Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Os03g0223700_circ_g.3 |
| ID in PlantcircBase | osa_circ_018598 |
| Alias | NA |
| Organism | Oryza sativa |
| Position | chr3: 6469475-6473268 JBrowse» |
| Reference genome | IRGSP-1.0.38 |
| Type | e-circRNA |
| Identification method | CIRCexplorer |
| Parent gene | Os03g0223700 |
| Parent gene annotation |
Armadillo-like helical domain containing protein. (Os03t0223700- 01) |
| Parent gene strand | - |
| Alternative splicing | Os03g0223700_circ_g.2 Os03g0223700_circ_g.4 Os03g0223700_circ_g.5 Os03g0223700_circ_g.6 Os03g0223700_circ_g.7 |
| Support reads | 1 |
| Tissues | root |
| Exon boundary | Yes-Yes |
| Splicing signals | CT-AC |
| Number of exons covered | Os03t0223700-01:7 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.215010121 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
6473247-6469517(+) 6472175-6469488(+) 6472074-6469477(-) |
| Potential amino acid sequence |
MSFKYAKNCDNTIAEADFWDCS*(+) MRHVSPVEHDCCEKCGLSRIQDDESDETLQLCAHELPTLIEQPHLKDQRVHLGVDRRCHSSMPR TVIIL*(+) MVQALNLILLTSTELAELRSLLKKTLVDSCGKDLFQSLYASWCHSPMATISLCLLAQAYNHAIS VIQSLGEEDINVKFLVQLDKLIRLLETPVFAYLRLQLLEPGKHTWLLKTLYGLLMLLPQQSAAF KILRTRLKTVPFSENLKRTSSTNPYSQILQVTEDGNRNHDTQSYNAINFPSRLHQFESMQQQHR VHLKNQLQSQKSASAIVLSQFLAYLNDIFDPLLNALSDPSDAVVLLVLEVHARIAEESHHFHHL VSYLIHTFHNNHVLLEKRGALIVRRLCILLGAEKVYREFSTILETEGDLEFASTMVQALNLILL TSTELAELRSLLKKTLVDSCGKDLFQSLYASWCHSPMATISLCLLAQAYNHAISVIQSLGEEDI NVKFLVQLDKLIRLLETPVFAYLRLQLLEPGKHTWLLKTLYGLLMLLPQQSAAFKILRTRLKTV PFSENLKRTSSTNPYSQILQVTEDGNRNHDTQSYNAINFPSRLHQFESMQQQHRVHLKNQLQSQ KSASAIVLSQFLAYLNDIFDPLLNALSDPSDAVVLLVLEVHARIAEESHHFHHLVSYLIHTFHN NHVLLEKRGALIVRRLCILLGAEKVYREFSTILETEGDLEFASTMVQALNLILLTSTELAELRS LLKKTLVDSCGKDLFQSLYASWCHSPMATISLCLLAQAYNHAISVIQSLGEEDINVKFLVQLDK LIRLLETPVFAYLRLQLLEPGKHTWLLKTLYGLLMLLPQQSAAFKILRTRLKTVPFSENLKRTS STNPYSQILQVTEDGNRNHDTQSYNAINFPSRLHQFESMQQQHRVHLKNQLQSQKSASAIVLSQ FLAYLNDIFDPLLNALSDPSDAVVLLVLEVHARIAEESHHFHHLVSYLIHTFHNNHVLLEKRGA LIVRRLCILLGAEKVYREFSTILETEGDLEFASTMVQALNLILLTSTELAELRSLLKKTLVDSC GKDLFQSLYASWCHSPMATISLCLLAQAYNHAISVIQSLGEEDINVKFLVQLDKLIRLLETPVF AYLRLQLLEPGKHTWLLKTLYGLLMLLPQQSAAFKILRTRLKTVPFSENLKRTSSTNPYSQILQ VTEDGNRNHDTQSYNAINFPSRLHQFESMQQQHRVHLKNQLQSQKSASAIVLSQ(-) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Chu et al., 2017 |