Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os03g0223700_circ_g.3 |
ID in PlantcircBase | osa_circ_018598 |
Alias | NA |
Organism | Oryza sativa |
Position | chr3: 6469475-6473268 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os03g0223700 |
Parent gene annotation |
Armadillo-like helical domain containing protein. (Os03t0223700- 01) |
Parent gene strand | - |
Alternative splicing | Os03g0223700_circ_g.2 Os03g0223700_circ_g.4 Os03g0223700_circ_g.5 Os03g0223700_circ_g.6 Os03g0223700_circ_g.7 |
Support reads | 1 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os03t0223700-01:7 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.215010121 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
6473247-6469517(+) 6472175-6469488(+) 6472074-6469477(-) |
Potential amino acid sequence |
MSFKYAKNCDNTIAEADFWDCS*(+) MRHVSPVEHDCCEKCGLSRIQDDESDETLQLCAHELPTLIEQPHLKDQRVHLGVDRRCHSSMPR TVIIL*(+) MVQALNLILLTSTELAELRSLLKKTLVDSCGKDLFQSLYASWCHSPMATISLCLLAQAYNHAIS VIQSLGEEDINVKFLVQLDKLIRLLETPVFAYLRLQLLEPGKHTWLLKTLYGLLMLLPQQSAAF KILRTRLKTVPFSENLKRTSSTNPYSQILQVTEDGNRNHDTQSYNAINFPSRLHQFESMQQQHR VHLKNQLQSQKSASAIVLSQFLAYLNDIFDPLLNALSDPSDAVVLLVLEVHARIAEESHHFHHL VSYLIHTFHNNHVLLEKRGALIVRRLCILLGAEKVYREFSTILETEGDLEFASTMVQALNLILL TSTELAELRSLLKKTLVDSCGKDLFQSLYASWCHSPMATISLCLLAQAYNHAISVIQSLGEEDI NVKFLVQLDKLIRLLETPVFAYLRLQLLEPGKHTWLLKTLYGLLMLLPQQSAAFKILRTRLKTV PFSENLKRTSSTNPYSQILQVTEDGNRNHDTQSYNAINFPSRLHQFESMQQQHRVHLKNQLQSQ KSASAIVLSQFLAYLNDIFDPLLNALSDPSDAVVLLVLEVHARIAEESHHFHHLVSYLIHTFHN NHVLLEKRGALIVRRLCILLGAEKVYREFSTILETEGDLEFASTMVQALNLILLTSTELAELRS LLKKTLVDSCGKDLFQSLYASWCHSPMATISLCLLAQAYNHAISVIQSLGEEDINVKFLVQLDK LIRLLETPVFAYLRLQLLEPGKHTWLLKTLYGLLMLLPQQSAAFKILRTRLKTVPFSENLKRTS STNPYSQILQVTEDGNRNHDTQSYNAINFPSRLHQFESMQQQHRVHLKNQLQSQKSASAIVLSQ FLAYLNDIFDPLLNALSDPSDAVVLLVLEVHARIAEESHHFHHLVSYLIHTFHNNHVLLEKRGA LIVRRLCILLGAEKVYREFSTILETEGDLEFASTMVQALNLILLTSTELAELRSLLKKTLVDSC GKDLFQSLYASWCHSPMATISLCLLAQAYNHAISVIQSLGEEDINVKFLVQLDKLIRLLETPVF AYLRLQLLEPGKHTWLLKTLYGLLMLLPQQSAAFKILRTRLKTVPFSENLKRTSSTNPYSQILQ VTEDGNRNHDTQSYNAINFPSRLHQFESMQQQHRVHLKNQLQSQKSASAIVLSQ(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |