Detail information of Os03g0223700_circ_g.3


General Information
CircRNA Name Os03g0223700_circ_g.3
ID in PlantcircBase osa_circ_018598
Alias NA
Organism Oryza sativa
Position chr3: 6469475-6473268  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os03g0223700
Parent gene annotation Armadillo-like helical domain containing protein. (Os03t0223700-
01)
Parent gene strand -
Alternative splicing Os03g0223700_circ_g.2 Os03g0223700_circ_g.4 Os03g0223700_circ_g.5 Os03g0223700_circ_g.6 Os03g0223700_circ_g.7
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os03t0223700-01:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGTGCAGTTTCAAAGGCTTTGTAAGAGAGCTCACCGCATCTGAAGGATCAGAGAGTGCATTTAG
GAGTGGATCGAAGATGTCATTCAAGTATGCCAAGAActgtgataatactatagctgaagcagat
ttttgggattgcagttgattctttagatgaactctgtgctgctgctgcatgctctcaaactggt
ggagccgg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGTGATAATACTATAGCTGAAGCAGATTTTTGGGATTGCAGTTGATTCTTTAGATGAACTCTG
TGCTGCTGCTGCATGCTCTCAAACTGGTGGAGCCGGGATGGGAAATTGATTGCATTGTAGCTCT
GAGTGTCGTGATTTCGATTACCATCTTCTGTCACTTGTAGAATCTGAGAGTATGGATTTGTTGA
AGATGTGCGTTTCAAATTTTCACTGAAAGGCACAGTCTTCAGCCGAGTTCTCAAGATCTTGAAG
GCTGCACTTTGCTGCACAAACACATAAAGCTTAGTCATTCAATTCTAGAACTACTTAGAAAAAT
GACTATTGAAAACTTCCCGTAGTCTGTAAATAACATGAGGGACACATAAGGTTTACAAAAGCTC
AACCTTTCCTACAGAATCTGGTGAAAATGTCATGTTTGGCTTGAAGAATGAGACGATGAATTGA
TAATCAATACCTCAGAACTTGAAACCGCAAGTTTACTTATGTGGGGAAATGAGGAAATGGATTG
TCTCACCAAAATCATCAATGGACATGTGAACCAACGCATACTAGCGTAGTTGGGCTCCTCACTT
CGAACAGCATATGCAGGCCGAAAAGCATGATGCTAGAATAACGGAGGGGAAAAGGGAAAGGTAA
TGGTTATGTTAGCAACAGAGCGCCATGCATGCTGCAGAGAACAGAGGTGGTGCTGGTGATTGGC
GAACAAAAGGACGGCAGCGAAGAATGGACATAGCCAGGTGGGCCAAGCAAGCTCAGTCTCTCAC
CATGCTTTGTACAATGGTTTTTGCCCTCTGGAAGAGAAGAGGTGATCAGGTGGGGTAGCCCAGC
TCAGCCTATCACTATAAATAGCTGGCCACCTCTCTCTGTCCCCATGCCGTTTGTTTCTCACAGG
CTTCTCCCCACATCATCGGCCACCTCGACATCTCCCTATCAGCTTTATCCTGTTGGCCAACCAG
ACCGTGACCATGCCACATCAATAGGAGGTGGAGATGGCCTCAGCAAGCTTCCCAGAGAAGCTAT
TTGCAACTGCAGGGAGGAGCAGCAAAAGTAGCAACAACAGAATGAAATAGGTTGAGGAAGGAGA
AGCGGCAGAGAGTTATCGACAACAGCGAATGTCAAGCAGACGGCTTCAGCATCAGCTTTTATTG
ATCAGCAACTGCCATCCTAGTCAAAACTGAAAGGACTAAGTAGCTGCCAAGTCGCTTCTCACGG
AACTAGGCTAAAGCTTACAACTTAATAATAGGTCATCAGACACCTATGTTAACATCAGATTGCC
ACATCAACCAGATACTTTGCTTACTTTAAGTAAGCTAAAACAGTTCTAACTAGTCCATGTTAGG
CATAACTTAAGCATATTCCTGCATCCAACCTAACAATCTAACACACGAGAATTTCCTTCTCTAT
GTGTATCAAGTGTTCCGCTTCTCAGTTTGGAAACAGAATATGCATGAAACTATCAAAGCAAGAC
CGTAGGGTCACAAAAAATGAGATATCAAACATACCTGAGGCAGTAGCATCAGGAGACCATAAAG
TGTTTTGAGAAGCCAGGTATGTTTTCCAGGCTCAAGAAGCTGCAAATTTTATTAAACAAATCAT
TGGAGTACCATATCATAGAATAGTATCATCAGAACATTCAATTCTCCATACTGCTATACGCCTA
TACCACAAGTAAGATAACAAGAACAGTGCCCATGTCACCAAAGATTCATAAACTACTACTGACA
CAGTGTCAGTGTGACACATCACATAAACTGAATAACACATACATATGGGCTTTACAGCATTTGT
ACTGAATGTGGAAGCATTAGGAGATATCAAAAAGTTTAAATAAAATGCAAACCAAAAAACAACT
ACTCCCTCCGTCCCAAAATATAACAACTTTTAGCCCTCAGGATTTGTCCCAAAATATAACAACT
TCTCCAACACTCTTTCCAACCAATCACAACCCTCCACCATTCACTTTTCCCACCTACCTCCACT
ACTCATCCAATCACAACCCTCCACCACTCACTTCTACCTACTTTCTTAATAACCGTGTCCAACT
CTAAAACTTCTTATATTCTGGGACGGAGGAAGTAGTTTCATATCAACCGAATGAAACAAAGATG
AGGTATTATTGGAAAATGGAGCTCTACCTGCAAACGTAAGTAAGCAAATACAGGAGTCTCTAAA
AGACGGATTAATTTGTCTAGTTGCACGAGAAACTTCACATTTATATCTTCCTCTCCCAAAGACT
GGATAACAGAAATTGCATGATTGTATGCCTACACATGTTGGAAAAGAACATCCAAAGATCAGTG
CCCAAGTAAGAAACACAAACTGCAAAAGTTAGAAGTTGGTCATTACCTGCGCAAGTAGACACAA
GCTTATTGTAGCCATCGGAGAGTGACACCAAGAAGCGTATAAAGATTGAAATAAGTCCTTGCCA
CAAGAATCAACCAATGTTTTCTTAAGAAGAGAACGCAGCTCAGCAAGTTCGGTTGATGTGAGCA
AAATTAAATTCAAGGCCTACAAGAAATTTAACAGTTACGGAATGTCTACAGTTAAATTAGGCAG
TAGTATAGTGTTGCAACAGTGGGGGATACCTGAACCATGGTGGATGCAAATTCAAGGTCACCTT
CGGTCTCAAGAATAGTAGAGAACTCTCGATAAACTTTTTCAGCACCCAAAAGAATACAAAGTCG
ACGAACTATCAATGCGCCACGTCTGTATAAGTATGTCATAAACCATTGTTTGGTAAGCAATTTA
TGTAATAGTGAACTGTGTAACCCTAAAAGTAGGACTAATAACAAAGAAACATATACTATGTAAT
CAACTTTTGAGTGGGGAAATGTGCATACTTCTCCAGTAGAACATGATTGTTGTGAAAAGTGTGG
ATTAAGTAGGATACAAGATGATGAAAGTGATGAGACTCTTCAGCTATGCGCGCATGAACTTCCA
ACACTAATAGAACAACCTGCACATGAAAAAATGTGATGACAATAGCCAAGCTCTCTGATACGGT
ACAACAAATTTATTGAATTAGCAAAATATTAATGGTCAATAACCCTATAAAGCCATCAGCCCAT
CAGTCATTTATTGAACTATGATGCAAAGGGTTAGCATGATTTTTCCTTTTTGGTGGCAGTGGTG
GTTGGGGGGATGTGAAGGTTATTTATAGCTATCATATAATTGTGTCAAGCCCAGGTGACAATGG
AGAAGTAGACTTTATTAAGATTTATGAAACAAAGGATATTACAAATCCAATGGCAAGAACAGCA
GGTGTTTTTCTTTTTGGAAGGGAAACAACAGCAAATCTATCCTTGCCAACAGCAAGCGAAAATG
GATTCAATCATTGCCAACGCCAACACTGAAAAGCATCCCATTATGGTTTCTATACTGCAAGCGC
AATCATGTCTGTGTAATTGTATATGTTTTGGAAAGCCAAACACTCAGATGGCTGATATAGGGCC
ATGAGGGTTACTTATAAAAAAACATTTGAAGGGATGAAGTAACCCCTTGGTATATTATCCATGG
AAGAAAGAATAGGCCCACGATGCACTAAATTTGCACCAAGTCAAAAAATAAATTAGCACACACT
GTTCTCACTAAGTTAAACCTTCATTGATTTTATTTCAAGACTTGGTCACAGATCATTTGTATAA
CAAATAAAGCAATTAATCAGCTGCTCACAGAAAGTTGTAATGAAAAGGTGCAGTTTCAAAGGCT
TTGTAAGAGAGCTCACCGCATCTGAAGGATCAGAGAGTGCATTTAGGAGTGGATCGAAGATGTC
ATTCAAGTATGCCAAGAA
Conservation Information
Conserved circRNAs NA
PMCS 0.215010121
Functional Information
Coding potential Y
Potential coding position 6473247-6469517(+)
6472175-6469488(+)
6472074-6469477(-)
Potential amino acid sequence MSFKYAKNCDNTIAEADFWDCS*(+)
MRHVSPVEHDCCEKCGLSRIQDDESDETLQLCAHELPTLIEQPHLKDQRVHLGVDRRCHSSMPR
TVIIL*(+)
MVQALNLILLTSTELAELRSLLKKTLVDSCGKDLFQSLYASWCHSPMATISLCLLAQAYNHAIS
VIQSLGEEDINVKFLVQLDKLIRLLETPVFAYLRLQLLEPGKHTWLLKTLYGLLMLLPQQSAAF
KILRTRLKTVPFSENLKRTSSTNPYSQILQVTEDGNRNHDTQSYNAINFPSRLHQFESMQQQHR
VHLKNQLQSQKSASAIVLSQFLAYLNDIFDPLLNALSDPSDAVVLLVLEVHARIAEESHHFHHL
VSYLIHTFHNNHVLLEKRGALIVRRLCILLGAEKVYREFSTILETEGDLEFASTMVQALNLILL
TSTELAELRSLLKKTLVDSCGKDLFQSLYASWCHSPMATISLCLLAQAYNHAISVIQSLGEEDI
NVKFLVQLDKLIRLLETPVFAYLRLQLLEPGKHTWLLKTLYGLLMLLPQQSAAFKILRTRLKTV
PFSENLKRTSSTNPYSQILQVTEDGNRNHDTQSYNAINFPSRLHQFESMQQQHRVHLKNQLQSQ
KSASAIVLSQFLAYLNDIFDPLLNALSDPSDAVVLLVLEVHARIAEESHHFHHLVSYLIHTFHN
NHVLLEKRGALIVRRLCILLGAEKVYREFSTILETEGDLEFASTMVQALNLILLTSTELAELRS
LLKKTLVDSCGKDLFQSLYASWCHSPMATISLCLLAQAYNHAISVIQSLGEEDINVKFLVQLDK
LIRLLETPVFAYLRLQLLEPGKHTWLLKTLYGLLMLLPQQSAAFKILRTRLKTVPFSENLKRTS
STNPYSQILQVTEDGNRNHDTQSYNAINFPSRLHQFESMQQQHRVHLKNQLQSQKSASAIVLSQ
FLAYLNDIFDPLLNALSDPSDAVVLLVLEVHARIAEESHHFHHLVSYLIHTFHNNHVLLEKRGA
LIVRRLCILLGAEKVYREFSTILETEGDLEFASTMVQALNLILLTSTELAELRSLLKKTLVDSC
GKDLFQSLYASWCHSPMATISLCLLAQAYNHAISVIQSLGEEDINVKFLVQLDKLIRLLETPVF
AYLRLQLLEPGKHTWLLKTLYGLLMLLPQQSAAFKILRTRLKTVPFSENLKRTSSTNPYSQILQ
VTEDGNRNHDTQSYNAINFPSRLHQFESMQQQHRVHLKNQLQSQKSASAIVLSQ(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017