGAAAGAGTAATTCACTCG
ATACCGCCTCCAGTAGTATATGTTACCAGCATACATAAGTATGTGCAGAACGACGAACCCGAAC
AAACTGTAAAGAGGGAACATAGTGTTCATGTACTGTTTCTGGCCTTCCTCCTGCAAAATGTTTC
GTGTTCGTATGATTGCGAATAGAGCCACTACTAGAGAAAACAAACATCCACCCAAGAAAC

Genomic sequence AGTGAGCAGGAAAAGAGGAAGAAGTTCGGTTAATGCTTGATAATCTTTAGTTTCGGGGTCAACC
TCCATGTCAAGATTGGCAAGAATACAAAGAAGTGCAAAGACTCCAATGCTTAATCCCACAAATA
GAACTTGTCTATAACCAAGTTCAGTACCGTGCTTGAACCCAAATATGAAAGAGTAATTCACTCG
ATACCGCCTCCAGTAGTATATGTTACCAGCATACATAAGTATGTGCAGAACGACGAACCCGAAC
AAACTGTACGAAGATCAAAGAAGGCAGAGTGCATCAAAACATTAAGTTCCACCTTAAATATTCA
TGAGAACAGAAGAAACATTATAGTCAAACCTGTAAAGAGGGAACATAGTGTTCATGTACTGTTT
CTGGCCTTCCTCCTGCAAAATGTTTCGTGTTCGTATGATTGCGAATAGAGCCACTACTAGAGAA
AACAAACATCCACCCAAGAAAC
Conservation Information
Conserved circRNAs NA
PMCS 0.264980941
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020